rna7114, rna7114 (mRNA) Nannochloropsis gaditana

Overview
Namerna7114
Unique Namerna7114
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length687
Alignment locationCM002470.1:481713..483374 +

Link to JBrowse

Properties
Property NameValue
Productdeoxyribodipyrimidine photo-lyase
Orig transcript idgnl|cribi|Naga_100610g5.2614.mrna
Orig protein idgnl|cribi|Naga_100610g5.2614
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:481713..483374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100610g5gene6879Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7114rna7114-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23577.1cds7097Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7114 ID=rna7114|Name=rna7114|organism=Nannochloropsis gaditana|type=mRNA|length=687bp
ATGCTCTACTTCCTGCCCTCAACCTACGCACAGCGGAGTTTTATCTGGCC
ACAATATCAGCCAAATGGCAGGGATGCTGAGGAGGGTTGGGTCGAAGGAG
GAGGCGAACACGAGACTAAAGAGGAAGAGGAGGAAGACCGAGGGTCTACC
TTGGCGTCCCCCCCCTCATCTCCTTCGCGATCCTTTCTGTCATCCATCAG
CAATGGGAGTTACAACGGCGAAGATGTTGCGTTTTTCATCCCCGCCTCCG
ATGAGAGCTTGCCGGCAACTTCTTCCCTGGTTTCATTTGATATTTCGCCT
CAAGCGCGGGGGGAAAGCGACAGGTGGGACACCCGAGCTGAGGAGGCAGA
GGAGGGGACGGAAGGAGGGGGGAAAAAGAATGTCGAGGAGAACAAATCCG
CAAGGGAAATGGAAATACACACTGTGCTTGACATTTTAGACTCTAACGAG
CTTGAACAATTAGACTGGTGGCATGTGCTGGGGATGAGCCCACCCCAAGG
ACTGCAAAATGAGAGGAAACAAGAAGGCACGCGGAATCGTCTTGAAAATA
CTCGTGAAACCTGTCCTAGAACTCCAAACCGAAGGCAGGGCTTCAGATTG
AGTCCTATGCCCACTCCTCGTGCCAAGATTGATCACATGTGGGAGATTTT
GTGCCCGTTTCCCCGGGGCCCGGCCTCTCCGATATAA
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protein sequence of rna7114

>rna7114-protein ID=rna7114-protein|Name=rna7114|organism=Nannochloropsis gaditana|type=polypeptide|length=553bp
MKVSRSFLHALMASVVLSLLLLPSDTYGFRSRPLPLPSSSLLRLFTSYIQ
PSPSLSCGGSVQLPRGTSPRLVSLIRRFSAGSTSSSQDSIDRSLVWFTRG
DLRLHDNEALFKSTSPSSSSSASSSHIIPLLILDPAFLATLSPHTLHLYL
LAVNDLRDSFQRHPHASSPLIVRTGPVEELLPALVHASQATSLWVYEDVT
ENQRSLVRRGLSSLPSPSSSSSMPITVHKWTTRLRSSVKGGTVGDNWAKD
YLPVVQKLPLDPPFPSFPPSSPPSSSTSSWVPEDVGRIPSFEELLQLTFG
GEESPSSPAPSPTASLLRQARALAAREEYWTPSYYPEDQGEGEEGKEGRV
GGETLALRWVKEYMELGPLGFGEKHLPASGTGLERQVMRRLVLAKGIGRG
RGGGQGGSSHMVTRAVGSGWAVAKPWHLHPPLPPFLPPSLPPFLPPSLPP
ALPPSLPPLSFFPDRLRRPLRRRSLHPRFLSPSRPRCSLPPVSGYPAPAV
PTPFPPSRPPPFPPARPEERGGLGLRSAGASRVAPSVGRAGRGSRFVAGN
GTV
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mRNA from alignment at CM002470.1:481713..483374+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7114 ID=rna7114|Name=rna7114|organism=Nannochloropsis gaditana|type=mRNA|length=1662bp|location=Sequence derived from alignment at CM002470.1:481713..483374+ (Nannochloropsis gaditana)
ATGAAGGTCTCCAGGAGTTTCCTTCATGCATTGATGGCCTCCGTagtcct
ttcccttcttctccttccatcgGACACGTACGGCTTTCGCAGccgcccct
tgcccctcccttcgtcctcccttctacGACTTTTCACGTCATATATCcag
ccttctccctcgctttcctgtGGCGGATCTGTCCAACTGCCTCGTGGGac
ttctccccgccttgtctccctcatACGCCGCTTCTCCGCCGGTTCGACCT
CATCCTCCCAGGATTCCATCGACCGGTCTCTGGTCTGGTTCACCCGCGGC
GATTTGCGCTTACACGACAACGAAGCCTTGTTCAAGTCAacatccccttc
ttcttcctcctccgcctcctcctcccacatcatccccctcctcatcctcg
acccggccttcctcgccaccctctccccccacacccttcacctctacctc
ctcgccGTCAACGACCTTCGCGACTCCTTCCAAAGACatccccacgcctc
ctcccccctcatcGTCCGCACGGGGCCCGTCGAGGAgctgcttcccgccc
tcgtgcaCGCCTCTCAGGCCACATCCCTGTGGGTCTACGAGGACGTCACC
GAGAACCAACGATCCCTCGTACGGCGCgggctttcctctcttccctcccc
ctcatcttcttcctccatgcccatcACCGTTCACAAATGGACCACTCGCC
TCCGCTCCAGtgtgaagggaggaacggtCGGAGACAATTGGGCGAAGGAC
TACCTCCCCGTGGTTCAGAAGCTGCCCCTCGatccgccctttccctcctt
ccctccctccagccctccctcttcttccacctcctcctgggttCCTGAGG
ACGTGGGTCGTATCCCTTCCTTCGaggagctgctgcagctcacctttggg
ggggaagaaagcccttcctcccccgctccctcccccacggcctccctctt
gagGCAGGCACGAGCCCTGGCAGCCCGGGAAGAATACTGGACGCCCAGCT
ACTACCCGGAGgaccagggggaaggggaggaagggaaggaggggagggtg
gggggggagacgctGGCGTTGCGGTGGGTGAAGGAGTACATGGAGCTGGG
CCCTCTGGGCTTCGGCGAGAAGCATTTGCCCGCGTCCGGGACGGGCCTGG
AAAGGCAGGTGATGCGGCGCCTGGTGCTCGCTAAAGGTatagggagagga
aggggagggggacagggagggtcCTCTCACATGGTCACGCGTGCCGTGGG
CTCCGGGTGGGCTGTGGCCAAGCCGTGGCACcttcacccccccctccctc
ccttcctccctccctccctccctcccttcctccccccctctctccctccc
gccctcccgccctccctcccgcccttaTCCTTTTTCCCTGACAGGCTACG
CAGGCCTCTTCGACGGCGAAGTCTTCACCcgcgctttctctccccttctc
gaCCTCGGTGTTCTCTCCCCCCGGTATCTGGCTACCCTGCTCCCGccgtc
cccacccccttccctccctcccgccctccgccctttcctcctgcaaggcc
ggaagaaagaggcggccTTGGTCTCAGAAGTGCTGGAGCGTCGAGAGTGG
CACCAAGTGTTGGCAGAGCGGGACGTGGATCACGCTTCGTGGCCGGAAAC
GGAACCGTTTGA
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Coding sequence (CDS) from alignment at CM002470.1:481713..483374+

