EWM23577.1, cds7097 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23577.1 vs. NCBI_GenBank
Match: gi|585104713|gb|EWM23577.1| (deoxyribodipyrimidine photo-lyase [Nannochloropsis gaditana]) HSP 1 Score: 1066.22 bits (2756), Expect = 0.000e+0 Identity = 553/553 (100.00%), Postives = 553/553 (100.00%), Query Frame = 0
Query: 1 MKVSRSFLHALMASVVLSLLLLPSDTYGFRSRPLPLPSSSLLRLFTSYIQPSPSLSCGGSVQLPRGTSPRLVSLIRRFSAGSTSSSQDSIDRSLVWFTRGDLRLHDNEALFKSTSPSSSSSASSSHIIPLLILDPAFLATLSPHTLHLYLLAVNDLRDSFQRHPHASSPLIVRTGPVEELLPALVHASQATSLWVYEDVTENQRSLVRRGLSSLPSPSSSSSMPITVHKWTTRLRSSVKGGTVGDNWAKDYLPVVQKLPLDPPFPSFPPSSPPSSSTSSWVPEDVGRIPSFEELLQLTFGGEESPSSPAPSPTASLLRQARALAAREEYWTPSYYPEDQGEGEEGKEGRVGGETLALRWVKEYMELGPLGFGEKHLPASGTGLERQVMRRLVLAKGIGRGRGGGQGGSSHMVTRAVGSGWAVAKPWHLHPPLPPFLPPSLPPFLPPSLPPALPPSLPPLSFFPDRLRRPLRRRSLHPRFLSPSRPRCSLPPVSGYPAPAVPTPFPPSRPPPFPPARPEERGGLGLRSAGASRVAPSVGRAGRGSRFVAGNGTV 553
MKVSRSFLHALMASVVLSLLLLPSDTYGFRSRPLPLPSSSLLRLFTSYIQPSPSLSCGGSVQLPRGTSPRLVSLIRRFSAGSTSSSQDSIDRSLVWFTRGDLRLHDNEALFKSTSPSSSSSASSSHIIPLLILDPAFLATLSPHTLHLYLLAVNDLRDSFQRHPHASSPLIVRTGPVEELLPALVHASQATSLWVYEDVTENQRSLVRRGLSSLPSPSSSSSMPITVHKWTTRLRSSVKGGTVGDNWAKDYLPVVQKLPLDPPFPSFPPSSPPSSSTSSWVPEDVGRIPSFEELLQLTFGGEESPSSPAPSPTASLLRQARALAAREEYWTPSYYPEDQGEGEEGKEGRVGGETLALRWVKEYMELGPLGFGEKHLPASGTGLERQVMRRLVLAKGIGRGRGGGQGGSSHMVTRAVGSGWAVAKPWHLHPPLPPFLPPSLPPFLPPSLPPALPPSLPPLSFFPDRLRRPLRRRSLHPRFLSPSRPRCSLPPVSGYPAPAVPTPFPPSRPPPFPPARPEERGGLGLRSAGASRVAPSVGRAGRGSRFVAGNGTV
Sbjct: 1 MKVSRSFLHALMASVVLSLLLLPSDTYGFRSRPLPLPSSSLLRLFTSYIQPSPSLSCGGSVQLPRGTSPRLVSLIRRFSAGSTSSSQDSIDRSLVWFTRGDLRLHDNEALFKSTSPSSSSSASSSHIIPLLILDPAFLATLSPHTLHLYLLAVNDLRDSFQRHPHASSPLIVRTGPVEELLPALVHASQATSLWVYEDVTENQRSLVRRGLSSLPSPSSSSSMPITVHKWTTRLRSSVKGGTVGDNWAKDYLPVVQKLPLDPPFPSFPPSSPPSSSTSSWVPEDVGRIPSFEELLQLTFGGEESPSSPAPSPTASLLRQARALAAREEYWTPSYYPEDQGEGEEGKEGRVGGETLALRWVKEYMELGPLGFGEKHLPASGTGLERQVMRRLVLAKGIGRGRGGGQGGSSHMVTRAVGSGWAVAKPWHLHPPLPPFLPPSLPPFLPPSLPPALPPSLPPLSFFPDRLRRPLRRRSLHPRFLSPSRPRCSLPPVSGYPAPAVPTPFPPSRPPPFPPARPEERGGLGLRSAGASRVAPSVGRAGRGSRFVAGNGTV 553
BLAST of EWM23577.1 vs. NCBI_GenBank
Match: gi|1137219244|gb|OMO85847.1| (hypothetical protein CCACVL1_09967 [Corchorus capsularis]) HSP 1 Score: 68.1662 bits (165), Expect = 2.535e-8 Identity = 63/213 (29.58%), Postives = 100/213 (46.95%), Query Frame = 0
Query: 93 SLVWFTRGDLRLHDNEALFKSTSPSSSSSASSSH--IIPLLILDPAFLATLSPHTLHLYLLAVNDLRDSFQRHPHASSPLIVRTGPVEELLPALVHASQATSLWVYEDVTENQRSLVRRGLSSLPSPSSSSSMPITVHKWTTRLRSSVKG-----GTVGDNWAKDYLPVVQKLPLDPPFPSFPPSSPPSSSTS-SWVPEDVGRIPSFEELLQL 297
+++WF + DLRL D+ AL ++A+ +H ++PL + D LA S L L L A++DLR+S + H S L++R G E ++ LV +AT ++V E++ R ++ +L SS P V W T VK T D +KL L PP PP++ P+ T +W P +P+F +L +
Sbjct: 46 AILWF-KHDLRLDDHPAL---------AAAAETHRSVLPLYVFDHRILARYSDEILELVLFALDDLRNSLKEH---GSNLMIRFGSAENVITELVKEVKATDVFVEEEIEYEMRQMIGVVKDTLEMSSSVDGNPDIV-MWRTPF-YDVKNLKDLPATYND---------FKKLKL-PPTSPLPPATLPAVETELNWGP-----LPTFSDLKEF 228 The following BLAST results are available for this feature:
BLAST of EWM23577.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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