|
|
Properties
| Property Name | Value |
|---|
| Product | nuclear y ccaat-box binding factor c subunit nf yc |
| Orig transcript id | gnl|cribi|Naga_100139g10.4745.mrna |
| Orig protein id | gnl|cribi|Naga_100139g10.4745 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:437671..439848 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7097 ID=rna7097|Name=rna7097|organism=Nannochloropsis gaditana|type=mRNA|length=606bp
ATGCGGACGTGTGTCAAATGCCCTATTCTCATCAAAGGCTCTAGCTACTT
TACAACTTTACTGGAAGACCATCCTTCTTGTTTTTGTGTCGTCTCAGGTC
TGGTAAACCCGTCCGACCCCTCGACCCGAGTATTTGGGTGTCGAGAGGGC
TTGGAACAGCATACAAATAGAAGGAGAAGGCACAAAGTCAATGAAATATT
TTACCATGCCACAAGGGAGCTAGCATTCTTGAGATATGCACAAAGCCTAA
CTGGAAACCTATGCCCTAATGCCCGAGCGAGACAGAACATATGGGGCCCG
AGTATCCGTGACAGTTTCCATCAGCCCACAAAAAAAACGGCTATCGAACC
CCTTCAATGCCACGCTCCCACGCATGTCCTCCTCTCATCAAGATGGAATA
GTAGGTCTTGTAAAACATGCTGTAAAACATGCGATAAACAGTGGCTGCTG
CACAAGAAAATAGGAGGGAACAATTTGTGGCCAACCGGGAAAGAAGAGTT
CGGTGGAAATAAAAAATTATTGACTACGTGCGAGAACGACATGTCTGTGG
ATATAAATGTGGACATGAAAAGAAGCATTCGCTCTGACGCCAAGAGGCGG
ACTTGA back to topprotein sequence of rna7097 >rna7097-protein ID=rna7097-protein|Name=rna7097|organism=Nannochloropsis gaditana|type=polypeptide|length=447bp
MEESQATSSDAIAIDDAANAREMGKEEQDKRNTQEVQKSSERHDRHVEMK
DTSNDQKGVLTRAFDDRYQSTKVEMEERRGENGDDCVVKDGPVPSPAPCC
ELAAENATPSSPCDVNDGDAYEKDIEEEREQQEEEEEEEENEGEVREDPL
MRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQW
KTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVE
AGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGE
ESHKASGRRRTLKSEDVAAAMRRQGKFAFLRPDFPMGGKSNTGKEGGSGM
SKRGEGGNLEGKAGKMNAIAKLAAADKRRQEEREKEILQEVEGKDDTEAE
SSQKRGRKAKNTRLLPATVVGQQKIANFLGHKHVLTDESSSTWRETN back to topmRNA from alignment at CM002470.1:437671..439848- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7097 ID=rna7097|Name=rna7097|organism=Nannochloropsis gaditana|type=mRNA|length=2178bp|location=Sequence derived from alignment at CM002470.1:437671..439848- (Nannochloropsis gaditana)
GCAGCAGTACCATCCATGCAAGGAAAAAGAACATGTGCCACGATTTCATC
TATTCATTTTATCAGTGAGGGAAGCTGTTGAATGTGACACGGCATCCGCA
GCCACGTATCCCCTCTCCACACTTTTCGCCAACAAATTGGTCATACCATA
CAAGCAATACAACTGAGGGTCTCATTCCGAGCGTCTTTTCACTGCCATAG
GCTAGCCTGCTAGACATGGAAGAAAGTCAAGCGACTTCATCTGATGCTAT
TGCAATTGACGATGCAGCGAATGCGCGAGAGATGGGCAAAGAGGAGCAGG
ACAAGCGGAATACTCAAGAAGTGCAAAAGTCTTCTGAGCGTCATGATAGG
CATGTAGAAATGAAAGATACCAGCAACGATCAGAAAGGTGCGCGTATGGA
AGTGTGCTTTTGTCTCATGATGAAGAGCCTTTCGTCCGTGAGCGATTGAC
TAGACTTCGGGAGACTAATTTCCCTGCTTTTGGGATTTTCACGTCATCGT
TACGAATTCCTCCACCACACTTCGGCCGTTATACCGGATCAGGCGTGCTA
ACGCGAGCCTTTGACGACAGATATCAATCCACGAAGGTCGAAATGGAAGA
GAGGAGAGGAGAAAACGGCGACGATTGTGTGGTGAAGGATGGACCAGTGC
CCTCCCCCGCTCCATGCTGCGAGCTGGCAGCAGAGAATGCGACCCCTTCC
TCACCGTGTGATGTAAACGATGGAGATGCGTACGAGAAAGACATCGAGGA
GGAAAGAGAACAGCAAGAGGAAGAAGAAGAAGAAGAGGAGAATGAGGGAG
AGGTAAGGGAGGATCCCCTAATGCGGGCAGACCGCATTTTATCAGCCGCA
AAGCCCGTGCCAGCCAAGTCGGCGTGGATGCTTTTCACGGCTGAGGCGAG
AGAGCTTTTAAAAGAGGTAAGACTGGCGAGAGAAAGGAGATGCACCAAAT
CAAGCAGTCGCATTTAATTTCGATGAGTTCACTCCGACGACACATCCATC
CGTCATCCAGGAGCAACCTTCTTTGAGGGTGACGGAGCAGGTCAAAATCA
TGTCTGAACAGTGGAAGACCTTGGACGATGAGGCCCGTCGTCCTTTTTTA
GAACGCGCGGCTGCCGATAAAGAGCGTTATCAAGAGGAAAAATTGCGGTG
GGAAGGAAATCAGGTCGCGAAGGCCGTGCCAAAGGGTGGGAAGGAATCAA
GGAGGGATGTGGAAGCAGGGAGAGGGCTCGCCGACGAAATGCTGTTTCCA
CTGGCGAGAATTCGCAAAATCATGAAATTGGACCCTGAGGTGAAGACAGT
ATCCAAGGAGGCAGCCTTGCTTGTGGGAAAGGCCACGGTGAGGAGGCAGG
ACGAGCCCAAAAAGCACAGAAATGTGGGGGAGATACTTTGGCCGAGCCAG
GGAAGGGATGGCGATAGGTAGCCTTGCAGTGCGCTTGCGATCAGACTTTG
AAAGACAATCAGAGGATGTTATTTGACCCGTCCCCTCACCCACTCCTGTT
TTTTTTCTTAGGAACTCTTTCTTGATATGATCGGAGAAGAGTCTCATAAA
GCCTCAGGGCGCCGAAGAACTCTGAAAAGCGAAGATGTGGCTGCCGCCAT
GCGACGGCAAGGAAAATTTGCTTTCTTACGACCAGATTTTCCTATGGGAG
GAAAAAGCAACACAGGAAAGGAAGGAGGATCGGGAATGAGCAAACGAGGG
GAAGGAGGGAATTTAGAAGGTAAGGCAGGAAAGATGAATGCTATTGCCAA
GCTGGCCGCGGCGGACAAGCGGAGGCAGGAGGAAAGGGAGAAGGAGATAT
TGCAGGAGGTAGAAGGAAAAGACGATACAGAGGCAGAATCAAGCCAAAAA
CGAGGACGCAAGGCCAAGAACACACGATTGCTGCCGGCTACTGTTGTTGG
ACAACAGAAAATCGCGAACTTTCTCGGCCACAAACACGTGCTGACCGATG
AATCGAGTAGCACTTGGCGGGAAACTAATTAGAGATGTGCACACACCAAT
ATCCTTAGGACGCTTTGTATCACGCAAGGAAAGATGGAGCTCTTTGAAAT
AAACGTTATCAAGCGGACTCATGAAGATAGGGAGTGGAGATAGTTTTTGT
TAAAAGACTTTGGTGAACGCCAAGGAAGACAATCAAGTCCGCCTCTTGGC
GTCAGAGCGAATGCTTCTTTTCATGTCC back to topCoding sequence (CDS) from alignment at CM002470.1:437671..439848- >rna7097 ID=rna7097|Name=rna7097|organism=Nannochloropsis gaditana|type=CDS|length=5376bp|location=Sequence derived from alignment at CM002470.1:437671..439848- (Nannochloropsis gaditana)
GAACTCTTTCTTGATATGATCGGAGAAGAGTCTCATAAAGCCTCAGGGCG
CCGAAGAACTCTGAAAAGCGAAGATGTGGCTGCCGCCATGCGACGGCAAG
GAAAATTTGCTTTCTTACGACCAGATTTTCCTATGGGAGGAAAAAGCAAC
ACAGGAAAGGAAGGAGGATCGGGAATGAGCAAACGAGGGGAAGGAGGGAA
TTTAGAAGGTAAGGCAGGAAAGATGAATGCTATTGCCAAGCTGGCCGCGG
CGGACAAGCGGAGGCAGGAGGAAAGGGAGAAGGAGATATTGCAGGAGGTA
GAAGGAAAAGACGATACAGAGGCAGAATCAAGCCAAAAACGAGGACGCAA
GGCCAAGAACACACGATTGCTGCCGGCTACTGTTGTTGGACAACAGAAAA
TCGCGAACTTTCTCGGCCACAAACACGTGCTGACCGATGAATCGAGTAGC
ACTTGGCGGGAAACTAATTAGGAGCAACCTTCTTTGAGGGTGACGGAGCA
GGTCAAAATCATGTCTGAACAGTGGAAGACCTTGGACGATGAGGCCCGTC
GTCCTTTTTTAGAACGCGCGGCTGCCGATAAAGAGCGTTATCAAGAGGAA
AAATTGCGGTGGGAAGGAAATCAGGTCGCGAAGGCCGTGCCAAAGGGTGG
GAAGGAATCAAGGAGGGATGTGGAAGCAGGGAGAGGGCTCGCCGACGAAA
TGCTGTTTCCACTGGCGAGAATTCGCAAAATCATGAAATTGGACCCTGAG
GTGAAGACAGTATCCAAGGAGGCAGCCTTGCTTGTGGGAAAGGCCACGGC
GTGCTAACGCGAGCCTTTGACGACAGATATCAATCCACGAAGGTCGAAAT
GGAAGAGAGGAGAGGAGAAAACGGCGACGATTGTGTGGTGAAGGATGGAC
CAGTGCCCTCCCCCGCTCCATGCTGCGAGCTGGCAGCAGAGAATGCGACC
CCTTCCTCACCGTGTGATGTAAACGATGGAGATGCGTACGAGAAAGACAT
CGAGGAGGAAAGAGAACAGCAAGAGGAAGAAGAAGAAGAAGAGGAGAATG
AGGGAGAGGTAAGGGAGGATCCCCTAATGCGGGCAGACCGCATTTTATCA
GCCGCAAAGCCCGTGCCAGCCAAGTCGGCGTGGATGCTTTTCACGGCTGA
GGCGAGAGAGCTTTTAAAAGAGATGGAAGAAAGTCAAGCGACTTCATCTG
ATGCTATTGCAATTGACGATGCAGCGAATGCGCGAGAGATGGGCAAAGAG
GAGCAGGACAAGCGGAATACTCAAGAAGTGCAAAAGTCTTCTGAGCGTCA
TGATAGGCATGTAGAAATGAAAGATACCAGCAACGATCAGAAAGGAACTC
TTTCTTGATATGATCGGAGAAGAGTCTCATAAAGCCTCAGGGCGCCGAAG
AACTCTGAAAAGCGAAGATGTGGCTGCCGCCATGCGACGGCAAGGAAAAT
TTGCTTTCTTACGACCAGATTTTCCTATGGGAGGAAAAAGCAACACAGGA
AAGGAAGGAGGATCGGGAATGAGCAAACGAGGGGAAGGAGGGAATTTAGA
AGGTAAGGCAGGAAAGATGAATGCTATTGCCAAGCTGGCCGCGGCGGACA
AGCGGAGGCAGGAGGAAAGGGAGAAGGAGATATTGCAGGAGGTAGAAGGA
AAAGACGATACAGAGGCAGAATCAAGCCAAAAACGAGGACGCAAGGCCAA
GAACACACGATTGCTGCCGGCTACTGTTGTTGGACAACAGAAAATCGCGA
ACTTTCTCGGCCACAAACACGTGCTGACCGATGAATCGAGTAGCACTTGG
CGGGAAACTAATTAGGAGCAACCTTCTTTGAGGGTGACGGAGCAGGTCAA
AATCATGTCTGAACAGTGGAAGACCTTGGACGATGAGGCCCGTCGTCCTT
TTTTAGAACGCGCGGCTGCCGATAAAGAGCGTTATCAAGAGGAAAAATTG
CGGTGGGAAGGAAATCAGGTCGCGAAGGCCGTGCCAAAGGGTGGGAAGGA
ATCAAGGAGGGATGTGGAAGCAGGGAGAGGGCTCGCCGACGAAATGCTGT
TTCCACTGGCGAGAATTCGCAAAATCATGAAATTGGACCCTGAGGTGAAG
ACAGTATCCAAGGAGGCAGCCTTGCTTGTGGGAAAGGCCACGGCGTGCTA
ACGCGAGCCTTTGACGACAGATATCAATCCACGAAGGTCGAAATGGAAGA
GAGGAGAGGAGAAAACGGCGACGATTGTGTGGTGAAGGATGGACCAGTGC
CCTCCCCCGCTCCATGCTGCGAGCTGGCAGCAGAGAATGCGACCCCTTCC
TCACCGTGTGATGTAAACGATGGAGATGCGTACGAGAAAGACATCGAGGA
GGAAAGAGAACAGCAAGAGGAAGAAGAAGAAGAAGAGGAGAATGAGGGAG
AGGTAAGGGAGGATCCCCTAATGCGGGCAGACCGCATTTTATCAGCCGCA
AAGCCCGTGCCAGCCAAGTCGGCGTGGATGCTTTTCACGGCTGAGGCGAG
AGAGCTTTTAAAAGAGATGGAAGAAAGTCAAGCGACTTCATCTGATGCTA
TTGCAATTGACGATGCAGCGAATGCGCGAGAGATGGGCAAAGAGGAGCAG
GACAAGCGGAATACTCAAGAAGTGCAAAAGTCTTCTGAGCGTCATGATAG
GCATGTAGAAATGAAAGATACCAGCAACGATCAGAAAGGAACTCTTTCTT
GATATGATCGGAGAAGAGTCTCATAAAGCCTCAGGGCGCCGAAGAACTCT
GAAAAGCGAAGATGTGGCTGCCGCCATGCGACGGCAAGGAAAATTTGCTT
TCTTACGACCAGATTTTCCTATGGGAGGAAAAAGCAACACAGGAAAGGAA
GGAGGATCGGGAATGAGCAAACGAGGGGAAGGAGGGAATTTAGAAGGTAA
GGCAGGAAAGATGAATGCTATTGCCAAGCTGGCCGCGGCGGACAAGCGGA
GGCAGGAGGAAAGGGAGAAGGAGATATTGCAGGAGGTAGAAGGAAAAGAC
GATACAGAGGCAGAATCAAGCCAAAAACGAGGACGCAAGGCCAAGAACAC
ACGATTGCTGCCGGCTACTGTTGTTGGACAACAGAAAATCGCGAACTTTC
TCGGCCACAAACACGTGCTGACCGATGAATCGAGTAGCACTTGGCGGGAA
ACTAATTAGGAGCAACCTTCTTTGAGGGTGACGGAGCAGGTCAAAATCAT
GTCTGAACAGTGGAAGACCTTGGACGATGAGGCCCGTCGTCCTTTTTTAG
AACGCGCGGCTGCCGATAAAGAGCGTTATCAAGAGGAAAAATTGCGGTGG
GAAGGAAATCAGGTCGCGAAGGCCGTGCCAAAGGGTGGGAAGGAATCAAG
GAGGGATGTGGAAGCAGGGAGAGGGCTCGCCGACGAAATGCTGTTTCCAC
TGGCGAGAATTCGCAAAATCATGAAATTGGACCCTGAGGTGAAGACAGTA
TCCAAGGAGGCAGCCTTGCTTGTGGGAAAGGCCACGGCGTGCTAACGCGA
GCCTTTGACGACAGATATCAATCCACGAAGGTCGAAATGGAAGAGAGGAG
AGGAGAAAACGGCGACGATTGTGTGGTGAAGGATGGACCAGTGCCCTCCC
CCGCTCCATGCTGCGAGCTGGCAGCAGAGAATGCGACCCCTTCCTCACCG
TGTGATGTAAACGATGGAGATGCGTACGAGAAAGACATCGAGGAGGAAAG
AGAACAGCAAGAGGAAGAAGAAGAAGAAGAGGAGAATGAGGGAGAGGTAA
GGGAGGATCCCCTAATGCGGGCAGACCGCATTTTATCAGCCGCAAAGCCC
GTGCCAGCCAAGTCGGCGTGGATGCTTTTCACGGCTGAGGCGAGAGAGCT
TTTAAAAGAGATGGAAGAAAGTCAAGCGACTTCATCTGATGCTATTGCAA
TTGACGATGCAGCGAATGCGCGAGAGATGGGCAAAGAGGAGCAGGACAAG
CGGAATACTCAAGAAGTGCAAAAGTCTTCTGAGCGTCATGATAGGCATGT
AGAAATGAAAGATACCAGCAACGATCAGAAAGGAACTCTTTCTTGATATG
ATCGGAGAAGAGTCTCATAAAGCCTCAGGGCGCCGAAGAACTCTGAAAAG
CGAAGATGTGGCTGCCGCCATGCGACGGCAAGGAAAATTTGCTTTCTTAC
GACCAGATTTTCCTATGGGAGGAAAAAGCAACACAGGAAAGGAAGGAGGA
TCGGGAATGAGCAAACGAGGGGAAGGAGGGAATTTAGAAGGTAAGGCAGG
AAAGATGAATGCTATTGCCAAGCTGGCCGCGGCGGACAAGCGGAGGCAGG
AGGAAAGGGAGAAGGAGATATTGCAGGAGGTAGAAGGAAAAGACGATACA
GAGGCAGAATCAAGCCAAAAACGAGGACGCAAGGCCAAGAACACACGATT
GCTGCCGGCTACTGTTGTTGGACAACAGAAAATCGCGAACTTTCTCGGCC
ACAAACACGTGCTGACCGATGAATCGAGTAGCACTTGGCGGGAAACTAAT
TAGGAGCAACCTTCTTTGAGGGTGACGGAGCAGGTCAAAATCATGTCTGA
ACAGTGGAAGACCTTGGACGATGAGGCCCGTCGTCCTTTTTTAGAACGCG
CGGCTGCCGATAAAGAGCGTTATCAAGAGGAAAAATTGCGGTGGGAAGGA
AATCAGGTCGCGAAGGCCGTGCCAAAGGGTGGGAAGGAATCAAGGAGGGA
TGTGGAAGCAGGGAGAGGGCTCGCCGACGAAATGCTGTTTCCACTGGCGA
GAATTCGCAAAATCATGAAATTGGACCCTGAGGTGAAGACAGTATCCAAG
GAGGCAGCCTTGCTTGTGGGAAAGGCCACGGCGTGCTAACGCGAGCCTTT
GACGACAGATATCAATCCACGAAGGTCGAAATGGAAGAGAGGAGAGGAGA
AAACGGCGACGATTGTGTGGTGAAGGATGGACCAGTGCCCTCCCCCGCTC
CATGCTGCGAGCTGGCAGCAGAGAATGCGACCCCTTCCTCACCGTGTGAT
GTAAACGATGGAGATGCGTACGAGAAAGACATCGAGGAGGAAAGAGAACA
GCAAGAGGAAGAAGAAGAAGAAGAGGAGAATGAGGGAGAGGTAAGGGAGG
ATCCCCTAATGCGGGCAGACCGCATTTTATCAGCCGCAAAGCCCGTGCCA
GCCAAGTCGGCGTGGATGCTTTTCACGGCTGAGGCGAGAGAGCTTTTAAA
AGAGATGGAAGAAAGTCAAGCGACTTCATCTGATGCTATTGCAATTGACG
ATGCAGCGAATGCGCGAGAGATGGGCAAAGAGGAGCAGGACAAGCGGAAT
ACTCAAGAAGTGCAAAAGTCTTCTGAGCGTCATGATAGGCATGTAGAAAT
GAAAGATACCAGCAACGATCAGAAAG back to top
|