>rna7114 ID=rna7114|Name=rna7114|organism=Nannochloropsis gaditana|type=CDS|length=1662bp|location=Sequence derived from alignment at CM002470.1:481713..483374+ (Nannochloropsis gaditana)
ATGAAGGTCTCCAGGAGTTTCCTTCATGCATTGATGGCCTCCGTagtcct
ttcccttcttctccttccatcgGACACGTACGGCTTTCGCAGccgcccct
tgcccctcccttcgtcctcccttctacGACTTTTCACGTCATATATCcag
ccttctccctcgctttcctgtGGCGGATCTGTCCAACTGCCTCGTGGGac
ttctccccgccttgtctccctcatACGCCGCTTCTCCGCCGGTTCGACCT
CATCCTCCCAGGATTCCATCGACCGGTCTCTGGTCTGGTTCACCCGCGGC
GATTTGCGCTTACACGACAACGAAGCCTTGTTCAAGTCAacatccccttc
ttcttcctcctccgcctcctcctcccacatcatccccctcctcatcctcg
acccggccttcctcgccaccctctccccccacacccttcacctctacctc
ctcgccGTCAACGACCTTCGCGACTCCTTCCAAAGACatccccacgcctc
ctcccccctcatcGTCCGCACGGGGCCCGTCGAGGAgctgcttcccgccc
tcgtgcaCGCCTCTCAGGCCACATCCCTGTGGGTCTACGAGGACGTCACC
GAGAACCAACGATCCCTCGTACGGCGCgggctttcctctcttccctcccc
ctcatcttcttcctccatgcccatcACCGTTCACAAATGGACCACTCGCC
TCCGCTCCAGtgtgaagggaggaacggtCGGAGACAATTGGGCGAAGGAC
TACCTCCCCGTGGTTCAGAAGCTGCCCCTCGatccgccctttccctcctt
ccctccctccagccctccctcttcttccacctcctcctgggttCCTGAGG
ACGTGGGTCGTATCCCTTCCTTCGaggagctgctgcagctcacctttggg
ggggaagaaagcccttcctcccccgctccctcccccacggcctccctctt
gagGCAGGCACGAGCCCTGGCAGCCCGGGAAGAATACTGGACGCCCAGCT
ACTACCCGGAGgaccagggggaaggggaggaagggaaggaggggagggtg
gggggggagacgctGGCGTTGCGGTGGGTGAAGGAGTACATGGAGCTGGG
CCCTCTGGGCTTCGGCGAGAAGCATTTGCCCGCGTCCGGGACGGGCCTGG
AAAGGCAGGTGATGCGGCGCCTGGTGCTCGCTAAAGGTatagggagagga
aggggagggggacagggagggtcCTCTCACATGGTCACGCGTGCCGTGGG
CTCCGGGTGGGCTGTGGCCAAGCCGTGGCACcttcacccccccctccctc
ccttcctccctccctccctccctcccttcctccccccctctctccctccc
gccctcccgccctccctcccgcccttaTCCTTTTTCCCTGACAGGCTACG
CAGGCCTCTTCGACGGCGAAGTCTTCACCcgcgctttctctccccttctc
gaCCTCGGTGTTCTCTCCCCCCGGTATCTGGCTACCCTGCTCCCGccgtc
cccacccccttccctccctcccgccctccgccctttcctcctgcaaggcc
ggaagaaagaggcggccTTGGTCTCAGAAGTGCTGGAGCGTCGAGAGTGG
CACCAAGTGTTGGCAGAGCGGGACGTGGATCACGCTTCGTGGCCGGAAAC
GGAACCGTTTGA
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Synonyms
Publications