EWM23594.1, cds7082 (CDS) Nannochloropsis gaditana

Overview
NameEWM23594.1
Unique Namecds7082
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:443943..444308 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23594.1
Producth aca ribonucleoprotein complex subunit 3
Orig transcript idgnl|cribi|Naga_100139g12.4746.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:443943..444308 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0042254ribosome biogenesis
GO:0001522pseudouridine synthesis
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
GO:0072588box H/ACA RNP complex
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0030515snoRNA binding
Vocabulary: INTERPRO
TermDefinition
IPR007264H/ACA_rnp_Nop10
Homology
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|585104735|gb|EWM23594.1| (h aca ribonucleoprotein complex subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 249.595 bits (636), Expect = 6.100e-84
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
Query:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGKRPKLCPSSVPIWEGGFDTPSVVLRAISNCRQVIATRRDDWRVKPFAARTIPSLLSLKLSFLLTPPSYILPLAQQLAFPRTISFLSSD 121
            MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGKRPKLCPSSVPIWEGGFDTPSVVLRAISNCRQVIATRRDDWRVKPFAARTIPSLLSLKLSFLLTPPSYILPLAQQLAFPRTISFLSSD
Sbjct:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGKRPKLCPSSVPIWEGGFDTPSVVLRAISNCRQVIATRRDDWRVKPFAARTIPSLLSLKLSFLLTPPSYILPLAQQLAFPRTISFLSSD 121          
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|19114330|ref|NP_593418.1| (snoRNP pseudouridylase box H/ACA snoRNP complex protein (predicted) [Schizosaccharomyces pombe 972h-] >gi|54036210|sp|Q9P7M5.1|NOP10_SCHPO RecName: Full=H/ACA ribonucleoprotein complex subunit 3; AltName: Full=Nucleolar protein 10; AltName: Full=Nucleolar protein family A member 3; AltName: Full=snoRNP protein nop10 >gi|7106108|emb|CAB76034.1| snoRNP pseudouridylase box H/ACA snoRNP complex protein (predicted) [Schizosaccharomyces pombe])

HSP 1 Score: 59.3066 bits (142), Expect = 1.514e-9
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0
Query:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34
            MHLMYYLN EGKRVYTLKK +PDG++T S+HP +
Sbjct:    1 MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPAR 34          
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|213402143|ref|XP_002171844.1| (small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces japonicus yFS275] >gi|211999891|gb|EEB05551.1| small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces japonicus yFS275])

HSP 1 Score: 58.9214 bits (141), Expect = 2.492e-9
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0
Query:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34
            MHLMYYLN EGKRVYTLKK APDG+ T+S+HP +
Sbjct:    1 MHLMYYLNDEGKRVYTLKKFAPDGKPTHSSHPAR 34          
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|891602340|ref|XP_013025737.1| (small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces cryophilus OY26] >gi|528315134|gb|EPY49715.1| small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces cryophilus OY26])

HSP 1 Score: 58.151 bits (139), Expect = 5.202e-9
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0
Query:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34
            MHLMYYLN EGKR+YTLKK AP+G+ T S+HP +
Sbjct:    1 MHLMYYLNEEGKRIYTLKKRAPNGKATVSSHPAR 34          
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|891545402|ref|XP_013016350.1| (small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces octosporus yFS286] >gi|528065362|gb|EPX74924.1| small nucleolar ribonucleoprotein Nop10 [Schizosaccharomyces octosporus yFS286])

HSP 1 Score: 57.7658 bits (138), Expect = 6.186e-9
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0
Query:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34
            MHLMYY+N EGKRVYTLKK AP+G+ T S+HP +
Sbjct:    1 MHLMYYVNDEGKRVYTLKKRAPNGKATVSSHPAR 34          
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|1000777715|gb|KXN68998.1| (Nop10p-domain-containing protein [Conidiobolus coronatus NRRL 28638])

HSP 1 Score: 56.225 bits (134), Expect = 3.094e-8
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34
            MHLMYY N +G+RVYTLKK+APDG  T SAHP +
Sbjct:    1 MHLMYYKNEKGERVYTLKKQAPDGAATLSAHPAR 34          
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|1183406353|gb|ORY30890.1| (Nop10p-domain-containing protein [Rhizoclosmatium globosum])

HSP 1 Score: 55.8398 bits (133), Expect = 3.307e-8
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0
Query:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34
            MHLMYY + EGKR+YTLKK APDG++T SAHP +
Sbjct:    1 MHLMYYDSPEGKRIYTLKKVAPDGKVTKSAHPAR 34          
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|1188070663|emb|SMN19722.1| (similar to Saccharomyces cerevisiae YHR072W-A NOP10 Constituent of small nucleolar ribonucleoprotein particles containing H/ACA-type snoRNAs [Kazachstania saulgeensis])

HSP 1 Score: 55.8398 bits (133), Expect = 3.569e-8
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34
            MHLMY L+ EGKRVYTLKK A DG+IT SAHP +
Sbjct:    1 MHLMYTLDNEGKRVYTLKKIAEDGEITKSAHPAR 34          
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|1066401723|dbj|BAV58192.1| (H/ACA ribonucleoprotein complex subunit 3 [Ulva sp. SAP114778])

HSP 1 Score: 56.9954 bits (136), Expect = 4.257e-8
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0
Query:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34
            M+LMYYL+ EGKRVYTL KEAPDG+ T SAHP +
Sbjct:   45 MYLMYYLDAEGKRVYTLNKEAPDGKPTVSAHPAR 78          
BLAST of EWM23594.1 vs. NCBI_GenBank
Match: gi|1183509986|gb|ORZ33236.1| (H/ACA ribonucleo protein complex, subunit Nop10 [Catenaria anguillulae PL171])

HSP 1 Score: 54.6842 bits (130), Expect = 9.374e-8
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 0
Query:    1 MHLMYYLNGEGKRVYTLKKEAPDGQITYSAHPGK 34
            MHLMY+LN EGKRVYTLKK    G++T SAHP +
Sbjct:    1 MHLMYHLNAEGKRVYTLKKSTETGEMTKSAHPAR 34          
The following BLAST results are available for this feature:
BLAST of EWM23594.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104735|gb|EWM23594.1|6.100e-84100.00h aca ribonucleoprotein complex subunit 3 [Nannoch... [more]
gi|19114330|ref|NP_593418.1|1.514e-973.53snoRNP pseudouridylase box H/ACA snoRNP complex pr... [more]
gi|213402143|ref|XP_002171844.1|2.492e-976.47small nucleolar ribonucleoprotein Nop10 [Schizosac... [more]
gi|891602340|ref|XP_013025737.1|5.202e-970.59small nucleolar ribonucleoprotein Nop10 [Schizosac... [more]
gi|891545402|ref|XP_013016350.1|6.186e-970.59small nucleolar ribonucleoprotein Nop10 [Schizosac... [more]
gi|1000777715|gb|KXN68998.1|3.094e-870.59Nop10p-domain-containing protein [Conidiobolus cor... [more]
gi|1183406353|gb|ORY30890.1|3.307e-870.59Nop10p-domain-containing protein [Rhizoclosmatium ... [more]
gi|1188070663|emb|SMN19722.1|3.569e-873.53similar to Saccharomyces cerevisiae YHR072W-A NOP1... [more]
gi|1066401723|dbj|BAV58192.1|4.257e-873.53H/ACA ribonucleoprotein complex subunit 3 [Ulva sp... [more]
gi|1183509986|gb|ORZ33236.1|9.374e-867.65H/ACA ribonucleo protein complex, subunit Nop10 [C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7099rna7099Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications