rna7099, rna7099 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7099
Unique Name	rna7099
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3258
Alignment location	CM002470.1:443724..444558 +

Link to JBrowse

Properties


Property Name	Value
Product	h aca ribonucleoprotein complex subunit 3
Orig transcript id	gnl\|cribi\|Naga_100139g12.4746.mrna
Orig protein id	gnl\|cribi\|Naga_100139g12.4746
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:443724..444558 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100139g12	gene6863	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7099	rna7099-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23594.1	cds7082	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:443724..444558+
coding sequence from alignment at CM002470.1:443724..444558+

mRNA sequence

>rna7099 ID=rna7099|Name=rna7099|organism=Nannochloropsis gaditana|type=mRNA|length=3258bp
GGAAGATTTTGCGAGTTCAAGCCTCGACTCCGACTCTCCTTGGCCAGATG
AAGGTCACAAAATCCCGTCAAGACCAGAAGCCGAGTCGTATTCCACGGAC
AAGATGTATATTTAATACAAATTATATCACGGAAGCATTGGCATATTTTC
CTTGAAAGAGAGAGGGTGAATTCTGCGGATCCTGTTCCTATCCACAGAAG
CCAGACAGCCGGGCTTGCGCTGGTCTTCGCCTCTCCCTCGATTTTTCATC
ACCCTCGACCGCACTTGGTTTGCCATCTTTGTCTCATTTCCCCTGAATAT
TGTTCGAGCATTGCTTTGTACATATTCGTCACTACTACTCGGGCAGCAGC
AGCCACATCGTTTGGCATTATTGGTTCTGTGGTCGCTCCGCGTTTGTGCT
GAGCGGACAGAAACCGAGCCTCGCCCTGCGAGGAAGGAGCTTGGAAATCC
AATTTAGGGTGCTAATTGTCGCCACGTGTAGATTGTGGCTCCATGGAAAA
CTTACCACTTTGTCTTCGACATGCTCTTTTCTATGTCTTATCACCAGAAT
AGGTGGCAAGAACCTGTGAAAGCTGCACAGAATTGTCTGCGTCATGCAAC
CAGCCAGAGCTGCACGAGCCGACGTTTGACAACAGAAAAACGGAAAGGGG
AAGGAAGACTGGGGGGGGAAACGGTGAAAAGCAGCGACCAAGCAGCACGA
GGGATCCATTAAAAAGGCGAAGAAAACGCCATTTATTGCAGCATCAGTGC
ATGCAAGATGTATGGCCTCAATAAGGCGTGCGAGGACTCAGTTCTCGCGG
CGGCGTGTCACGAGACACTAGAAATGGAGGATCTGGAGGCTCTCGCGACT
TGCGCAAAAAGCACCTATTCGGGAGATGTCGGAGGGGATACATGGATTCA
GAGCAGGCGTCCCTCGCGAAGTTCTTTTTACTTAAAGACAGGCCTCTTTC
TGCCGCCAGATGTGACATTGCATAACATGAAACACTACGGGCGGCGGCAT
TTCCTGAAAATGCGCGAGTCGGAGATGCACATATATGCCTGTGATCCTTG
CTACGAAGAACGGCAAATCGAACTCCGCCCAGACATGCGTGCCCAGCTCG
TAGATTGGCTTATGGAGGTTTGCGCCAATTTTTCAGTCCATCGTCGCACT
TTCCAAGCAGCGGTAAATCACTGCGATCGCTACCTCTCTCTCTGTGCCAG
GGGGTTCCCCAAACAGCGTCTCCAGCTCCTGGCCATTACGGCCCTCTTTG
TCGCTGCCAAGATGGACGAGGTGTATCCGCCGAAAGCCCACGACCTTGCC
GAGGCGACCGCGGGTGCATTCCATGCCCGAGACCTTGTAGTTTTTGAGCA
GGATCTCTTGACCACCCTCTCTTGGAATTTGACCCCCCCCACCCCGGACG
ACTGGGCAGAGTGGTACTTCCTCGCCTTCCTCGAGCGGGGCCTCCCCGCT
GCCGCCACCGAGATGAAAGCCGCCTCCGCTCCCTCTCTGTCCCAGCAGGA
TCTTTCCTCCCTCGCCCTCCTCCAGCACCTTCCCACAGGGATCGCTCAGA
AGGTCCAAGTCTTGCTCGATCTGGCCCTCCTCGACGTGACTTCCATCCAC
TTCTTCCCATCCATGCTGGCCGCGGCTGCCCTCTACGTGCTCCTCCCTCC
CGTCTTTTACCCCGCCCTCGCCCTGGCCACCGGCTATCCTCCCAACGACA
AGGCGCTTGAGCATTGCAAGGCCTATTTGACCTTCCTCGCCACGGGGCTC
TTCGATTCGTCCCTCCCTTTGCAAGCATTGCCTCTAAGCCGAAGGCATTT
GCAGCACGGCCAACCAGGGCAAAGGGCGGGCGGCGGTTTTGGGTGGACCC
CTGAAGCGTCGGAGGCGGCGCAGAGTGGAGTGCCCCTGTGGGACAAGCAC
AGCCTGCAAAGCCATCCGTCCCGGCTCCTGCCTCACCTGCTTGGACGCAT
CTCTGCCATCTCGGACCACTGCGACGATCTACCTCCCCCACCACCACACG
CCCCCAAGACGCAGGGCGCCCAGGCTGACAACCCCGCCGGAAATGCCGCG
GCCCTTGCCACGTCCTCTTTGAGCCCCCCCTGCTCTTCGGCCAGTCCCTC
AGCATCCACACTCCCTTCGGCAACCAGGGCCCCTGCTGCGCTTGCCGACC
TGGTCACTCCTATCCATGCAAAGGCTCGATTGCTGTCTCCACTTCCCTCG
TTCCTGGGCTATCGGTCCGTCTCGAGTAAGAATTTGATTGCCGGGAGAAA
AGGACGATGCGACGAGTGGGAGGATGGGGAGGCAATGTTTATGGAGACGC
TGGAGATGTGGCCCATGGATGAGTCTGAAAATGGCGAGGAAACAGAGGAG
GAGGAGGAGGAGGAGGAGGGAGGGGCCGAAGAGGAGGAGGAGGAGAAGGG
AGGGGCGGAAGAGGAGGAGGAGGGAAGAAAAGGCATGGATGAGGATATTT
TTGGGCACTCGCTGGAGCTGCACGAGGAGTGGGAGTCCGGACGGAGGGGA
AGGGAGAGGAAGGCGGGAAGATGTGGACTGGGACAAGATAAGGGCAGGGG
GGCTGGTCCCCAATCACTGCGCCTGGAGGCCTTGGATGGGGAGGCGAGTG
AGAACGAGTTGGGCTGGAGCATGGCCACCACTGTGGACCCGCAGACCACG
CGTGACTCTGTCTTTTCCTTCTTTTCGCTGGAAGGGACAGAGGGCGGGCA
AGACGGCGGGCACGGCCTTGGCTCGGGAAGAGGAAGTGAAGAAATGCTTG
GATGGCAGCACGAAGTGCGCGAGAGGTTTGGCGAGGACTGCACCAACACT
CAGGAATCGTGCGGCGAGGGCGAAGAGCTAGAAGAGATGCGGAATGTCGC
CCTCTCTTCTCCATGTCTGACGCCGATTTTCTGCCCAGACGAGGCCAAGG
TCGCGTCAGGCCTAGGGGCTTCGGCAACGACGACGGCCCCATGAAGAGAG
CGATGAAGTATTTAACAGCACTAGGCTATAGATTCTTGATTAGTGTGGAT
ACCCAGTAGAAAACAGATTGACACTTGGTTCTGCAGGGAGCAGACGCATA
TTTTGGAAAGCAGCCAGCATGTGTTCTCATCGCAGGAAACTTGAAAACTG
ATTCCAAGACTGAAAATTAGGCTTGCTAGAAAGTATCCTTCCGACAGGGG
CAATTCGTGAAAAATAATTGAAAAGAGCTATCTGAACTGTGGAATCCAGT
AGCTTCTATAACAATTTGAAAAGTCAGCCGTGAAATGATCATATCGTCTG
GAAATGCT

protein sequence of rna7099

>rna7099-protein ID=rna7099-protein|Name=rna7099|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGKRPKLCPSSVPIWEGGF
DTPSVVLRAISNCRQVIATRRDDWRVKPFAARTIPSLLSLKLSFLLTPPS
YILPLAQQLAFPRTISFLSSD

mRNA from alignment at CM002470.1:443724..444558+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7099 ID=rna7099|Name=rna7099|organism=Nannochloropsis gaditana|type=mRNA|length=835bp|location=Sequence derived from alignment at CM002470.1:443724..444558+ (Nannochloropsis gaditana)
AGCGATCAGCCACCGTCCTGCAAAGCTGACATAAGTTTACTTTGGTCTCG
GTAGGAGTAATTCATTGCAGTAACACCTATATCCTTATGATGCAGTTAAG
AGGTATAGCGTGGCGAAAGCACGCGGTGGCTAAGCAAGTAATAAAAACTG
CTTGAACGAACGGCAAGGATACATACACCATCCTTCTCGTCCTGTACCAC
AACATGACACAGGAAAGAGATGCATCTCATGTACTATCTGAATGGGGAAG
GCAAACGCGTGTACACATTAAAAAAGGAAGCTCCAGATGGGCAGATCACG
TACTCGGCACACCCAGGTAAGAGACCAAAGCTTTGCCCGAGTAGTGTGCC
AatatgggagggaggttttgACACGCCTTCCGTGGTTCTTCGTGCCATTT
CCAACTGTCGACAAGTCATAGCCACGAGGAGAGATGATTGGCGGGTGAAG
CCTTTCGCGGCTCGTAccatcccatccctcctgtctctcaAGCTGTCATT
CCTCCTGACCCCTCCTTCATAtatccttcctctcgcccaACAGCTCGCTT
TTCCCCGGACGATAAGTTTTCTAAGCAGCGATTGACTTTGAAAAAACGCT
TCAATCTTCTTCCAACGCAGCAAGCGGAGCGCGTGCTGTGAGAGGAGTCT
TCATTGAAAATGGTTTTGGCGGGCGGAGTATGTAAGGGGTGTCATGCGAG
GCAGGTCGAGCGCCCAAAGCGTCTATGTGTACAGAACAAATAAATTGAGA
CATGCAGATACGCTTTGAAATGCTCTTAGCTTCTCTGGTGCAGATCCACT
GACTGGGTTCTTCCTTTACTTCGCGtcgtgcttcc

Coding sequence (CDS) from alignment at CM002470.1:443724..444558+

>rna7099 ID=rna7099|Name=rna7099|organism=Nannochloropsis gaditana|type=CDS|length=366bp|location=Sequence derived from alignment at CM002470.1:443724..444558+ (Nannochloropsis gaditana)
ATGCATCTCATGTACTATCTGAATGGGGAAGGCAAACGCGTGTACACATT
AAAAAAGGAAGCTCCAGATGGGCAGATCACGTACTCGGCACACCCAGGTA
AGAGACCAAAGCTTTGCCCGAGTAGTGTGCCAatatgggagggaggtttt
gACACGCCTTCCGTGGTTCTTCGTGCCATTTCCAACTGTCGACAAGTCAT
AGCCACGAGGAGAGATGATTGGCGGGTGAAGCCTTTCGCGGCTCGTAcca
tcccatccctcctgtctctcaAGCTGTCATTCCTCCTGACCCCTCCTTCA
TAtatccttcctctcgcccaACAGCTCGCTTTTCCCCGGACGATAAGTTT
TCTAAGCAGCGATTGA

Synonyms

Publications