EWM29962.1, cds711 (CDS) Nannochloropsis gaditana

Overview
NameEWM29962.1
Unique Namecds711
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:241204..241337 +
Alignment locationCM002456.1:241561..241729 +
Alignment locationCM002456.1:241907..242176 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29962.1
Productudp-glucose 4-epimerase
Orig transcript idgnl|cribi|Naga_101089g1.5931.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:241204..241337 +
CM002456.1supercontigCM002456.1:241561..241729 +
CM002456.1supercontigCM002456.1:241907..242176 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003978UDP-glucose 4-epimerase activity
GO:0050662coenzyme binding
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO:0006012galactose metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR005886GalE
IPR001509Epimerase_deHydtase_N
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM29962.1 vs. NCBI_GenBank
Match: gi|585112558|gb|EWM29962.1| (udp-glucose 4-epimerase [Nannochloropsis gaditana])

HSP 1 Score: 385.185 bits (988), Expect = 2.687e-135
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 MTTPFMKGLGQYAAPIFMGASLLYALGQKHREDLRKARRDRAHNRILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCKIMGAAGRGRGREGRRRESRKCIRCPLC 190
            MTTPFMKGLGQYAAPIFMGASLLYALGQKHREDLRKARRDRAHNRILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCKIMGAAGRGRGREGRRRESRKCIRCPLC
Sbjct:    1 MTTPFMKGLGQYAAPIFMGASLLYALGQKHREDLRKARRDRAHNRILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCKIMGAAGRGRGREGRRRESRKCIRCPLC 190          
BLAST of EWM29962.1 vs. NCBI_GenBank
Match: gi|769940464|ref|WP_045073823.1| (UDP-glucose 4-epimerase GalE [Arthrobacter sp. IHBB 11108] >gi|767257003|gb|AJT40886.1| UDP-glucose 4-epimerase [Arthrobacter sp. IHBB 11108])

HSP 1 Score: 152.14 bits (383), Expect = 1.234e-41
Identity = 80/119 (67.23%), Postives = 91/119 (76.47%), Query Frame = 0
Query:   45 RILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCK 163
            +ILVTGGAGYIGSHTVL L+E G+++VVVD+L NS EE+LRRV  L+G P  V F + DLLDE ALE VF       A VHFAGLKAVGESVA+PLLYY NNL GTLHLL +M  HG K
Sbjct:    2 KILVTGGAGYIGSHTVLGLLEKGHQLVVVDNLDNSSEESLRRVQELSGQP--VSFHQVDLLDEAALEQVFVQESP-EAVVHFAGLKAVGESVAEPLLYYRNNLIGTLHLLQSMKNHGVK 117          
BLAST of EWM29962.1 vs. NCBI_GenBank
Match: gi|1124294125|ref|WP_074588306.1| (UDP-glucose 4-epimerase GalE [Arthrobacter cupressi] >gi|1086572296|emb|SDI90630.1| UDP-glucose 4-epimerase [Arthrobacter cupressi])

HSP 1 Score: 151.754 bits (382), Expect = 1.917e-41
Identity = 77/121 (63.64%), Postives = 92/121 (76.03%), Query Frame = 0
Query:   45 RILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCKIM 165
            RILVTGG GYIGSHTVL L+E+G+EV+VVD+L NS EE+LRRV  L G P   +F +ADLLDE ALE VF+ H    A +HFAGLKAVGESV +PL YY NN+ GTL+LL AM  HG + +
Sbjct:    2 RILVTGGTGYIGSHTVLSLLESGHEVIVVDNLANSSEESLRRVAELAGRP--AVFVQADLLDEPALEEVFSAH-PVDAVIHFAGLKAVGESVQEPLNYYYNNIVGTLNLLRAMDSHGVRTI 119          
BLAST of EWM29962.1 vs. NCBI_GenBank
Match: gi|1189383967|gb|OSX71241.1| (hypothetical protein BU14_0574s0012 [Porphyra umbilicalis])

HSP 1 Score: 150.984 bits (380), Expect = 3.752e-41
Identity = 76/118 (64.41%), Postives = 91/118 (77.12%), Query Frame = 0
Query:   46 ILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCK 163
            +LVTGGAGYIGSHTVL LV  G+  VVVD+L NS EE+L+RV  LTG  ++++F   DLL+EEALE+VF     F AC+HFAGLKAVGESV  PL YY NNLTGTL LLN + ++GCK
Sbjct:    6 VLVTGGAGYIGSHTVLELVNEGFTAVVVDNLDNSSEESLKRVSELTGKSDQIVFRHVDLLNEEALEAVFKEF-TFSACIHFAGLKAVGESVKLPLKYYHNNLTGTLILLNLLDKYGCK 122          
BLAST of EWM29962.1 vs. NCBI_GenBank
Match: gi|1081788339|ref|WP_070350096.1| (UDP-glucose 4-epimerase GalE [Arthrobacter sp. SW1] >gi|1079492223|gb|OFI37196.1| UDP-glucose 4-epimerase GalE [Arthrobacter sp. SW1])

HSP 1 Score: 149.828 bits (377), Expect = 8.299e-41
Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = 0
Query:   45 RILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCK 163
            +ILVTGG GYIGSHTVL L+E+G+EVVVVD+LVNS EE+LRRV  L G  +  +F +ADLLDE ALESVF  H    A +HFAGLKAVGESV +PL YY NN+ GTL+LL AM  H  +
Sbjct:    2 KILVTGGTGYIGSHTVLALLESGHEVVVVDNLVNSSEESLRRVAELAG--KAAVFVEADLLDEPALESVFGQH-SVDAVIHFAGLKAVGESVQQPLAYYHNNIVGTLNLLRAMDAHDVR 117          
BLAST of EWM29962.1 vs. NCBI_GenBank
Match: gi|1199533341|ref|WP_087270036.1| (MULTISPECIES: UDP-glucose 4-epimerase GalE [Flavonifractor] >gi|1198422021|gb|OUN10378.1| UDP-glucose 4-epimerase GalE [Flavonifractor sp. An91] >gi|1198528878|gb|OUO14908.1| UDP-glucose 4-epimerase GalE [Flavonifractor sp. An4])

HSP 1 Score: 149.443 bits (376), Expect = 1.247e-40
Identity = 77/118 (65.25%), Postives = 89/118 (75.42%), Query Frame = 0
Query:   46 ILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCK 163
            ILV+GGAGYIGSHT + LV+AGYE+VV D+LVNSCEEA+RRV  + G P  V F KADL D   +E VF  H    A +HFAGLKAVGESV+KPL YY+NNL  TL LLNAM +HG K
Sbjct:    3 ILVSGGAGYIGSHTCVELVQAGYEIVVADNLVNSCEEAVRRVEQIVGKP--VPFEKADLCDPLQVEEVFCRHPEIEAVIHFAGLKAVGESVSKPLEYYSNNLMSTLVLLNAMRKHGVK 118          
BLAST of EWM29962.1 vs. NCBI_GenBank
Match: gi|1199449235|ref|WP_087189266.1| (UDP-glucose 4-epimerase GalE [Flavonifractor sp. An52] >gi|1198493524|gb|OUN80299.1| UDP-glucose 4-epimerase GalE [Flavonifractor sp. An52])

HSP 1 Score: 149.443 bits (376), Expect = 1.418e-40
Identity = 77/118 (65.25%), Postives = 89/118 (75.42%), Query Frame = 0
Query:   46 ILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCK 163
            ILV+GGAGYIGSHT + LV+AGYE+VV D+LVNSCEEA+RRV  + G P  V F KADL D   +E VF  H    A +HFAGLKAVGESV+KPL YY+NNL  TL LLNAM +HG K
Sbjct:    3 ILVSGGAGYIGSHTCVELVQAGYEIVVADNLVNSCEEAVRRVEQIVGKP--VPFEKADLCDPLQVEEVFCRHPEIEAVIHFAGLKAVGESVSKPLEYYSNNLMSTLVLLNAMRKHGVK 118          
BLAST of EWM29962.1 vs. NCBI_GenBank
Match: gi|524734452|emb|CDE36179.1| (uDP-glucose 4-epimerase [Eubacterium sp. CAG:38])

HSP 1 Score: 148.288 bits (373), Expect = 3.745e-40
Identity = 76/118 (64.41%), Postives = 90/118 (76.27%), Query Frame = 0
Query:   46 ILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCK 163
            ILVTGGAGYIGSHTV+ L  AGYEVVVVD+LVNS  EAL+RV  +TG P  V F +AD+ D+EALE +FA      +C+HFAGLKAVGESVAKPL YY NN++G+L L + M  HG K
Sbjct:    3 ILVTGGAGYIGSHTVVELQNAGYEVVVVDNLVNSSREALKRVEKITGKP--VTFYEADINDKEALEKIFAQE-KIESCIHFAGLKAVGESVAKPLEYYMNNISGSLVLFDVMRNHGVK 117          
BLAST of EWM29962.1 vs. NCBI_GenBank
Match: gi|1152010583|ref|WP_078108292.1| (UDP-glucose 4-epimerase GalE [Arthrobacter sp. SRS-W-1-2016] >gi|1151039298|gb|OOP60364.1| UDP-glucose 4-epimerase GalE [Arthrobacter sp. SRS-W-1-2016])

HSP 1 Score: 148.288 bits (373), Expect = 4.075e-40
Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = 0
Query:   45 RILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCK 163
            RILVTGG GYIGSHTVL L+E G+EVVVVD+LVNS EE+LRRVG L G  +   F + DL+DE ALE+VF  H    A +HFAGLKAVGESV +PL YY NN+ GTL+LL AM +HG +
Sbjct:    2 RILVTGGTGYIGSHTVLSLLETGHEVVVVDNLVNSSEESLRRVGELAG--KTAAFHRVDLVDEAALEAVFDQH-SIDAVIHFAGLKAVGESVQEPLNYYYNNIVGTLNLLRAMDKHGVR 117          
BLAST of EWM29962.1 vs. NCBI_GenBank
Match: gi|947976377|ref|WP_056636121.1| (UDP-glucose 4-epimerase GalE [Arthrobacter sp. Soil736] >gi|946393998|gb|KRE44634.1| UDP-glucose 4-epimerase [Arthrobacter sp. Soil736])

HSP 1 Score: 147.902 bits (372), Expect = 4.588e-40
Identity = 77/119 (64.71%), Postives = 92/119 (77.31%), Query Frame = 0
Query:   45 RILVTGGAGYIGSHTVLLLVEAGYEVVVVDSLVNSCEEALRRVGALTGHPEKVIFCKADLLDEEALESVFATHGGFRACVHFAGLKAVGESVAKPLLYYANNLTGTLHLLNAMHRHGCK 163
            +ILVTGG GYIGSHTVL L EAG+EVVV+D+LVNS EE+LRRV  LTG  ++  F   DLLDE A+++VF  H G  A +HFAGLKAVGESV +PL YY NNL GTL+L+ AM RHG +
Sbjct:    2 KILVTGGTGYIGSHTVLSLQEAGHEVVVIDNLVNSSEESLRRVAELTG--KEAAFHNVDLLDEPAVDAVFDRH-GIDAVIHFAGLKAVGESVREPLKYYHNNLVGTLNLIRAMDRHGVR 117          
The following BLAST results are available for this feature:
BLAST of EWM29962.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112558|gb|EWM29962.1|2.687e-135100.00udp-glucose 4-epimerase [Nannochloropsis gaditana][more]
gi|769940464|ref|WP_045073823.1|1.234e-4167.23UDP-glucose 4-epimerase GalE [Arthrobacter sp. IHB... [more]
gi|1124294125|ref|WP_074588306.1|1.917e-4163.64UDP-glucose 4-epimerase GalE [Arthrobacter cupress... [more]
gi|1189383967|gb|OSX71241.1|3.752e-4164.41hypothetical protein BU14_0574s0012 [Porphyra umbi... [more]
gi|1081788339|ref|WP_070350096.1|8.299e-4164.71UDP-glucose 4-epimerase GalE [Arthrobacter sp. SW1... [more]
gi|1199533341|ref|WP_087270036.1|1.247e-4065.25MULTISPECIES: UDP-glucose 4-epimerase GalE [Flavon... [more]
gi|1199449235|ref|WP_087189266.1|1.418e-4065.25UDP-glucose 4-epimerase GalE [Flavonifractor sp. A... [more]
gi|524734452|emb|CDE36179.1|3.745e-4064.41uDP-glucose 4-epimerase [Eubacterium sp. CAG:38][more]
gi|1152010583|ref|WP_078108292.1|4.075e-4064.71UDP-glucose 4-epimerase GalE [Arthrobacter sp. SRS... [more]
gi|947976377|ref|WP_056636121.1|4.588e-4064.71UDP-glucose 4-epimerase GalE [Arthrobacter sp. Soi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna711rna711Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications