EWM23587.1, cds7085 (CDS) Nannochloropsis gaditana

Overview
NameEWM23587.1
Unique Namecds7085
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:449821..451161 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23587.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100139g15.4739.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:449821..451161 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23587.1 vs. NCBI_GenBank
Match: gi|585104728|gb|EWM23587.1| (hypothetical protein Naga_100139g15 [Nannochloropsis gaditana])

HSP 1 Score: 869.766 bits (2246), Expect = 0.000e+0
Identity = 446/446 (100.00%), Postives = 446/446 (100.00%), Query Frame = 0
Query:    1 MIVYARLDFLNSDKLRHVPVQPGHFPTPHSMNHLAIRHLKAWLVCFLVPVSIRAFKPLSSRPTLARPSHHMPSPGICRNLHPPRPFSSSTAPSSSLLLPRHAWPQTRDPTPLPPDYPLAAARVGITVLACLLTSYSHTSHQAMCASPVLASAAVTLAASLIAPGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILFEAFIHYRNAALGLGGRLGATAFLAVNLIAASQRHFVVPASSSPFSFSSPTRFSLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREASDDNAAADPVRAAAVVGLISALTVGVYGHTSLGSLAAYGGAFVGMSLPSRLLYGAEPVLPPLSPDSSSDSALPAAGVPTPSLPSHSLTSGKLLASFSLAGALGGAVHGLTLHLGWWTLPVAGWGGKAGMCSFVGVLIFRGLLRSWSGLKNAWTKRRA 446
            MIVYARLDFLNSDKLRHVPVQPGHFPTPHSMNHLAIRHLKAWLVCFLVPVSIRAFKPLSSRPTLARPSHHMPSPGICRNLHPPRPFSSSTAPSSSLLLPRHAWPQTRDPTPLPPDYPLAAARVGITVLACLLTSYSHTSHQAMCASPVLASAAVTLAASLIAPGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILFEAFIHYRNAALGLGGRLGATAFLAVNLIAASQRHFVVPASSSPFSFSSPTRFSLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREASDDNAAADPVRAAAVVGLISALTVGVYGHTSLGSLAAYGGAFVGMSLPSRLLYGAEPVLPPLSPDSSSDSALPAAGVPTPSLPSHSLTSGKLLASFSLAGALGGAVHGLTLHLGWWTLPVAGWGGKAGMCSFVGVLIFRGLLRSWSGLKNAWTKRRA
Sbjct:    1 MIVYARLDFLNSDKLRHVPVQPGHFPTPHSMNHLAIRHLKAWLVCFLVPVSIRAFKPLSSRPTLARPSHHMPSPGICRNLHPPRPFSSSTAPSSSLLLPRHAWPQTRDPTPLPPDYPLAAARVGITVLACLLTSYSHTSHQAMCASPVLASAAVTLAASLIAPGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILFEAFIHYRNAALGLGGRLGATAFLAVNLIAASQRHFVVPASSSPFSFSSPTRFSLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREASDDNAAADPVRAAAVVGLISALTVGVYGHTSLGSLAAYGGAFVGMSLPSRLLYGAEPVLPPLSPDSSSDSALPAAGVPTPSLPSHSLTSGKLLASFSLAGALGGAVHGLTLHLGWWTLPVAGWGGKAGMCSFVGVLIFRGLLRSWSGLKNAWTKRRA 446          
BLAST of EWM23587.1 vs. NCBI_GenBank
Match: gi|397639122|gb|EJK73398.1| (hypothetical protein THAOC_04981 [Thalassiosira oceanica])

HSP 1 Score: 206.453 bits (524), Expect = 1.472e-55
Identity = 136/332 (40.96%), Postives = 181/332 (54.52%), Query Frame = 0
Query:  103 WPQTRDPTPLPPDYPLAAARVGITVLACLLTSYSHTSHQAMCASPVLASAAVTL-AASLIAPGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILFEAFIHYRNAALGLGGRLGATAFLAVNLIAASQRHFVVPASSSPFSFSSPTRF---SLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREASDDNAAADPVRAAAVVGLISALTVGVYGHTSLGSLAAYGGAFVGMSLPSRLLYGAEPVLPPLSPDSSSDSALPAAGVPTPSLPSHSLTSGKLLASFSLAGALGGAVHGLTLHLGWWTLPVAGWGGKAGMCSFVGVLIFRGL 430
            WP  RDP  +  ++PL   R+ +T  + + T Y H  +     SPVLAS+AVTL  ++ +   LGQAA CGSFAGMS   LLP+F      G  +S  +E  I+  N  LG+GGRLGATAFLA  + A  +                  RF    L           S      I++  +G+VATI LRE+SDD+AAADPVRA++VVG++ +L +    +    +LA YGG+FVGMSLPSRL+YG  P                  G   P  P    ++  LLASF+ AGA+ G VH LT+H G+WT    GWGGKAG+C+F G  ++RG 
Sbjct:  350 WPLVRDPPGVASEFPLLVTRILVTCFSSVATWYLHLQN---GYSPVLASSAVTLLVSTCLDRRLGQAAFCGSFAGMSGGHLLPNFGSAALLGALSSASYELLININNVCLGIGGRLGATAFLATGIFAKYR----------------GVRFIGRKLRRGVWSSSSGVSSVAISMILFHIMGAVATIMLRESSDDSAAADPVRASSVVGVLGSLFI----NDPTSALALYGGSFVGMSLPSRLMYGNAP------------------GNARPGQPQ---SAANLLASFAGAGAIAGLVHALTIHSGYWT---GGWGGKAGLCAFAGCWVYRGF 634          
BLAST of EWM23587.1 vs. NCBI_GenBank
Match: gi|224000794|ref|XP_002290069.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973491|gb|EED91821.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 195.282 bits (495), Expect = 8.428e-54
Identity = 142/345 (41.16%), Postives = 195/345 (56.52%), Query Frame = 0
Query:   97 LLPRHAWPQTRDPTPLPPDYPLAAARVGITVLACLLTSYSHTSHQAMCASPVLASAAVTL-AASLIAPGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILFEAFIHYRNAALGLGGRLGATAFLAVNLIAASQRHFVVPASSSPFSFSSPTRFSLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREASDDNAAADPVRAAAVVGLISALTVGVYGHTSLGSLAAYGGAFVGMSLPSRLLYGAEPVLPPLSPDSSSDSALPAAGVPTPSLPSHSLTSGKLLASFSLAGALGGAVHGLTLHLGWWTLPVAGWGGKAGMCSFVGVLIFRGLLRSWSGLKNA 440
            LL R  WP  RDP  + PD+PL   R+ IT+L+ L T Y H  +     SPVLAS+A+TL  ++ +   LGQAA CGSFAGMS   L P+F   +  GV  SI +E  IH +N  LG+GGRLGATAFLA +++A   ++  V A             S  L +++  +         + + A+G+VATI LRE+SDD+ AADPVRA++V+GL+ AL   +   TS+  LA YGG+FVGM+LPSRL+YG  P          +  A P   +              LL SF+ AGAL G +HG+T+H         GWGGKAG+C+F G  ++RG    +  ++N 
Sbjct:  136 LLHRIKWPVQRDPPEVSPDFPLLLTRITITILSVLSTWYLHLFNGY---SPVLASSAITLLVSTCLDRRLGQAAFCGSFAGMSGGHLAPNFGTAVLLGVLASINYEVLIHMKNFCLGIGGRLGATAFLATSILA---KYRGVSAVGRKMRKGLWKSGSGGLSSIMVSM---------MAFHAIGAVATIFLRESSDDSGAADPVRASSVIGLLGALF--LKDPTSI--LALYGGSFVGMALPSRLMYGNAP--------GKAKQAQPQTPI-------------GLLLSFAGAGALAGMIHGMTIHW---GYWNGGWGGKAGLCAFAGCWLYRGFGNVYEIVRNG 437          
BLAST of EWM23587.1 vs. NCBI_GenBank
Match: gi|224000792|ref|XP_002290068.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973490|gb|EED91820.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 186.037 bits (471), Expect = 1.206e-48
Identity = 133/368 (36.14%), Postives = 198/368 (53.80%), Query Frame = 0
Query:   74 PGICRNLHPPRPFSSSTAPSSSLLLPRHAWPQTRDPTPLPPDYPLAAARVGITVLACLLTSYSHTSHQAMCASPVLASAAVTL-AASLIAPGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILFEAFIHYRNAALGLGGRLGATAFLAVNLIAASQRHFVVPASSSPFSFSSPTRFSLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREASDDNAAADPVRAAAVVGLISALTVGVYGHTSLGSLAAYGGAFVGMSLPSRLLYGAEPVLPPLSPDSSSDSALPAAGVPTPSLPSHSLTSGKLLASFSLAGALGGAVHGLTLHLGWWTLPVAGWGGKAGMCSFVGVLIFRGLLRSWSGLKNA 440
            P I ++   P+  S   + S+S  L    WP   DP  + P++PL   R  +T+L+ L T Y H  +     SPVLAS+A+TL  ++ +   LGQAA+CG+ AGMS   L P+F   +  GV  SI +E  IH +N  LG+GGRLGATAFLA +++A  +R   V        + S                 S  +   +++ A+G+VATI LRE+SDD  AADPV+A++V+GL+ A+ +          +A YGG+FVGM+LPSRL++G+ P                 A +  P  P        +  SF++AGAL GA+HG+T+H G+W        GK G+C+F G  ++RG   + + ++N 
Sbjct:  338 PSITQHYSRPKVRSQIDSNSASTYLRGVKWPVHSDPLGVSPEFPLLLTRSTVTILSALATWYLHLFN---GCSPVLASSAITLLVSTCVERRLGQAALCGTLAGMSGGHLAPNFGTAVLLGVLASINYEVLIHMKNFCLGIGGRLGATAFLATSVVAKYRRVGSVGRKLRRGIWKSGAG------------GLSSVMITMMVFHAIGAVATICLRESSDDVGAADPVQASSVIGLMGAICLS----NPTAIMALYGGSFVGMALPSRLMHGSAP---------------GKARISQPHTPV------GMFTSFAVAGALAGAIHGMTIHWGYWNGGWG---GKIGLCAFAGCWLYRGFGNALAIVRNG 662          
BLAST of EWM23587.1 vs. NCBI_GenBank
Match: gi|397639121|gb|EJK73397.1| (hypothetical protein THAOC_04980 [Thalassiosira oceanica])

HSP 1 Score: 181.03 bits (458), Expect = 2.197e-48
Identity = 137/334 (41.02%), Postives = 186/334 (55.69%), Query Frame = 0
Query:  103 WPQTRDPTPLPPDYPLAAARVGITVLACLLTSYSHTSHQAMCASPVLASAAVTL-AASLIAPGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILFEAFIHYRNAALGLGGRLGATAFLAVNLIAASQRHFVVPASSSPFSFSSPTRFSLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREASDDNAAADPVRAAAVVGLISALTVGVYGHTSLGSLAAYGGAFVGMSLPSRLLYGAEPVLPPLSPDSSSDSALPAAGVPTPSLPSHSLTSGKLLASFSLAGALGGAVHGLTLHLGWWTLPVAGWGGKAGMCSFVGVLIFRGLLRSWS 435
            WP  RDP  +  ++PL   R+ +T L+ + T Y    +     S VLAS+A+TL  ++ +   LGQAA CGSFAGMS   + P+ +V L   V  S  +E  IH  N+ LG+GGRLGATAFLA +++A  Q   +V        + S    S    ++             I++  LG+VATI LRE+SDD+AAADPVRA++VVGL+ AL +          LA YGG+FVGMSLPSRL+YG  P                  G   P  P  + +   LLASF+ AGA  G +H LT+H G+WT    GWGGKAG+C+F G  ++R +  +WS
Sbjct:  155 WPLVRDPPGVASEFPLLMTRILVTCLSSVGTWYLSLYNGY---SAVLASSALTLLVSTCLDRRLGQAAFCGSFAGMSGGHIAPNLSVALLLSVLASASYEVLIHINNSCLGIGGRLGATAFLATSIVAKYQGVGIVGKKLRRGVWKSGAGVSSVAISM-------------ILFHILGAVATIFLRESSDDSAAADPVRASSVVGLVGALFL----KDPTAILALYGGSFVGMSLPSRLMYGNAP------------------GNARPGQPQGAAS---LLASFAGAGAFAGLIHALTIHSGYWT---GGWGGKAGLCAFAGCWVYRAIQGTWS 444          
BLAST of EWM23587.1 vs. NCBI_GenBank
Match: gi|1072238944|gb|OEU23671.1| (hypothetical protein FRACYDRAFT_177647 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 157.532 bits (397), Expect = 1.222e-40
Identity = 126/338 (37.28%), Postives = 172/338 (50.89%), Query Frame = 0
Query:  103 WPQTRDPTPLPPDYPLAAARVGITVLAC--------LLTSYSHTSHQAMCASPVLASAAVTLAASLI-APGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILFEAFIHYRNAALGLGG-RLGATAFLAVNLIAASQRHFVVPASSSPFSFSSPTRFSLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREASDDNA-AADPVRAAAVVGLISALTVGVYGHTSLGSLAAYGGAFVGMSLPSRLLYGAEPVLPPLSPDSSSDSALPAAGVPTPSLPSHSLTSGKLLASFSLAGALGGAVHGLTLHLGWWTL-PVAGWGGKAGMCSFVGVLIFR 428
            +  T DP  +  DYPL   R+ I + +C        LLT+Y H       A+ V+ S+AVTL  S++    LGQAA+CGSFAGM S  ++P+  + L  G  TSIL+E    +    LG+GG R G TAF+            V+P+  +    SS  R S  L  L      +  LP+   Y A+GS+ATI LRE SDD A A DPVRA+AV+GL  AL   +  +  +  LA YGG+ VGMSLPS+L+          S    S  +   + V                 +F +AGA  G +HG T+    W+    A WGGKAG C+F+G +I+R
Sbjct:    2 FTTTNDPKGMSSDYPLGITRMLIIIGSCYLTWFVPQLLTNYPHH------ATNVMVSSAVTLVCSMMFDKRLGQAALCGSFAGMCSTSIIPTTKLALILGSITSILYEIMPFF----LGVGGERSGITAFI------------VLPSLLNGIGISSSYRGSKRLLKLSALNIHTTLLPMAFWY-AIGSIATIVLREISDDTAVAVDPVRASAVIGLAGAL---LLKYDKIAVLAVYGGSIVGMSLPSKLMMNNRSSFSSSSSSLLSKISKILSLV----------------LAFGIAGAFSGLIHGATIDWKLWSDHGGASWGGKAGTCAFLGCIIYR 297          
BLAST of EWM23587.1 vs. NCBI_GenBank
Match: gi|551569158|ref|XP_005770534.1| (hypothetical protein EMIHUDRAFT_196179 [Emiliania huxleyi CCMP1516] >gi|485621662|gb|EOD18105.1| hypothetical protein EMIHUDRAFT_196179 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 67.781 bits (164), Expect = 7.054e-9
Identity = 81/239 (33.89%), Postives = 108/239 (45.19%), Query Frame = 0
Query:  126 TVLACLLTSYSHTSHQAMCASPVLASAAVTLAASLIAPGLGQAAMCGSFAGMSSPLLLPSFAVTLATGVCTSILFEAFIHYRNAALGLGGRLGATAFLAVNLIAASQRHFVVPASSSPFSFSSPTRFSLSLPALLHFIKTSPYLPLTIIYGALGSVATIALREA--SDDNAAADPVRAAAVVGLISALTV----------GVYGHTSLGSLAAYGGAFVGMS----LPSRLLYGAEPVL 348
            +VL  L T  + +++       V ASA+VT+ A+L       A MC SFAG  S  ++P      A G  T++ F+AF+  +    G GGRLG  AF+AVNL A  Q    V        F       +S  A + F+       + +     GS  TI LR    S DN    P  AAA VGL+ AL +             G +   S A YGGAFVGMS    +P+ L + A  VL
Sbjct:    8 SVLILLSTLLTWSANNVGGLGAVTASASVTMLAALAHKQSAAAVMCASFAGWVSSEVIPDVLWASALGAVTALTFQAFVVLKIGE-GWGGRLGLIAFIAVNLTAVCQDLGRV-----EHLFEGERYAVVSGDAAVWFVF------VCLASTTFGSFTTIYLRCNVPSLDN----PAAAAAFVGLLGALVMSGIPTSLLFANFGGKSGEVSAAVYGGAFVGMSSKNHVPNYLAFLATGVL 230          
The following BLAST results are available for this feature:
BLAST of EWM23587.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585104728|gb|EWM23587.1|0.000e+0100.00hypothetical protein Naga_100139g15 [Nannochlorops... [more]
gi|397639122|gb|EJK73398.1|1.472e-5540.96hypothetical protein THAOC_04981 [Thalassiosira oc... [more]
gi|224000794|ref|XP_002290069.1|8.428e-5441.16predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|224000792|ref|XP_002290068.1|1.206e-4836.14predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397639121|gb|EJK73397.1|2.197e-4841.02hypothetical protein THAOC_04980 [Thalassiosira oc... [more]
gi|1072238944|gb|OEU23671.1|1.222e-4037.28hypothetical protein FRACYDRAFT_177647 [Fragilario... [more]
gi|551569158|ref|XP_005770534.1|7.054e-933.89hypothetical protein EMIHUDRAFT_196179 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7102rna7102Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications