EWM23594.1, cds7082 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|585104735|gb|EWM23594.1| (h aca ribonucleoprotein complex subunit 3 [Nannochloropsis gaditana]) HSP 1 Score: 249.595 bits (636), Expect = 6.100e-84 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 Query: 1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGKRPKLCPSSVPIWEGGFDTPSVVLRAISNCRQVIATRRDDWRVKPFAARTIPSLLSLKLSFLLTPPSYILPLAQQLAFPRTISFLSSD 121 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGKRPKLCPSSVPIWEGGFDTPSVVLRAISNCRQVIATRRDDWRVKPFAARTIPSLLSLKLSFLLTPPSYILPLAQQLAFPRTISFLSSD Sbjct: 1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGKRPKLCPSSVPIWEGGFDTPSVVLRAISNCRQVIATRRDDWRVKPFAARTIPSLLSLKLSFLLTPPSYILPLAQQLAFPRTISFLSSD 121
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|19114330|ref|NP_593418.1| (snoRNP pseudouridylase box H/ACA snoRNP complex protein (predicted) [Schizosaccharomyces pombe 972h-] >gi|54036210|sp|Q9P7M5.1|NOP10_SCHPO RecName: Full=H/ACA ribonucleoprotein complex subunit 3; AltName: Full=Nucleolar protein 10; AltName: Full=Nucleolar protein family A member 3; AltName: Full=snoRNP protein nop10 >gi|7106108|emb|CAB76034.1| snoRNP pseudouridylase box H/ACA snoRNP complex protein (predicted) [Schizosaccharomyces pombe]) HSP 1 Score: 59.3066 bits (142), Expect = 1.514e-9 Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0 Query: 1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34 MHLMYYLN EGKRVYTLKK +PDG++T S+HP + Sbjct: 1 MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPAR 34
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|213402143|ref|XP_002171844.1| (small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces japonicus yFS275] >gi|211999891|gb|EEB05551.1| small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces japonicus yFS275]) HSP 1 Score: 58.9214 bits (141), Expect = 2.492e-9 Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0 Query: 1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34 MHLMYYLN EGKRVYTLKK APDG+ T+S+HP + Sbjct: 1 MHLMYYLNDEGKRVYTLKKFAPDGKPTHSSHPAR 34
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|891602340|ref|XP_013025737.1| (small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces cryophilus OY26] >gi|528315134|gb|EPY49715.1| small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces cryophilus OY26]) HSP 1 Score: 58.151 bits (139), Expect = 5.202e-9 Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0 Query: 1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34 MHLMYYLN EGKR+YTLKK AP+G+ T S+HP + Sbjct: 1 MHLMYYLNEEGKRIYTLKKRAPNGKATVSSHPAR 34
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|891545402|ref|XP_013016350.1| (small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces octosporus yFS286] >gi|528065362|gb|EPX74924.1| small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces octosporus yFS286]) HSP 1 Score: 57.7658 bits (138), Expect = 6.186e-9 Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0 Query: 1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34 MHLMYY+N EGKRVYTLKK AP+G+ T S+HP + Sbjct: 1 MHLMYYVNDEGKRVYTLKKRAPNGKATVSSHPAR 34
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|1000777715|gb|KXN68998.1| (Nop10p-domain-containing protein [Conidiobolus coronatus NRRL 28638]) HSP 1 Score: 56.225 bits (134), Expect = 3.094e-8 Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0 Query: 1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34 MHLMYY N +G+RVYTLKK+APDG T SAHP + Sbjct: 1 MHLMYYKNEKGERVYTLKKQAPDGAATLSAHPAR 34
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|1183406353|gb|ORY30890.1| (Nop10p-domain-containing protein [Rhizoclosmatium globosum]) HSP 1 Score: 55.8398 bits (133), Expect = 3.307e-8 Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0 Query: 1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34 MHLMYY + EGKR+YTLKK APDG++T SAHP + Sbjct: 1 MHLMYYDSPEGKRIYTLKKVAPDGKVTKSAHPAR 34
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|1188070663|emb|SMN19722.1| (similar to Saccharomyces cerevisiae YHR072W-A NOP10 Constituent of small nucleolar ribonucleoprotein particles containing H/ACA-type snoRNAs [Kazachstania saulgeensis]) HSP 1 Score: 55.8398 bits (133), Expect = 3.569e-8 Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0 Query: 1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34 MHLMY L+ EGKRVYTLKK A DG+IT SAHP + Sbjct: 1 MHLMYTLDNEGKRVYTLKKIAEDGEITKSAHPAR 34
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|1066401723|dbj|BAV58192.1| (H/ACA ribonucleoprotein complex subunit 3 [Ulva sp. SAP114778]) HSP 1 Score: 56.9954 bits (136), Expect = 4.257e-8 Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0 Query: 1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34 M+LMYYL+ EGKRVYTL KEAPDG+ T SAHP + Sbjct: 45 MYLMYYLDAEGKRVYTLNKEAPDGKPTVSAHPAR 78
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|1183509986|gb|ORZ33236.1| (H/ACA ribonucleo protein complex, subunit Nop10 [Catenaria anguillulae PL171]) HSP 1 Score: 54.6842 bits (130), Expect = 9.374e-8 Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 0 Query: 1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34 MHLMY+LN EGKRVYTLKK G++T SAHP + Sbjct: 1 MHLMYHLNAEGKRVYTLKKSTETGEMTKSAHPAR 34 The following BLAST results are available for this feature:
BLAST of EWM23594.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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