rna711, rna711 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna711
Unique Name	rna711
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1071
Alignment location	CM002456.1:240619..242186 +

Link to JBrowse

Properties


Property Name	Value
Product	udp-glucose 4-epimerase
Orig transcript id	gnl\|cribi\|Naga_101089g1.5931.mrna
Orig protein id	gnl\|cribi\|Naga_101089g1.5931
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:240619..242186 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101089g1	gene682	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna711	rna711-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29962.1	cds711	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:240619..242186+
coding sequence from alignment at CM002456.1:240619..242186+

mRNA sequence

>rna711 ID=rna711|Name=rna711|organism=Nannochloropsis gaditana|type=mRNA|length=1071bp
ATGGGGAGGGAAGGACGAAAGCCTAAAAAAGAAAGAGGGGGACAAGGTCT
CTCACGCCCCTTTGCCCTTCCTCCCTCCCCTCCTTCCCTTTTCCCCTCCC
TCCAGGCACTTCCCATGGACCGATGGCGCCTGTCGACGGCCTACCTCTAC
CTCCACCTCTTCCTTCACTTCAATCTCCACGCACGGGCCCTTCGGCGCAA
AGACCGCCTTCCCTCCTCCCTCCACCCTTCCCTCCCCCTCCCCCCCGCCT
TCTGTGCGTGGGAACGGGTCAGCTTCTACGTGGAAGGGATGGACACCTTC
TGGAAGCTGGCCCTCCAGGCTCATCACGGGGCCGTAGCCTCCGCTGCCGC
TTCCCTCCTCATCGAACTTCATGCCGGCATCGCCCCTTCCACCCCCATCA
CCCCCGCCTCCTCCTCAACCTCCCCCCTACCTCCCTCGGAGACGGACGGG
GTTTGTCGCGGGGCTCTCGCCCAACGATGTCTGGATGCCCTGGCCGATTC
CTGGATTTTGCAGGAAGGGGGGGAAGGTGGGAGGGAGGATGGGGGGGAGG
ATGGGGGGGAGGAAGGGGGGGAGGAAGGCCGCAGAAGGGAGGCCTCTCGC
GTCATGAGAATAGTGCAGATCTTCAAGGGGCTGGTGCGTCGGTGCGCAGA
GAGAGACGCACTACTTCCTTTCACCTCCTTTCCTCCTTCCTCCGACTCAG
CACGCAGGACAGGGGAGGGGAAGGAGGAGGGAGGGGAAGGGGGAGGAGGG
GAGGAGGAGGATGAAAGAATTGACCTGGTGGTGCAAGTAGGGGAAAAGGG
CGAGAAACACGTGGAGATGAGCGGACTTAAGGTGGAGACACGGGTGGGCA
CCGTTCGAGATCACGTGGCGTCGGAAATACAAATCCCCGTGGAGGGGATT
CAACTGTATGTGATGAGTCGGGAAGGGAAAGAAGGGCCGGGGCCGAGGGA
GGAGGTGGAAACACCGGTGATGGGGAGGGAAGGAGGGAGATGCCCTATCC
CCTTGGTTTGACGGAATTCGACCTTCTCGAATGCGACGGGGCGACGCTTG
AGGATGAGGGTTTGCACCTCC

protein sequence of rna711

>rna711-protein ID=rna711-protein|Name=rna711|organism=Nannochloropsis gaditana|type=polypeptide|length=190bp
MTTPFMKGLGQYAAPIFMGASLLYALGQKHREDLRKARRDRAHNRILVTG
GAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFC
KADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGT
LHLLNAMHRHGCKIMGAAGRGRGREGRRRESRKCIRCPLC

mRNA from alignment at CM002456.1:240619..242186+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna711 ID=rna711|Name=rna711|organism=Nannochloropsis gaditana|type=mRNA|length=1568bp|location=Sequence derived from alignment at CM002456.1:240619..242186+ (Nannochloropsis gaditana)
ggaaggaaaggaaccCAGCTATTCAGGACGTTATCACCGCAAAAGTTTAC
GAGGGTGACTAGCGCTTCACTGTACGCACGCTTCGTTTTTGGGGGGCTAT
GCATCGCATAATTGGCATGCTCAGAGTCATTCGCCCAACGCCCCGCCCCT
GGCTTCTCGTAGTGATAAACTTCCGAGTCTCTGCCATTTGAATACATTCC
TCAAAACTTCCTCAACCTCACGGCCTTTATAGTGACAACGAATGTACCGT
GATCGTACGCAGTCGTTAAAACCGCGAGGTGCAGGAGTTGCGACAATTCT
AGTTTTTGAGCCGCAGCACGTGCTTAACGCCCTGGGGAGAACTCACGAGG
AGTACGAGGGAGAAATCCGACATGTTCCTTATACCCTTCACACGGAGAAC
TGACGCGCCCGCTATCAAAATTTTCCCGACACTTTCACGTACATGACGCA
CAGGTCCTTTCCAGTTCCAcattgcttttcctcccattGTGTAAAAGGGG
ACTGTCGGGGGGCAAGCACTTCACATCGGAACTCGGAGGCCGACCAGGAA
GTCAGTCCGAcccaggaaaaaagggcgaAGCGTCCATGACTACGCCATTT
ATGAAGGGGTTGGGACAATATGCGGCCCCTATTTTCATGGGGGCCTCGTT
GCTGTACGCGTTGGGGCAAAAGCATCGAGAGGACCTGCGTAAAGCCCGGC
GCGACCGAGCTCATAACCGGTACGGGAAACGCAAGTGGAAACAGACAGGA
TCGAAAAAGGAAATAAAAATTGGCTGAAAAGGGTTTGGCCGTGGGAAATG
GGGACGGCCGCACTGATCCGGGAAGCCTTTTGTTTGCAGTCTACGCGGGC
CAGGACGCCCTGcatgtccttccttctcaccccctcctcccttcccttct
tcggtaccccctccccctttcccgggATTTCTCTCCGACCAGCATCCTTG
TGACCGGGGGCGCGGGGTACATAGGCAGCCACACGGTGCTCCTCCTGGTC
GAGGCTGGCTatgaggtggtggtggtggataGTCTGGTGAATTCCTGTGA
GGAGGCTCTCCGGCGCGTTGGGGCCTTGACCGGCCACCCGGAGAAGGTTA
TTTTTTGCAAGGTAGGGCTgtgtagagggagggaaggagggcgggttgag
gaagggggggaggaaggggagggcgtgggcagGGGGGCGAGAACGCCGGG
AAGCAAGCAAGCCGCCATAACCCTCTCACCTTCCATGgcaccatcctccc
tccctctttccctccttccctccctcccctccctgcaggccgacctcctg
gacgaggaggcgcttGAATCCGTTTTCGCCACCCACGGGGGCTTTCGGGC
CTGCGTGCATTTCGCCGGCttgaaggcggtgggagagagcGTGGCCAAAC
CCCTGCTTTACTACGCGAACAATTTGACAGGgaccctccacctcctgaaT
GCCATGCACCGGCACGGGTGTAAGATCATGGgtgcggcagggagggggag
agggagggagggaaggagaagggaaagcaggaAATGCATTCGTTGTCCTC
TGTGCTGACCGCATGAGA

Coding sequence (CDS) from alignment at CM002456.1:240619..242186+

>rna711 ID=rna711|Name=rna711|organism=Nannochloropsis gaditana|type=CDS|length=1719bp|location=Sequence derived from alignment at CM002456.1:240619..242186+ (Nannochloropsis gaditana)
ATGACTACGCCATTTATGAAGGGGTTGGGACAATATGCGGCCCCTATTTT
CATGGGGGCCTCGTTGCTGTACGCGTTGGGGCAAAAGCATCGAGAGGACC
TGCGTAAAGCCCGGCGCGACCGAGCTCATAACCGCATCCTTGTGACCGGG
GGCGCGGGGTACATAGGCAGCCACACGGTGCTCCTCCTGGTCGAGGCTGG
CTatgaggtggtggtggtggataGTCTGGTGAATTCCTGTGAGGAGGCTC
TCCGGCGCGTTGGGGCCTTGACCGGCCACCCGGAGAAGGTTATTTTTTGC
AAGgccgacctcctggacgaggaggcgcttGAATCCGTTTTCGCCACCCA
CGGGGGCTTTCGGGCCTGCGTGCATTTCGCCGGCttgaaggcggtgggag
agagcGTGGCCAAACCCCTGCTTTACTACGCGAACAATTTGACAGGgacc
ctccacctcctgaaTGCCATGCACCGGCACGGGTGTAAGATCATGGgtgc
ggcagggagggggagagggagggagggaaggagaagggaaagcaggaAAT
GCATTCGTTGTCCTCTGTGCTGAATGACTACGCCATTTATGAAGGGGTTG
GGACAATATGCGGCCCCTATTTTCATGGGGGCCTCGTTGCTGTACGCGTT
GGGGCAAAAGCATCGAGAGGACCTGCGTAAAGCCCGGCGCGACCGAGCTC
ATAACCGCATCCTTGTGACCGGGGGCGCGGGGTACATAGGCAGCCACACG
GTGCTCCTCCTGGTCGAGGCTGGCTatgaggtggtggtggtggataGTCT
GGTGAATTCCTGTGAGGAGGCTCTCCGGCGCGTTGGGGCCTTGACCGGCC
ACCCGGAGAAGGTTATTTTTTGCAAGgccgacctcctggacgaggaggcg
cttGAATCCGTTTTCGCCACCCACGGGGGCTTTCGGGCCTGCGTGCATTT
CGCCGGCttgaaggcggtgggagagagcGTGGCCAAACCCCTGCTTTACT
ACGCGAACAATTTGACAGGgaccctccacctcctgaaTGCCATGCACCGG
CACGGGTGTAAGATCATGGgtgcggcagggagggggagagggagggaggg
aaggagaagggaaagcaggaAATGCATTCGTTGTCCTCTGTGCTGAATGA
CTACGCCATTTATGAAGGGGTTGGGACAATATGCGGCCCCTATTTTCATG
GGGGCCTCGTTGCTGTACGCGTTGGGGCAAAAGCATCGAGAGGACCTGCG
TAAAGCCCGGCGCGACCGAGCTCATAACCGCATCCTTGTGACCGGGGGCG
CGGGGTACATAGGCAGCCACACGGTGCTCCTCCTGGTCGAGGCTGGCTat
gaggtggtggtggtggataGTCTGGTGAATTCCTGTGAGGAGGCTCTCCG
GCGCGTTGGGGCCTTGACCGGCCACCCGGAGAAGGTTATTTTTTGCAAGg
ccgacctcctggacgaggaggcgcttGAATCCGTTTTCGCCACCCACGGG
GGCTTTCGGGCCTGCGTGCATTTCGCCGGCttgaaggcggtgggagagag
cGTGGCCAAACCCCTGCTTTACTACGCGAACAATTTGACAGGgaccctcc
acctcctgaaTGCCATGCACCGGCACGGGTGTAAGATCATGGgtgcggca
gggagggggagagggagggagggaaggagaagggaaagcaggaAATGCAT
TCGTTGTCCTCTGTGCTGA

Synonyms

Publications