rna7102, rna7102 (mRNA) Nannochloropsis gaditana

Overview
Namerna7102
Unique Namerna7102
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1690
Alignment locationCM002470.1:449648..451451 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100139g15.4739.mrna
Orig protein idgnl|cribi|Naga_100139g15.4739
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:449648..451451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100139g15gene6866Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23587.1cds7085Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7102rna7102-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7102 ID=rna7102|Name=rna7102|organism=Nannochloropsis gaditana|type=mRNA|length=1690bp
GACCCTGATGGAGGATGGGAATACGAGAAGTCCCGCGCCTTCGACTCAAG
AAAATAAACCTACCGCTGATGCCTCCACCCACTCGAGTGCTACGAGCAAC
CTCGCCAGCTTTCGGAGGAAACTTAACTTACCGCTAGCGGCAGGACCTGA
CATCATGCTGTCTTGGGAGAAAGATGCGTTTTACGCGAAGCAAATCCACA
CTCAATTAAAGGAGCTGGCGGAAGTGGTGCTGGGGGCGGGAATAGCGGAG
CTAGTAGATCCTGAAGTGCAATCTGTCGGCGATCTTTTGTATTACACCCT
CACATACTGCACGGGAGGAAGGCAGAGTTTAGGGCAAGAGTACTGCCGCC
TGATGCTCGTTGAGCAGGTGAATGGGCAGGGAAGGAAAGGAGGAAGGGAA
CTTTTCCTCCCGCTGAGCGCGGTCAGGAGCGTGGTGTTCGTGCTCGGGAC
CGTTTTGACCAACTACGTCTGGGAGCGGGTGATCCGTCGAGAAGGCTGGC
AAGGAGACTACGCGCAGCTCGTCCGTCAGCGGCGGCGGGGCGGTAGAGGC
GGGGACGGAGGAAGGGCAAGAGGTGAAGGAGGGGAAGGGGGCTTGTCTTC
GCCTCCTGCAGCTCCTCGTTCCCACCCACCGGGTCACCCTCCCACCTCCG
CCCCCCTCCTCCAGCGCTGCCTCCAGCGTCTTCGTCGCCTCCTCTCCCTC
CTCCTCTCTTCTCCCCCCTACCTTTTTCTGGCTTCCCTCCTCCCCTCCCC
CCGTGACGCCCTCTTCCGAACCCTGCATCGCCTGCATCTGATGGTCTTCT
TCCTGACCAACCGTTACTTCACACTGGCCATGCGGGTGGCGGGCGCGCGA
ACCATATTCACCCGGGAGATGGGGGGGGAAGGGCCAGAAGGAGAAGGAAG
CGGCCCGCGCCGGGCGAGCTACGTTGCGATTGGTGTCTTGATCCTGATGG
AGATGGGTTTGAGAGCCTCGTCGAGCGTCATGTCGGCCCTGCGTCGGCTG
TGGGAGGAGCATCGTCGGCGGGAGGGCGAGCGTCAACAACATCTACTGGG
TGATGGGTTGGACCCTCCCCCCTCTCTAGTCCACGTAGTCGACCCCCCCG
CGTCGTCCCCCTCCACTCCAGAGACTGAAGCAGGACGCGGAGAAGGACGA
AGCGACCCCGATCGGGGCAGAGACGGACGGGGAAGGCCGGATGAAGCCGG
GGAGAGAAGCAGTTTATTGCACTCCACATCATATACACGCACGCTGCTGA
CAGAGACGCGAGTGCCGTCAGGCGCCGCCGCCTTCGGATACCGGAGTCGG
GGTAACAGCTTGGAGGTGGACAGCTTTCGGGAAGGAGGAATCGAGGAAAG
GAAGGAGAAGAAATGTGCCCTGTGCATGAGTACCCGGAAAAATCCTGCCA
TTACACCCTGTGGACATGTCTTTTGTTGGAAATGCGTCTTGGCCTGGTGC
AGCGAGCAACCCGAGTGTCCGCTCTGTCGGAGCAAGTGTCCTCCTCAGGC
CGTCCTGCACGTGGTCAATTTGGGGATCTAAAGCTGCAATGAGAGAAGTT
TTTATGCCCGTGAATTGAGCGTAATGTTACGCGGATGAGCATATCATGGG
AAAAAGTACCTGTACACTTCATGTGTGCTTGAGATTGAAAGGTGGTTTTT
ATTTACAACGTAACACTGAAGAAGGCCTTTTCTAACTTTT
back to top

protein sequence of rna7102

>rna7102-protein ID=rna7102-protein|Name=rna7102|organism=Nannochloropsis gaditana|type=polypeptide|length=446bp
MIVYARLDFLNSDKLRHVPVQPGHFPTPHSMNHLAIRHLKAWLVCFLVPV
SIRAFKPLSSRPTLARPSHHMPSPGICRNLHPPRPFSSSTAPSSSLLLPR
HAWPQTRDPTPLPPDYPLAAARVGITVLACLLTSYSHTSHQAMCASPVLA
SAAVTLAASLIAPGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILF
EAFIHYRNAALGLGGRLGATAFLAVNLIAASQRHFVVPASSSPFSFSSPT
RFSLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREASDDNAAADPVR
AAAVVGLISALTVGVYGHTSLGSLAAYGGAFVGMSLPSRLLYGAEPVLPP
LSPDSSSDSALPAAGVPTPSLPSHSLTSGKLLASFSLAGALGGAVHGLTL
HLGWWTLPVAGWGGKAGMCSFVGVLIFRGLLRSWSGLKNAWTKRRA
back to top

mRNA from alignment at CM002470.1:449648..451451-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7102 ID=rna7102|Name=rna7102|organism=Nannochloropsis gaditana|type=mRNA|length=1804bp|location=Sequence derived from alignment at CM002470.1:449648..451451- (Nannochloropsis gaditana)
AGCCGACACTTTCATGGATAAATTTCACGATGGGACATCATATTTGCCAC
AATCATGCAAACATATCTGTCTATCCGGCCAAACGTGTGAGATGTGTGCA
CGTTGCCATGTGACGATGTATGCAGCCACATCGTTGCTACATCCTTCCAC
CATACTTGACATCCGCCCCGCCTGAAAATCACGAGGGGGAGACTCGCCTT
TGAAGTTTGAAGTCGCCTACATACTGTGACGTGTAGTCGTTTTTACATTA
TAAGTTTCGACGGGATTTGCGAAGGGATTAATGCCTGCCAATGATAGTGT
ATGCAAGGCTAGATTTCTTGAATTCAGACAAACTGAGACATGTTCCCGTC
CAACCAGGCCATTTCCCAACCCCGCACAGCATGAACCACTTGGCAATAAG
GCACCTCAAGGCTTGGCTTGTATGTTTCCTGGTGCCCGTCTCAATCCGTG
CCTTTAAGCCTCTTTCTTCGCGCCCCACCCTTGCCCGCCCTTCCCACCAC
ATGCCTTCCCCCGGGATTTGCCGCAACCTCCATCCTCCCCGACCCTTTTC
CTCAAGCACTGCACCATCATCTTCCCTCCTCCTTCCTCGTCATGCATGGC
CTCAGACCCGGGATCCGACACCTCTCCCTCCGGACTACCCACTTGCAGCC
GCACGTGTCGGCATCACGGTGCTCGCATGCCTTCTTACCTCCTATTCCCA
CACGTCCCACCAAGCCATGTGTGCCAGCCCCGTCCTCGCCTCGGCCGCTG
TCACCTTGGCAGCAAGTCTGATTGCTCCGGGCCTGGGCCAGGCCGCGATG
TGTGGCTCCTTTGCGGGCATGTCCTCCCCACTGCTACTCCCTTCTTTTGC
CGTGACTTTGGCCACAGGTGTCTGCACCTCCATCCTCTTCGAAGCCTTCA
TTCACTACCGAAACGCCGCCTTGGGTCTGGGCGGACGGCTAGGGGCAACG
GCATTTTTGGCTGTGAATCTTATTGCTGCCTCACAGCGGCACTTCGTGGT
CCCTGCTAGCTCTTCTCCTTTCTCCTTTTCTTCCCCCACCCGATTTTCCC
TGTCACTCCCAGCCCTCCTCCACTTCATAAAGACCTCCCCCTACCTACCC
TTGACCATTATATACGGAGCCTTGGGCTCGGTGGCCACGATCGCTTTGCG
GGAAGCCAGCGACGACAACGCGGCAGCCGATCCTGTGCGGGCCGCGGCCG
TGGTGGGGCTTATCAGTGCCCTGACCGTTGGTGTGTATGGCCACACCAGT
TTGGGTTCTCTGGCTGCCTACGGCGGGGCCTTTGTGGGCATGTCGTTGCC
CTCCCGATTGTTGTACGGCGCGGAGCCGGTCCTTCCCCCTCTGTCCCCCG
ACTCGTCCTCCGATTCCGCCCTCCCAGCCGCTGGAGTTCCCACCCCGTCC
CTCCCTTCCCATTCCTTGACGTCTGGAAAATTATTGGCCTCGTTTTCTCT
TGCGGGGGCTCTGGGAGGGGCAGTGCATGGTCTGACTTTGCATCTCGGGT
GGTGGACCCTGCCTGTCGCTGGATGGGGGGGGAAAGCGGGAATGTGTAGC
TTTGTAGGTGTCTTGATATTTAGAGGGCTGCTGCGAAGCTGGAGCGGGCT
CAAGAACGCGTGGACAAAGCGGAGGGCGTAGAGAAATTGCTTGTGGGACC
CGGGGTAATTTCCCAAAATCATGAAATTGGATAAATAAAGTGCGGGAGCA
GGAAAATAAGCGATCTACGGAAACTAATGCAGCCACAAGAGTTCGCGCGA
GATAAAATTACGCCAAAGTGCACGTCAATTTTATTACTATATTAAAAAGA
CGCA
back to top

Coding sequence (CDS) from alignment at CM002470.1:449648..451451-

>rna7102 ID=rna7102|Name=rna7102|organism=Nannochloropsis gaditana|type=CDS|length=1341bp|location=Sequence derived from alignment at CM002470.1:449648..451451- (Nannochloropsis gaditana)
ATGATAGTGTATGCAAGGCTAGATTTCTTGAATTCAGACAAACTGAGACA
TGTTCCCGTCCAACCAGGCCATTTCCCAACCCCGCACAGCATGAACCACT
TGGCAATAAGGCACCTCAAGGCTTGGCTTGTATGTTTCCTGGTGCCCGTC
TCAATCCGTGCCTTTAAGCCTCTTTCTTCGCGCCCCACCCTTGCCCGCCC
TTCCCACCACATGCCTTCCCCCGGGATTTGCCGCAACCTCCATCCTCCCC
GACCCTTTTCCTCAAGCACTGCACCATCATCTTCCCTCCTCCTTCCTCGT
CATGCATGGCCTCAGACCCGGGATCCGACACCTCTCCCTCCGGACTACCC
ACTTGCAGCCGCACGTGTCGGCATCACGGTGCTCGCATGCCTTCTTACCT
CCTATTCCCACACGTCCCACCAAGCCATGTGTGCCAGCCCCGTCCTCGCC
TCGGCCGCTGTCACCTTGGCAGCAAGTCTGATTGCTCCGGGCCTGGGCCA
GGCCGCGATGTGTGGCTCCTTTGCGGGCATGTCCTCCCCACTGCTACTCC
CTTCTTTTGCCGTGACTTTGGCCACAGGTGTCTGCACCTCCATCCTCTTC
GAAGCCTTCATTCACTACCGAAACGCCGCCTTGGGTCTGGGCGGACGGCT
AGGGGCAACGGCATTTTTGGCTGTGAATCTTATTGCTGCCTCACAGCGGC
ACTTCGTGGTCCCTGCTAGCTCTTCTCCTTTCTCCTTTTCTTCCCCCACC
CGATTTTCCCTGTCACTCCCAGCCCTCCTCCACTTCATAAAGACCTCCCC
CTACCTACCCTTGACCATTATATACGGAGCCTTGGGCTCGGTGGCCACGA
TCGCTTTGCGGGAAGCCAGCGACGACAACGCGGCAGCCGATCCTGTGCGG
GCCGCGGCCGTGGTGGGGCTTATCAGTGCCCTGACCGTTGGTGTGTATGG
CCACACCAGTTTGGGTTCTCTGGCTGCCTACGGCGGGGCCTTTGTGGGCA
TGTCGTTGCCCTCCCGATTGTTGTACGGCGCGGAGCCGGTCCTTCCCCCT
CTGTCCCCCGACTCGTCCTCCGATTCCGCCCTCCCAGCCGCTGGAGTTCC
CACCCCGTCCCTCCCTTCCCATTCCTTGACGTCTGGAAAATTATTGGCCT
CGTTTTCTCTTGCGGGGGCTCTGGGAGGGGCAGTGCATGGTCTGACTTTG
CATCTCGGGTGGTGGACCCTGCCTGTCGCTGGATGGGGGGGGAAAGCGGG
AATGTGTAGCTTTGTAGGTGTCTTGATATTTAGAGGGCTGCTGCGAAGCT
GGAGCGGGCTCAAGAACGCGTGGACAAAGCGGAGGGCGTAG
back to top
Synonyms
Publications