EWM23583.1, cds7092 (CDS) Nannochloropsis gaditana

Overview
NameEWM23583.1
Unique Namecds7092
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:472342..472359 -
Alignment locationCM002470.1:471961..472055 -
Alignment locationCM002470.1:471788..471858 -
Alignment locationCM002470.1:471542..471648 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23583.1
Producttranscription elongation factor 1
Orig transcript idgnl|cribi|Naga_100266g2.7303.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:472342..472359 -
CM002470.1supercontigCM002470.1:471961..472055 -
CM002470.1supercontigCM002470.1:471788..471858 -
CM002470.1supercontigCM002470.1:471542..471648 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR007808Elf1
Homology
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|585104722|gb|EWM23583.1| (transcription elongation factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 192.2 bits (487), Expect = 5.349e-62
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQVEGDVGEGGM 96
            MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQVEGDVGEGGM
Sbjct:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQVEGDVGEGGM 96          
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|298710411|emb|CBJ25475.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 96.2857 bits (238), Expect = 6.668e-24
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISG 82
            MG RKK++KK+  KK  +L  VFKC  CN+D VVEC + K++ T  ++CR+C  ++   +NYL++PIDVY +WIDECE ++ 
Sbjct:    1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNA 82          
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|669136598|ref|XP_008603867.1| (hypothetical protein SDRG_00179 [Saprolegnia diclina VS20] >gi|813143057|ref|XP_012199498.1| hypothetical protein SPRG_04970 [Saprolegnia parasitica CBS 223.65] >gi|530744202|gb|EQC42444.1| hypothetical protein SDRG_00179 [Saprolegnia diclina VS20] >gi|641536004|gb|KDO29904.1| hypothetical protein SPRG_04970 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 92.8189 bits (229), Expect = 8.964e-23
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQ 84
            MG RKK++KK+  +K+  +  VFKC  C++D  VEC + +++  G + CRVC  SF   +NYLS+PIDVY +WIDECE +  EQ
Sbjct:    1 MGRRKKSTKKIVTRKKQVVSRVFKCPFCSHDESVECKMDRDRNIGHLSCRVCSESFQTNINYLSEPIDVYTDWIDECEALHNEQ 84          
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|915692146|ref|XP_013343130.1| (hypothetical protein AUEXF2481DRAFT_30000 [Aureobasidium subglaciale EXF-2481] >gi|662537314|gb|KEQ94623.1| hypothetical protein AUEXF2481DRAFT_30000 [Aureobasidium subglaciale EXF-2481])

HSP 1 Score: 93.9745 bits (232), Expect = 1.213e-22
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQ 86
            MG RK ASK   KKKR +L T F+C+ CN++  V   I K+  TGE+ C+VCG +F    NYLS PIDVY +W+D C+ ++ +  Q
Sbjct:    1 MGKRKSASKPEGKKKRETLSTTFQCLFCNHENSVSVKIDKKASTGELTCKVCGQTFQTVTNYLSAPIDVYSDWVDACDSVAKQAAQ 86          
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|116791582|gb|ABK26033.1| (unknown [Picea sitchensis] >gi|224285524|gb|ACN40482.1| unknown [Picea sitchensis])

HSP 1 Score: 92.0485 bits (227), Expect = 1.373e-22
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISG 82
            MG RK A K  +KKK+  L TVF C  CN++  VEC + ++   GE  CR+C  SF  ++N LS+P+DVYCEWIDECER++ 
Sbjct:    1 MGKRKAAKKPESKKKQEKLSTVFSCPFCNHESSVECRMDRKDLIGEASCRICQESFSTSINALSEPVDVYCEWIDECERVNN 82          
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|662504182|gb|KEQ61799.1| (Elf1-domain-containing protein [Aureobasidium melanogenum CBS 110374])

HSP 1 Score: 93.5893 bits (231), Expect = 1.524e-22
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGE 83
            MG RK ASK  AKKKR +L T F+C+ CN++  +   I K+  TGE+ C+VCG +F    NYLS PIDVY +W+D C+ ++ +
Sbjct:    1 MGKRKSASKPEAKKKREALATTFQCLFCNHENSISVKIDKKASTGELTCKVCGQTFQTVTNYLSAPIDVYSDWVDACDSVAKQ 83          
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|1173959100|gb|OQS05371.1| (hypothetical protein THRCLA_20639 [Thraustotheca clavata])

HSP 1 Score: 91.6633 bits (226), Expect = 2.223e-22
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQ 86
            MG RKK++KK+  +K+  +  VFKC  C++D  VEC + +++  G + CRVC  S+   +NYLS+PIDVY +WIDECE +  EQ +
Sbjct:    1 MGRRKKSTKKIVTRKKQVVSRVFKCPFCSHDESVECKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECEALHNEQSR 86          
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|675212827|ref|XP_008915298.1| (hypothetical protein PPTG_18871 [Phytophthora parasitica INRA-310] >gi|695390993|ref|XP_009519888.1| hypothetical protein PHYSODRAFT_353974 [Phytophthora sojae] >gi|348684785|gb|EGZ24600.1| hypothetical protein PHYSODRAFT_353974 [Phytophthora sojae] >gi|566007902|gb|ETI30813.1| hypothetical protein F443_22102 [Phytophthora parasitica P1569] >gi|567945384|gb|ETK71195.1| hypothetical protein L915_21504 [Phytophthora parasitica] >gi|567973996|gb|ETL24643.1| hypothetical protein L916_21368 [Phytophthora parasitica] >gi|568003511|gb|ETL77859.1| hypothetical protein L917_21226 [Phytophthora parasitica] >gi|568033417|gb|ETM31124.1| hypothetical protein L914_21236 [Phytophthora parasitica] >gi|568084487|gb|ETM99416.1| hypothetical protein PPTG_18871 [Phytophthora parasitica INRA-310] >gi|570311577|gb|ETO59525.1| hypothetical protein F444_22118 [Phytophthora parasitica P1976] >gi|570935343|gb|ETP00600.1| hypothetical protein F441_21996 [Phytophthora parasitica CJ01A1] >gi|570965647|gb|ETP28766.1| hypothetical protein F442_21963 [Phytophthora parasitica P10297] >gi|1214706445|gb|OWZ17988.1| hypothetical protein PHMEG_0008001 [Phytophthora megakarya])

HSP 1 Score: 91.2781 bits (225), Expect = 3.480e-22
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISG 82
            MG RKK++KK+  +K+  + TVFKC  C++D  VEC + +E+  G + CRVC  SF   ++YLS PIDVY +WIDECE ++ 
Sbjct:    1 MGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 82          
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|1173941473|gb|OQR90628.1| (hypothetical protein ACHHYP_05365 [Achlya hypogyna])

HSP 1 Score: 90.8929 bits (224), Expect = 5.454e-22
Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQ 84
            MG RKK++KK+  +K+  +  VFKC  C++D  VEC + +++  G + CRVC  S+   +NYLS+PIDVY +WIDECE +  +Q
Sbjct:    1 MGRRKKSTKKIVTRKKQVVSRVFKCPFCSHDESVECKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECETLHNDQ 84          
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|672189403|ref|XP_008813833.1| (PREDICTED: transcription elongation factor 1 homolog [Phoenix dactylifera] >gi|672189407|ref|XP_008813834.1| PREDICTED: transcription elongation factor 1 homolog [Phoenix dactylifera])

HSP 1 Score: 90.8929 bits (224), Expect = 6.440e-22
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQ 86
            MG RK   K V KK +P L   F C  CN+D  ++C +  +  TGE  CR C A +I ++N+L++PID+Y EW+DECER++G ++ 
Sbjct:    1 MGKRKTRPKVVPKKPQPKLDVSFTCPFCNHDKSIDCSMDMKLKTGEAYCRACKAIYITSINHLTEPIDIYSEWLDECERVNGSEDN 86          
The following BLAST results are available for this feature:
BLAST of EWM23583.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104722|gb|EWM23583.1|5.349e-62100.00transcription elongation factor 1 [Nannochloropsis... [more]
gi|298710411|emb|CBJ25475.1|6.668e-2448.78conserved unknown protein [Ectocarpus siliculosus][more]
gi|669136598|ref|XP_008603867.1|8.964e-2348.81hypothetical protein SDRG_00179 [Saprolegnia dicli... [more]
gi|915692146|ref|XP_013343130.1|1.213e-2247.67hypothetical protein AUEXF2481DRAFT_30000 [Aureoba... [more]
gi|116791582|gb|ABK26033.1|1.373e-2251.22unknown [Picea sitchensis] >gi|224285524|gb|ACN404... [more]
gi|662504182|gb|KEQ61799.1|1.524e-2248.19Elf1-domain-containing protein [Aureobasidium mela... [more]
gi|1173959100|gb|OQS05371.1|2.223e-2246.51hypothetical protein THRCLA_20639 [Thraustotheca c... [more]
gi|675212827|ref|XP_008915298.1|3.480e-2248.78hypothetical protein PPTG_18871 [Phytophthora para... [more]
gi|1173941473|gb|OQR90628.1|5.454e-2246.43hypothetical protein ACHHYP_05365 [Achlya hypogyna... [more]
gi|672189403|ref|XP_008813833.1|6.440e-2244.19PREDICTED: transcription elongation factor 1 homol... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7109rna7109Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications