EWM23593.1, cds7080 (CDS) Nannochloropsis gaditana

Overview
NameEWM23593.1
Unique Namecds7080
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:439462..439633 -
Alignment locationCM002470.1:438933..439306 -
Alignment locationCM002470.1:438512..438838 -
Alignment locationCM002470.1:437867..438337 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23593.1
Productnuclear y ccaat-box binding factor c subunit nf yc
Orig transcript idgnl|cribi|Naga_100139g10.4745.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:439462..439633 -
CM002470.1supercontigCM002470.1:438933..439306 -
CM002470.1supercontigCM002470.1:438512..438838 -
CM002470.1supercontigCM002470.1:437867..438337 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO:0043565sequence-specific DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain
IPR009071HMG_box_dom
Homology
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|585104734|gb|EWM23593.1| (nuclear y ccaat-box binding factor c subunit nf yc [Nannochloropsis gaditana])

HSP 1 Score: 907.131 bits (2343), Expect = 0.000e+0
Identity = 447/447 (100.00%), Postives = 447/447 (100.00%), Query Frame = 0
Query:    1 MEESQATSSDAIAIDDAANAREMGKEEQDKRNTQEVQKSSERHDRHVEMKDTSNDQKGVLTRAFDDRYQSTKVEMEERRGENGDDCVVKDGPVPSPAPCCELAAENATPSSPCDVNDGDAYEKDIEEEREQQEEEEEEEENEGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRRRTLKSEDVAAAMRRQGKFAFLRPDFPMGGKSNTGKEGGSGMSKRGEGGNLEGKAGKMNAIAKLAAADKRRQEEREKEILQEVEGKDDTEAESSQKRGRKAKNTRLLPATVVGQQKIANFLGHKHVLTDESSSTWRETN 447
            MEESQATSSDAIAIDDAANAREMGKEEQDKRNTQEVQKSSERHDRHVEMKDTSNDQKGVLTRAFDDRYQSTKVEMEERRGENGDDCVVKDGPVPSPAPCCELAAENATPSSPCDVNDGDAYEKDIEEEREQQEEEEEEEENEGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRRRTLKSEDVAAAMRRQGKFAFLRPDFPMGGKSNTGKEGGSGMSKRGEGGNLEGKAGKMNAIAKLAAADKRRQEEREKEILQEVEGKDDTEAESSQKRGRKAKNTRLLPATVVGQQKIANFLGHKHVLTDESSSTWRETN
Sbjct:    1 MEESQATSSDAIAIDDAANAREMGKEEQDKRNTQEVQKSSERHDRHVEMKDTSNDQKGVLTRAFDDRYQSTKVEMEERRGENGDDCVVKDGPVPSPAPCCELAAENATPSSPCDVNDGDAYEKDIEEEREQQEEEEEEEENEGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRRRTLKSEDVAAAMRRQGKFAFLRPDFPMGGKSNTGKEGGSGMSKRGEGGNLEGKAGKMNAIAKLAAADKRRQEEREKEILQEVEGKDDTEAESSQKRGRKAKNTRLLPATVVGQQKIANFLGHKHVLTDESSSTWRETN 447          
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|298712964|emb|CBJ26866.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 120.553 bits (301), Expect = 2.797e-27
Identity = 70/173 (40.46%), Postives = 103/173 (59.54%), Query Frame = 0
Query:  166 KSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKA--SGRRRTLKSEDVAAAMRRQGKFAFLRPDFPM 336
            +SAWMLF  E RE +K + P + VT+Q KIMSE WKTL  + R  +  RA  D++RY+ E       Q  K V K  +    D    +G + E++ P+ RI +I+KLD +V++V+KEA  L+GKA ELF  ++ +ES     S  RR LK +D+   M  Q +F +++ DFP+
Sbjct:  144 QSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAE-------QADKPVVKKEEFYTND---EKGQSTELVCPMGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPL 306          
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|698785069|ref|XP_009825578.1| (hypothetical protein H257_03268 [Aphanomyces astaci] >gi|574120081|gb|ETV85560.1| hypothetical protein H257_03268 [Aphanomyces astaci])

HSP 1 Score: 107.842 bits (268), Expect = 7.066e-23
Identity = 70/223 (31.39%), Postives = 115/223 (51.57%), Query Frame = 0
Query:  119 DAYEKDIEEEREQQEEEEEEEENEGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEK--LRWEGNQVAKA--VPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKAS--GRRRTLKSEDVAAAMRRQGKFAFLRPDFP 335
            D+ ++D ++  E +E++  ++E+   + +D       +   AKP+   SA+  F A  R ++  E P L +    KI+S +W  L  EA+ PF   AAADKERY  +K  L  +G  +  A  VP+  +               +  P AR+++IM  DP+V  +SK++ L V KATELF+  +  + H ++   +R+T+K  DV  A+       +LR DFP
Sbjct:   34 DSADQDEKQVTEAKEDDTADDESHATLEQDV-----SVTKLAKPL---SAYFHFLAANRAIVVAENPGLGIGPVQKILSTKWNELSAEAKEPFTTMAAADKERYLNDKQSLMDQGIDIEAAPRVPRNDESL-------------LTLPSARVKRIMLTDPDVNKLSKDSVLAVTKATELFIHFLATKGHDSATISKRKTVKDSDVLTAIHSHAVLDWLRDDFP 235          
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|695380229|ref|XP_009516749.1| (hypothetical protein PHYSODRAFT_309820 [Phytophthora sojae] >gi|348689660|gb|EGZ29474.1| hypothetical protein PHYSODRAFT_309820 [Phytophthora sojae])

HSP 1 Score: 102.449 bits (254), Expect = 1.391e-21
Identity = 60/172 (34.88%), Postives = 97/172 (56.40%), Query Frame = 0
Query:  166 KSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRR--RTLKSEDVAAAMRRQGKFAFLRPDFP 335
            +S+++LF  E R+ + +E P  R+ +  KI+S QWK L  E +  +++ AA DKERYQ+E L    N    A P     +  D  A        ++PL R+RKI++ DP+V  +SK+A + + KA+ELF   +G +S++ +  R  R +K+ DV   ++      +LR DFP
Sbjct:    8 QSSYLLFCNERRKQVMDENPGARIGDIQKIISAQWKELKPEEKEVYVQLAAKDKERYQQELL---DNPQIDAEPTAEGRAAHDSNA-------CIYPLGRVRKIVQSDPDVGKISKDALIAIAKASELFAQFLGTKSYEQALYRNKRQVKASDVTRTIQTTASLDWLREDFP 169          
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|219121277|ref|XP_002185865.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582714|gb|ACI65335.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 103.99 bits (258), Expect = 3.787e-21
Identity = 63/182 (34.62%), Postives = 98/182 (53.85%), Query Frame = 0
Query:  161 KPVP-AKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRW-EGNQVAKAVPKGGKESRRDV----EAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKAS--GRRRTLKSEDVAAAMRRQGKFAFLRPDF 334
            KPV  A++A+ +F  + R  +++E P   V  Q K +   W  L  +A+  +  +AA ++ER  ++   W +   +A A    G  +   +          AD ++FP+AR+RKI KLD +VK +SKEA LLV KA ELF   +G E+ + +    RRTL  +DVA     + +F FL+PD 
Sbjct:  111 KPVKRARTAYFIFADDHRARVQKEHPGEGVATQAKALGHLWANLPADAKLVYQNQAAQERERVAQQLQAWKDAGGLATATTNTGLGANSSLLESSSPANNNADSLVFPVARVRKICKLDTDVKGLSKEALLLVTKAAELFTSQLGTETTRVAQIQNRRTLLPDDVAQVCAARARFDFLQPDI 292          
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|570315559|gb|ETO63507.1| (hypothetical protein F444_18804 [Phytophthora parasitica P1976] >gi|570969623|gb|ETP32742.1| hypothetical protein F442_18629 [Phytophthora parasitica P10297])

