rna7109, rna7109 (mRNA) Nannochloropsis gaditana

Overview
Namerna7109
Unique Namerna7109
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1816
Alignment locationCM002470.1:471456..472714 -

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Properties
Property NameValue
Producttranscription elongation factor 1
Orig transcript idgnl|cribi|Naga_100266g2.7303.mrna
Orig protein idgnl|cribi|Naga_100266g2.7303
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:471456..472714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100266g2gene6874Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7109rna7109-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23583.1cds7092Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7109 ID=rna7109|Name=rna7109|organism=Nannochloropsis gaditana|type=mRNA|length=1816bp
AAGTGTGATTAATACCTTTGACAGAACGCAAGTCGTGTGGTTCTTGGAGA
GTGGCATTTATGCATATGTTACTTAGTTTACACTTGTCCAGTCTGGCAAG
AACTCATGATCTTTCTATTTTTTGGGCGGTATATTTGCCGTGTGACGAGC
TTTCAAATTAACGAAGGTTGGATTCCATTCCTGACACGGGCTTCGACGTA
CGACATTTGACACATTGAAACGTACTAAATGTGTAATCAGACTTCCGAAT
TCATTCTACGACAAAATATCACAAATATTAGAGGTGTGACGCTGTTGATC
CTCGTGATTGTATCTCTAACTCAGTAAAATTATATCTTACTGAATCACGA
GACATAATCCAAATATATCGAATCCACCTATACAGATAGATACCGTCCTA
GAACAGCGTCACCATGGTTAGATATTCTACGCCGGCATACAGAGATAGCG
AGGATGATCATCAAGGTGGTCATCAGCTCAAAATACTGTCGCCTTTGCCC
CGTGTCCCCTGGGACCTTCCGCCACTCCCATCGGGTGCTGGCGCGGGTGT
CAGCCCCCCCTCAGTCCGCCAATGTCACCGCGATCCTCAAGATGTCCGTC
ACGAGGCTGCGACTTGTCGTCCCACCCGCAGCCAGAAACGTCGCAGCGTC
GCCGATGCCAAGGAGTATACCCAACGGCCAGTCGAAGAGGAGAGGGAACG
GAGCCTGTCCTCGTCCCAGGGGAGCCGTCCACCACGTCTGTCGGTCTCCC
GGCACGAGGCTCCACCTTACCTTGTTGGAAACCCCTTTATATTGTCCGGA
TATCGACGATGCATTACCCTGCGGGAGGCGTGTCAAGGCTTGTTTTATCA
GCACAATTCTTGGCTGGATACCTGGACAAGTGTGTTTTCTTGGGTGCATT
CGCACGTCTTACTCTTTGTTGCCTCCTACGTTTATGGCGTCTTCCGCCGT
GACTGGCTTTCTGCGATAGTGTTCGCCTCTTTTTACTTGCACGTAGCGTG
GATCCATGCCCCCGCCTCGATCGTCTGCCACCTGGTCGGCAATGCGGGGA
TCTCGCAGCACGTGTACGAGCTGTGTCTGGAACTGGATTATCTCGGCATC
TTCATCGCCTCCGTCATATTGGCGTTTACCCAGGCGGTTTTTGTCTATCC
ATGGTGGGGCACACTCTTGAACGTGCTGCTGGCCATGGGCTTAACGGCGT
ACTTGGTGACACACATCCGTCAAGTTGTGTTGTGCCACATCGGCCGCCTC
CGCATGCTTCTGGAGATTGGCAGCCTCTACCAGCTTCCACTTTGGTTCCA
AGCTTATCAGGACTGCAACTCGCCCTCCATCCCTTCCTCCCTCCCTCCCT
CCTTGCTGTGCGCCTGCGGGATGACGGGTTCACTGGTGGTGGGGGGTCTC
ACGTACGCCCTCCATTTTCCCGAGCGTTTCGCACCCGGGAAGTTCGACGT
TTGGTGGAATAGCCACGCACTCATGCACGTCTGGATCAACGTGGCCATGC
TCTCGGAATTTCTTTTCCTCCTCCACATGTTCCTGCGTCGGTCCTGAGGG
GCGGGGAGGGGGCCGGAAGGAAGACGACCTCGGGACAGGCTGGAACCGAG
GATGGGATGCTTCAAGGAGAACGCAGGAGAGTGAGCGAGGAGGTCGGCCC
TGAGGGGAAAAGAGAGGGGGCGAGGAAGGCGAAGGAGAGGGGGTAGAGGA
GAGGCGGTGGAGGGATGTAGAAGCGCTGGAGGTGAAGGTCTTCTTTCGCG
CCAAAAATGGGTCCGGATGGGACATGTGCCAATAAATAGCGACAACTAGG
TGAGACGTCCTGACGC
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protein sequence of rna7109

>rna7109-protein ID=rna7109-protein|Name=rna7109|organism=Nannochloropsis gaditana|type=polypeptide|length=96bp
MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCR
VCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQVEGDVGEGGM
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mRNA from alignment at CM002470.1:471456..472714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7109 ID=rna7109|Name=rna7109|organism=Nannochloropsis gaditana|type=mRNA|length=1259bp|location=Sequence derived from alignment at CM002470.1:471456..472714- (Nannochloropsis gaditana)
TATGTCTTGGCTCCTGTAATCCTCGCACGACACACCTGCCATTCCGGGTT
CCCACCATGCTGCTGCCCGTTCTGTTCTTTGCCCTCGCCGAGCCTCAGTA
TCAAAGAGACAGCGAGGCTTGATGGGATGAGGCATTATACGACACATCTT
CACCCCACGACGAGGGGGGATGGACGGTGGATGTGGCCCGTTCTCGTGTC
ATGTACTAGAGGAGCTGAATGGTGTGCACGGTAATGTCGGCACGTTAATA
TTGGCGGACCACGCACATAGCAGGCTCATCTACATCGGCGCAGTGTGAAG
AAACGGCAAGCTCTCAGAGGAAAGCGACTGCTACGTAAGAGGTGAAGATA
GAGGCATGGGAGGGCGGAAAAAGGTACGTGTTTGTCGAACGAAGGGGGTG
GGGGGAATCATGATGAAAAGAGAGGTAGCGGAGGAGGTATCCGGGAAAAA
GAAAAATATTTAGTCGAATTTTGGCCGTCCTGTCCCATCTATTGCAGCTT
CCCCGCACATGTAGCCACATCGCCGAGGTTTGCCACGGCACGTGTGTTTC
TGTGGTGTACAGCTCGTTTCGAACCAAATATTTACCCGTTTGCTAATGTT
TTGGCAGCACCACGCTTACGCCCCCCATCCACCCGCCTTCTCTACCTTGT
TTTCACCAGGCCTCCAAAAAAGTCGCAAAAAAGAAACGACCCAGCCTACG
CACGGTTTTTAAATGCGTGCAATGTAACAACGACGGCGTGGTAGAGTGTG
TCATGTGAGTGGTAATTCCCCCGGCCCCCCAGTCTCTCCTCCCCCATAAG
CCTCTCCCTCGTATTCACAAGAAGCACTCAAACTCGTCACCGGCCCTCCA
TTTCAGTCGGAAGGAGCAAGGCACCGGGGAGGTGGTTTGTCGCGTCTGCG
GGGCTTCTTTTATATGTGCCGTCAATTGTGAGTATCAAAATCAATTAGGG
CGGTGGGCGTTTGTGACAGATGTCAGGCAGCCGGTGTTACGTATGTTCGG
GAGTTGTGACTTACAACCTTCCCCCCCTTCCCTCCCTGACGCTCTGACCA
CCTCCCTCCCCCACAGACCTGTCGAAACCCATCGACGTGTACTGCGAGTG
GATCGACGAGTGCGAGCGGATCAGCGGGGAGCAAGAGCAAGTGGAGGGGG
ACGTTGGAGAGGGGGGCATGTAGGAAGGAGGGAGCGAAAAAGGAAGGGAG
GGAGGTGTATAATGGTTATGAAGCATGCATGAAAGTAAAAAAGAGCACAT
CTGGCAAGG
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Coding sequence (CDS) from alignment at CM002470.1:471456..472714-

>rna7109 ID=rna7109|Name=rna7109|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at CM002470.1:471456..472714- (Nannochloropsis gaditana)
ACCTGTCGAAACCCATCGACGTGTACTGCGAGTGGATCGACGAGTGCGAG
CGGATCAGCGGGGAGCAAGAGCAAGTGGAGGGGGACGTTGGAGAGGGGGG
CATGTAGTCGGAAGGAGCAAGGCACCGGGGAGGTGGTTTGTCGCGTCTGC
GGGGCTTCTTTTATATGTGCCGTCAATTGCCTCCAAAAAAGTCGCAAAAA
AGAAACGACCCAGCCTACGCACGGTTTTTAAATGCGTGCAATGTAACAAC
GACGGCGTGGTAGAGTGTGTCATATGGGAGGGCGGAAAAAGACCTGTCGA
AACCCATCGACGTGTACTGCGAGTGGATCGACGAGTGCGAGCGGATCAGC
GGGGAGCAAGAGCAAGTGGAGGGGGACGTTGGAGAGGGGGGCATGTAGTC
GGAAGGAGCAAGGCACCGGGGAGGTGGTTTGTCGCGTCTGCGGGGCTTCT
TTTATATGTGCCGTCAATTGCCTCCAAAAAAGTCGCAAAAAAGAAACGAC
CCAGCCTACGCACGGTTTTTAAATGCGTGCAATGTAACAACGACGGCGTG
GTAGAGTGTGTCATATGGGAGGGCGGAAAAAGACCTGTCGAAACCCATCG
ACGTGTACTGCGAGTGGATCGACGAGTGCGAGCGGATCAGCGGGGAGCAA
GAGCAAGTGGAGGGGGACGTTGGAGAGGGGGGCATGTAGTCGGAAGGAGC
AAGGCACCGGGGAGGTGGTTTGTCGCGTCTGCGGGGCTTCTTTTATATGT
GCCGTCAATTGCCTCCAAAAAAGTCGCAAAAAAGAAACGACCCAGCCTAC
GCACGGTTTTTAAATGCGTGCAATGTAACAACGACGGCGTGGTAGAGTGT
GTCATATGGGAGGGCGGAAAAAGACCTGTCGAAACCCATCGACGTGTACT
GCGAGTGGATCGACGAGTGCGAGCGGATCAGCGGGGAGCAAGAGCAAGTG
GAGGGGGACGTTGGAGAGGGGGGCATGTAGTCGGAAGGAGCAAGGCACCG
GGGAGGTGGTTTGTCGCGTCTGCGGGGCTTCTTTTATATGTGCCGTCAAT
TGCCTCCAAAAAAGTCGCAAAAAAGAAACGACCCAGCCTACGCACGGTTT
TTAAATGCGTGCAATGTAACAACGACGGCGTGGTAGAGTGTGTCATATGG
GAGGGCGGAAAAAG
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Synonyms
Publications