EWM23583.1, cds7092 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|585104722|gb|EWM23583.1| (transcription elongation factor 1 [Nannochloropsis gaditana]) HSP 1 Score: 192.2 bits (487), Expect = 5.349e-62 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
Query: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQVEGDVGEGGM 96
MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQVEGDVGEGGM
Sbjct: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQVEGDVGEGGM 96
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|298710411|emb|CBJ25475.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 96.2857 bits (238), Expect = 6.668e-24 Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 0
Query: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISG 82
MG RKK++KK+ KK +L VFKC CN+D VVEC + K++ T ++CR+C ++ +NYL++PIDVY +WIDECE ++
Sbjct: 1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNA 82
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|669136598|ref|XP_008603867.1| (hypothetical protein SDRG_00179 [Saprolegnia diclina VS20] >gi|813143057|ref|XP_012199498.1| hypothetical protein SPRG_04970 [Saprolegnia parasitica CBS 223.65] >gi|530744202|gb|EQC42444.1| hypothetical protein SDRG_00179 [Saprolegnia diclina VS20] >gi|641536004|gb|KDO29904.1| hypothetical protein SPRG_04970 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 92.8189 bits (229), Expect = 8.964e-23 Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 0
Query: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQ 84
MG RKK++KK+ +K+ + VFKC C++D VEC + +++ G + CRVC SF +NYLS+PIDVY +WIDECE + EQ
Sbjct: 1 MGRRKKSTKKIVTRKKQVVSRVFKCPFCSHDESVECKMDRDRNIGHLSCRVCSESFQTNINYLSEPIDVYTDWIDECEALHNEQ 84
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|915692146|ref|XP_013343130.1| (hypothetical protein AUEXF2481DRAFT_30000 [Aureobasidium subglaciale EXF-2481] >gi|662537314|gb|KEQ94623.1| hypothetical protein AUEXF2481DRAFT_30000 [Aureobasidium subglaciale EXF-2481]) HSP 1 Score: 93.9745 bits (232), Expect = 1.213e-22 Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0
Query: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQ 86
MG RK ASK KKKR +L T F+C+ CN++ V I K+ TGE+ C+VCG +F NYLS PIDVY +W+D C+ ++ + Q
Sbjct: 1 MGKRKSASKPEGKKKRETLSTTFQCLFCNHENSVSVKIDKKASTGELTCKVCGQTFQTVTNYLSAPIDVYSDWVDACDSVAKQAAQ 86
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|116791582|gb|ABK26033.1| (unknown [Picea sitchensis] >gi|224285524|gb|ACN40482.1| unknown [Picea sitchensis]) HSP 1 Score: 92.0485 bits (227), Expect = 1.373e-22 Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0
Query: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISG 82
MG RK A K +KKK+ L TVF C CN++ VEC + ++ GE CR+C SF ++N LS+P+DVYCEWIDECER++
Sbjct: 1 MGKRKAAKKPESKKKQEKLSTVFSCPFCNHESSVECRMDRKDLIGEASCRICQESFSTSINALSEPVDVYCEWIDECERVNN 82
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|662504182|gb|KEQ61799.1| (Elf1-domain-containing protein [Aureobasidium melanogenum CBS 110374]) HSP 1 Score: 93.5893 bits (231), Expect = 1.524e-22 Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 0
Query: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGE 83
MG RK ASK AKKKR +L T F+C+ CN++ + I K+ TGE+ C+VCG +F NYLS PIDVY +W+D C+ ++ +
Sbjct: 1 MGKRKSASKPEAKKKREALATTFQCLFCNHENSISVKIDKKASTGELTCKVCGQTFQTVTNYLSAPIDVYSDWVDACDSVAKQ 83
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|1173959100|gb|OQS05371.1| (hypothetical protein THRCLA_20639 [Thraustotheca clavata]) HSP 1 Score: 91.6633 bits (226), Expect = 2.223e-22 Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 0
Query: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQ 86
MG RKK++KK+ +K+ + VFKC C++D VEC + +++ G + CRVC S+ +NYLS+PIDVY +WIDECE + EQ +
Sbjct: 1 MGRRKKSTKKIVTRKKQVVSRVFKCPFCSHDESVECKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECEALHNEQSR 86
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|675212827|ref|XP_008915298.1| (hypothetical protein PPTG_18871 [Phytophthora parasitica INRA-310] >gi|695390993|ref|XP_009519888.1| hypothetical protein PHYSODRAFT_353974 [Phytophthora sojae] >gi|348684785|gb|EGZ24600.1| hypothetical protein PHYSODRAFT_353974 [Phytophthora sojae] >gi|566007902|gb|ETI30813.1| hypothetical protein F443_22102 [Phytophthora parasitica P1569] >gi|567945384|gb|ETK71195.1| hypothetical protein L915_21504 [Phytophthora parasitica] >gi|567973996|gb|ETL24643.1| hypothetical protein L916_21368 [Phytophthora parasitica] >gi|568003511|gb|ETL77859.1| hypothetical protein L917_21226 [Phytophthora parasitica] >gi|568033417|gb|ETM31124.1| hypothetical protein L914_21236 [Phytophthora parasitica] >gi|568084487|gb|ETM99416.1| hypothetical protein PPTG_18871 [Phytophthora parasitica INRA-310] >gi|570311577|gb|ETO59525.1| hypothetical protein F444_22118 [Phytophthora parasitica P1976] >gi|570935343|gb|ETP00600.1| hypothetical protein F441_21996 [Phytophthora parasitica CJ01A1] >gi|570965647|gb|ETP28766.1| hypothetical protein F442_21963 [Phytophthora parasitica P10297] >gi|1214706445|gb|OWZ17988.1| hypothetical protein PHMEG_0008001 [Phytophthora megakarya]) HSP 1 Score: 91.2781 bits (225), Expect = 3.480e-22 Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 0
Query: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISG 82
MG RKK++KK+ +K+ + TVFKC C++D VEC + +E+ G + CRVC SF ++YLS PIDVY +WIDECE ++
Sbjct: 1 MGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 82
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|1173941473|gb|OQR90628.1| (hypothetical protein ACHHYP_05365 [Achlya hypogyna]) HSP 1 Score: 90.8929 bits (224), Expect = 5.454e-22 Identity = 39/84 (46.43%), Postives = 58/84 (69.05%), Query Frame = 0
Query: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQ 84
MG RKK++KK+ +K+ + VFKC C++D VEC + +++ G + CRVC S+ +NYLS+PIDVY +WIDECE + +Q
Sbjct: 1 MGRRKKSTKKIVTRKKQVVSRVFKCPFCSHDESVECKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECETLHNDQ 84
BLAST of EWM23583.1 vs. NCBI_GenBank
Match: gi|672189403|ref|XP_008813833.1| (PREDICTED: transcription elongation factor 1 homolog [Phoenix dactylifera] >gi|672189407|ref|XP_008813834.1| PREDICTED: transcription elongation factor 1 homolog [Phoenix dactylifera]) HSP 1 Score: 90.8929 bits (224), Expect = 6.440e-22 Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 0
Query: 1 MGGRKKASKKVAKKKRPSLRTVFKCVQCNNDGVVECVIRKEQGTGEVVCRVCGASFICAVNYLSKPIDVYCEWIDECERISGEQEQ 86
MG RK K V KK +P L F C CN+D ++C + + TGE CR C A +I ++N+L++PID+Y EW+DECER++G ++
Sbjct: 1 MGKRKTRPKVVPKKPQPKLDVSFTCPFCNHDKSIDCSMDMKLKTGEAYCRACKAIYITSINHLTEPIDIYSEWLDECERVNGSEDN 86 The following BLAST results are available for this feature:
BLAST of EWM23583.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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