HSP 1 Score: 98.9821 bits (245), Expect = 2.946e-20
Identity = 58/172 (33.72%), Postives = 97/172 (56.40%), Query Frame = 0
Query:  166 KSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRR--RTLKSEDVAAAMRRQGKFAFLRPDFP 335
            +S++++F  E R+ + +E P  R+ +  KI+S QWK L  E +  ++E AA DK RY++E L    N      P    ++ +D  A        ++PL R+RKI++ DP+V  VSK+A + + KA+ELF   +G +S++ +  R  R +K+ DV   ++      +LR DFP
Sbjct:    8 QSSYLIFCNERRKQVMDENPGTRIGDIQKIISAQWKELKPEEKDVYVELAAKDKARYEQELL---DNPQVNEEPTAEDKAAQDSNA-------CIYPLGRVRKIVQSDPDVGKVSKDALIAIAKASELFAQFLGTKSYEQALYRNKRQIKASDVTRTIQTTASLDWLREDFP 169          
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|675209345|ref|XP_008913557.1| (hypothetical protein PPTG_17634 [Phytophthora parasitica INRA-310] >gi|566011843|gb|ETI34754.1| hypothetical protein F443_18818 [Phytophthora parasitica P1569] >gi|567949319|gb|ETK75051.1| hypothetical protein L915_18286 [Phytophthora parasitica] >gi|567977978|gb|ETL28472.1| hypothetical protein L916_18195 [Phytophthora parasitica] >gi|568007488|gb|ETL81727.1| hypothetical protein L917_18010 [Phytophthora parasitica] >gi|568037348|gb|ETM34933.1| hypothetical protein L914_18093 [Phytophthora parasitica] >gi|568086338|gb|ETN01230.1| hypothetical protein PPTG_17634 [Phytophthora parasitica INRA-310] >gi|570939348|gb|ETP04605.1| hypothetical protein F441_18670 [Phytophthora parasitica CJ01A1] >gi|970648327|gb|KUF87899.1| WRKY transcription factor 19 [Phytophthora nicotianae])

HSP 1 Score: 97.8265 bits (242), Expect = 7.410e-20
Identity = 57/172 (33.14%), Postives = 97/172 (56.40%), Query Frame = 0
Query:  166 KSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRR--RTLKSEDVAAAMRRQGKFAFLRPDFP 335
            +S++++F  E R+ + +E P  R+ +  KI+S QWK L  E +  ++E AA DK RY++E L    N      P    ++ +D  A        ++PL R+R+I++ DP+V  VSK+A + + KA+ELF   +G +S++ +  R  R +K+ DV   ++      +LR DFP
Sbjct:    8 QSSYLIFCNERRKQVMDENPGTRIGDIQKIISAQWKELKPEEKDVYVELAAKDKARYEQELL---DNPQVNEEPTAEDKAAQDSNA-------CIYPLGRVRRIVQSDPDVGKVSKDALIAIAKASELFAQFLGTKSYEQALYRNKRQIKASDVTRTIQTTASLDWLREDFP 169          
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|673044539|ref|XP_008876230.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|673044541|ref|XP_008876231.1| hypothetical protein H310_11353 [Aphanomyces invadans] >gi|574468035|gb|ETV95055.1| hypothetical protein H310_11353 [Aphanomyces invadans] >gi|574468036|gb|ETV95056.1| hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 99.7525 bits (247), Expect = 8.975e-20
Identity = 82/252 (32.54%), Postives = 120/252 (47.62%), Query Frame = 0
Query:  111 SPCDVND-GDAYEKDIE-------------EEREQQEEEEEEEEN---------EGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEK--LRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKAS--GRRRTLKSEDVAAAMRRQGKFAFLRPDFP 335
            S  D ND  DA+  D E             EERE  E +E  E++          G + +D    + + LS  KP+   SA+  F AE R  +  E P L +    KI+S +W  LD   + P++ +A  DK+RY +EK  L   G  V     K  K S   V         +  P AR+++IM+ DP+V  VSKEA L + KATE F+  +  + H ++   +R+T+K+ DV  A+       +LR DFP
Sbjct:   33 SDTDHNDMNDAFPSDAELNEQDEASDSFAGEEREAAEHDENAEDDVKSDHDDTAHGSIVQDA---SSKKLS--KPL---SAYFHFLAENRAAVIAENPGLGIGPVQKILSTKWNELDAVEKEPYVAKATEDKQRYMKEKQALVDRGIDVDAPSTKRAKSSDDHV---------LTLPNARVKRIMQTDPDVHKVSKEAVLAITKATEQFIQFLTTKGHDSAVMAKRKTVKNSDVLQAIHSHPTLDWLRDDFP 267          
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|1173956458|gb|OQS03233.1| (hypothetical protein THRCLA_04475 [Thraustotheca clavata])

HSP 1 Score: 97.8265 bits (242), Expect = 1.361e-19
Identity = 63/198 (31.82%), Postives = 105/198 (53.03%), Query Frame = 0
Query:  158 SAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERY--QEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMI---GEESHKASGRRRTLKSEDVAAAMRRQGKFAFLRPDFP-MGGKSNTGKEGGSG 349
            + AKP   +SA+  F A+ R  +K E P+  +    KI+   WK L  E + P++++A  DKERY   +E+L   G  +    P+   E            D +L PLAR+++I++ DP+V  +SK+A +++ KATE F+  +   G++S   S +R+T+K  D+   +   G   +LR DFP +  + +  K G  G
Sbjct:   47 NVAKP---QSAYFHFLADKRPQVKAENPNATIGALQKILGTLWKELSAEDKEPYIQKALLDKERYAKAKERLLERGIDIEPEKPEVASE------------DILLLPLARVKRIIQADPDVGKISKDALIVITKATEQFIQYLAAKGQDSAMIS-KRKTIKDSDLLQVIHGHGSLDWLRDDFPQVSSRPSEAKVGSKG 228          
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|953495985|emb|CEG42881.1| (nuclear y ccaat-box binding factor c subunit nf yc [Plasmopara halstedii])

HSP 1 Score: 94.3597 bits (233), Expect = 1.120e-18
Identity = 57/182 (31.32%), Postives = 102/182 (56.04%), Query Frame = 0
Query:  156 ILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRR--RTLKSEDVAAAMRRQGKFAFLRPDFP 335
            ++S  KP   +S++++F  E R  +  E P +R+ E  KI+S +W  L  E +  ++E A  DK RY++E L  +  QV + +    K ++         ++  ++PL R+RKI++ DP++  VSK+A + + KA+ELF   +G +S++ +  R  R +K+ DV   ++      +LR DFP
Sbjct:    1 MMSVKKP---QSSYLIFCNERRRDVMNENPGVRIGEIQKIISAKWNELTTEEKDVYVELANKDKARYKQEIL--DHPQVDEEINLKEKMAQN--------SNACIYPLGRVRKIVQSDPDIGKVSKDALIAIAKASELFAQFLGTKSYEQALYRNKRQIKASDVTRTIQTTASLDWLREDFP 169          
The following BLAST results are available for this feature:
BLAST of EWM23593.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104734|gb|EWM23593.1|0.000e+0100.00nuclear y ccaat-box binding factor c subunit nf yc... [more]
gi|298712964|emb|CBJ26866.1|2.797e-2740.46conserved unknown protein [Ectocarpus siliculosus][more]
gi|698785069|ref|XP_009825578.1|7.066e-2331.39hypothetical protein H257_03268 [Aphanomyces astac... [more]
gi|695380229|ref|XP_009516749.1|1.391e-2134.88hypothetical protein PHYSODRAFT_309820 [Phytophtho... [more]
gi|219121277|ref|XP_002185865.1|3.787e-2134.62predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|570315559|gb|ETO63507.1|2.946e-2033.72hypothetical protein F444_18804 [Phytophthora para... [more]
gi|675209345|ref|XP_008913557.1|7.410e-2033.14hypothetical protein PPTG_17634 [Phytophthora para... [more]
gi|673044539|ref|XP_008876230.1|8.975e-2032.54hypothetical protein, variant 1 [Aphanomyces invad... [more]
gi|1173956458|gb|OQS03233.1|1.361e-1931.82hypothetical protein THRCLA_04475 [Thraustotheca c... [more]
gi|953495985|emb|CEG42881.1|1.120e-1831.32nuclear y ccaat-box binding factor c subunit nf yc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7097rna7097Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications