EWM23593.1, cds7080 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|585104734|gb|EWM23593.1| (nuclear y ccaat-box binding factor c subunit nf yc [Nannochloropsis gaditana]) HSP 1 Score: 907.131 bits (2343), Expect = 0.000e+0 Identity = 447/447 (100.00%), Postives = 447/447 (100.00%), Query Frame = 0
Query: 1 MEESQATSSDAIAIDDAANAREMGKEEQDKRNTQEVQKSSERHDRHVEMKDTSNDQKGVLTRAFDDRYQSTKVEMEERRGENGDDCVVKDGPVPSPAPCCELAAENATPSSPCDVNDGDAYEKDIEEEREQQEEEEEEEENEGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRRRTLKSEDVAAAMRRQGKFAFLRPDFPMGGKSNTGKEGGSGMSKRGEGGNLEGKAGKMNAIAKLAAADKRRQEEREKEILQEVEGKDDTEAESSQKRGRKAKNTRLLPATVVGQQKIANFLGHKHVLTDESSSTWRETN 447
MEESQATSSDAIAIDDAANAREMGKEEQDKRNTQEVQKSSERHDRHVEMKDTSNDQKGVLTRAFDDRYQSTKVEMEERRGENGDDCVVKDGPVPSPAPCCELAAENATPSSPCDVNDGDAYEKDIEEEREQQEEEEEEEENEGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRRRTLKSEDVAAAMRRQGKFAFLRPDFPMGGKSNTGKEGGSGMSKRGEGGNLEGKAGKMNAIAKLAAADKRRQEEREKEILQEVEGKDDTEAESSQKRGRKAKNTRLLPATVVGQQKIANFLGHKHVLTDESSSTWRETN
Sbjct: 1 MEESQATSSDAIAIDDAANAREMGKEEQDKRNTQEVQKSSERHDRHVEMKDTSNDQKGVLTRAFDDRYQSTKVEMEERRGENGDDCVVKDGPVPSPAPCCELAAENATPSSPCDVNDGDAYEKDIEEEREQQEEEEEEEENEGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRRRTLKSEDVAAAMRRQGKFAFLRPDFPMGGKSNTGKEGGSGMSKRGEGGNLEGKAGKMNAIAKLAAADKRRQEEREKEILQEVEGKDDTEAESSQKRGRKAKNTRLLPATVVGQQKIANFLGHKHVLTDESSSTWRETN 447
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|298712964|emb|CBJ26866.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 120.553 bits (301), Expect = 2.797e-27 Identity = 70/173 (40.46%), Postives = 103/173 (59.54%), Query Frame = 0
Query: 166 KSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKA--SGRRRTLKSEDVAAAMRRQGKFAFLRPDFPM 336
+SAWMLF E RE +K + P + VT+Q KIMSE WKTL + R + RA D++RY+ E Q K V K + D +G + E++ P+ RI +I+KLD +V++V+KEA L+GKA ELF ++ +ES S RR LK +D+ M Q +F +++ DFP+
Sbjct: 144 QSAWMLFIQERREQVKRDNPDIAVTQQQKIMSEIWKTLASDEREAYRTRARDDQKRYKAE-------QADKPVVKKEEFYTND---EKGQSTELVCPMGRIGRIIKLDQDVQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPL 306
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|698785069|ref|XP_009825578.1| (hypothetical protein H257_03268 [Aphanomyces astaci] >gi|574120081|gb|ETV85560.1| hypothetical protein H257_03268 [Aphanomyces astaci]) HSP 1 Score: 107.842 bits (268), Expect = 7.066e-23 Identity = 70/223 (31.39%), Postives = 115/223 (51.57%), Query Frame = 0
Query: 119 DAYEKDIEEEREQQEEEEEEEENEGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEK--LRWEGNQVAKA--VPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKAS--GRRRTLKSEDVAAAMRRQGKFAFLRPDFP 335
D+ ++D ++ E +E++ ++E+ + +D + AKP+ SA+ F A R ++ E P L + KI+S +W L EA+ PF AAADKERY +K L +G + A VP+ + + P AR+++IM DP+V +SK++ L V KATELF+ + + H ++ +R+T+K DV A+ +LR DFP
Sbjct: 34 DSADQDEKQVTEAKEDDTADDESHATLEQDV-----SVTKLAKPL---SAYFHFLAANRAIVVAENPGLGIGPVQKILSTKWNELSAEAKEPFTTMAAADKERYLNDKQSLMDQGIDIEAAPRVPRNDESL-------------LTLPSARVKRIMLTDPDVNKLSKDSVLAVTKATELFIHFLATKGHDSATISKRKTVKDSDVLTAIHSHAVLDWLRDDFP 235
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|695380229|ref|XP_009516749.1| (hypothetical protein PHYSODRAFT_309820 [Phytophthora sojae] >gi|348689660|gb|EGZ29474.1| hypothetical protein PHYSODRAFT_309820 [Phytophthora sojae]) HSP 1 Score: 102.449 bits (254), Expect = 1.391e-21 Identity = 60/172 (34.88%), Postives = 97/172 (56.40%), Query Frame = 0
Query: 166 KSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRR--RTLKSEDVAAAMRRQGKFAFLRPDFP 335
+S+++LF E R+ + +E P R+ + KI+S QWK L E + +++ AA DKERYQ+E L N A P + D A ++PL R+RKI++ DP+V +SK+A + + KA+ELF +G +S++ + R R +K+ DV ++ +LR DFP
Sbjct: 8 QSSYLLFCNERRKQVMDENPGARIGDIQKIISAQWKELKPEEKEVYVQLAAKDKERYQQELL---DNPQIDAEPTAEGRAAHDSNA-------CIYPLGRVRKIVQSDPDVGKISKDALIAIAKASELFAQFLGTKSYEQALYRNKRQVKASDVTRTIQTTASLDWLREDFP 169
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|219121277|ref|XP_002185865.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582714|gb|ACI65335.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 103.99 bits (258), Expect = 3.787e-21 Identity = 63/182 (34.62%), Postives = 98/182 (53.85%), Query Frame = 0
Query: 161 KPVP-AKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRW-EGNQVAKAVPKGGKESRRDV----EAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKAS--GRRRTLKSEDVAAAMRRQGKFAFLRPDF 334
KPV A++A+ +F + R +++E P V Q K + W L +A+ + +AA ++ER ++ W + +A A G + + AD ++FP+AR+RKI KLD +VK +SKEA LLV KA ELF +G E+ + + RRTL +DVA + +F FL+PD
Sbjct: 111 KPVKRARTAYFIFADDHRARVQKEHPGEGVATQAKALGHLWANLPADAKLVYQNQAAQERERVAQQLQAWKDAGGLATATTNTGLGANSSLLESSSPANNNADSLVFPVARVRKICKLDTDVKGLSKEALLLVTKAAELFTSQLGTETTRVAQIQNRRTLLPDDVAQVCAARARFDFLQPDI 292
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|570315559|gb|ETO63507.1| (hypothetical protein F444_18804 [Phytophthora parasitica P1976] >gi|570969623|gb|ETP32742.1| hypothetical protein F442_18629 [Phytophthora parasitica P10297]) HSP 1 Score: 98.9821 bits (245), Expect = 2.946e-20 Identity = 58/172 (33.72%), Postives = 97/172 (56.40%), Query Frame = 0
Query: 166 KSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRR--RTLKSEDVAAAMRRQGKFAFLRPDFP 335
+S++++F E R+ + +E P R+ + KI+S QWK L E + ++E AA DK RY++E L N P ++ +D A ++PL R+RKI++ DP+V VSK+A + + KA+ELF +G +S++ + R R +K+ DV ++ +LR DFP
Sbjct: 8 QSSYLIFCNERRKQVMDENPGTRIGDIQKIISAQWKELKPEEKDVYVELAAKDKARYEQELL---DNPQVNEEPTAEDKAAQDSNA-------CIYPLGRVRKIVQSDPDVGKVSKDALIAIAKASELFAQFLGTKSYEQALYRNKRQIKASDVTRTIQTTASLDWLREDFP 169
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|675209345|ref|XP_008913557.1| (hypothetical protein PPTG_17634 [Phytophthora parasitica INRA-310] >gi|566011843|gb|ETI34754.1| hypothetical protein F443_18818 [Phytophthora parasitica P1569] >gi|567949319|gb|ETK75051.1| hypothetical protein L915_18286 [Phytophthora parasitica] >gi|567977978|gb|ETL28472.1| hypothetical protein L916_18195 [Phytophthora parasitica] >gi|568007488|gb|ETL81727.1| hypothetical protein L917_18010 [Phytophthora parasitica] >gi|568037348|gb|ETM34933.1| hypothetical protein L914_18093 [Phytophthora parasitica] >gi|568086338|gb|ETN01230.1| hypothetical protein PPTG_17634 [Phytophthora parasitica INRA-310] >gi|570939348|gb|ETP04605.1| hypothetical protein F441_18670 [Phytophthora parasitica CJ01A1] >gi|970648327|gb|KUF87899.1| WRKY transcription factor 19 [Phytophthora nicotianae]) HSP 1 Score: 97.8265 bits (242), Expect = 7.410e-20 Identity = 57/172 (33.14%), Postives = 97/172 (56.40%), Query Frame = 0
Query: 166 KSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRR--RTLKSEDVAAAMRRQGKFAFLRPDFP 335
+S++++F E R+ + +E P R+ + KI+S QWK L E + ++E AA DK RY++E L N P ++ +D A ++PL R+R+I++ DP+V VSK+A + + KA+ELF +G +S++ + R R +K+ DV ++ +LR DFP
Sbjct: 8 QSSYLIFCNERRKQVMDENPGTRIGDIQKIISAQWKELKPEEKDVYVELAAKDKARYEQELL---DNPQVNEEPTAEDKAAQDSNA-------CIYPLGRVRRIVQSDPDVGKVSKDALIAIAKASELFAQFLGTKSYEQALYRNKRQIKASDVTRTIQTTASLDWLREDFP 169
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|673044539|ref|XP_008876230.1| (hypothetical protein, variant 1 [Aphanomyces invadans] >gi|673044541|ref|XP_008876231.1| hypothetical protein H310_11353 [Aphanomyces invadans] >gi|574468035|gb|ETV95055.1| hypothetical protein H310_11353 [Aphanomyces invadans] >gi|574468036|gb|ETV95056.1| hypothetical protein, variant 1 [Aphanomyces invadans]) HSP 1 Score: 99.7525 bits (247), Expect = 8.975e-20 Identity = 82/252 (32.54%), Postives = 120/252 (47.62%), Query Frame = 0
Query: 111 SPCDVND-GDAYEKDIE-------------EEREQQEEEEEEEEN---------EGEVREDPLMRADRILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEK--LRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKAS--GRRRTLKSEDVAAAMRRQGKFAFLRPDFP 335
S D ND DA+ D E EERE E +E E++ G + +D + + LS KP+ SA+ F AE R + E P L + KI+S +W LD + P++ +A DK+RY +EK L G V K K S V + P AR+++IM+ DP+V VSKEA L + KATE F+ + + H ++ +R+T+K+ DV A+ +LR DFP
Sbjct: 33 SDTDHNDMNDAFPSDAELNEQDEASDSFAGEEREAAEHDENAEDDVKSDHDDTAHGSIVQDA---SSKKLS--KPL---SAYFHFLAENRAAVIAENPGLGIGPVQKILSTKWNELDAVEKEPYVAKATEDKQRYMKEKQALVDRGIDVDAPSTKRAKSSDDHV---------LTLPNARVKRIMQTDPDVHKVSKEAVLAITKATEQFIQFLTTKGHDSAVMAKRKTVKNSDVLQAIHSHPTLDWLRDDFP 267
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|1173956458|gb|OQS03233.1| (hypothetical protein THRCLA_04475 [Thraustotheca clavata]) HSP 1 Score: 97.8265 bits (242), Expect = 1.361e-19 Identity = 63/198 (31.82%), Postives = 105/198 (53.03%), Query Frame = 0
Query: 158 SAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERY--QEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMI---GEESHKASGRRRTLKSEDVAAAMRRQGKFAFLRPDFP-MGGKSNTGKEGGSG 349
+ AKP +SA+ F A+ R +K E P+ + KI+ WK L E + P++++A DKERY +E+L G + P+ E D +L PLAR+++I++ DP+V +SK+A +++ KATE F+ + G++S S +R+T+K D+ + G +LR DFP + + + K G G
Sbjct: 47 NVAKP---QSAYFHFLADKRPQVKAENPNATIGALQKILGTLWKELSAEDKEPYIQKALLDKERYAKAKERLLERGIDIEPEKPEVASE------------DILLLPLARVKRIIQADPDVGKISKDALIVITKATEQFIQYLAAKGQDSAMIS-KRKTIKDSDLLQVIHGHGSLDWLRDDFPQVSSRPSEAKVGSKG 228
BLAST of EWM23593.1 vs. NCBI_GenBank
Match: gi|953495985|emb|CEG42881.1| (nuclear y ccaat-box binding factor c subunit nf yc [Plasmopara halstedii]) HSP 1 Score: 94.3597 bits (233), Expect = 1.120e-18 Identity = 57/182 (31.32%), Postives = 102/182 (56.04%), Query Frame = 0
Query: 156 ILSAAKPVPAKSAWMLFTAEARELLKEEQPSLRVTEQVKIMSEQWKTLDDEARRPFLERAAADKERYQEEKLRWEGNQVAKAVPKGGKESRRDVEAGRGLADEMLFPLARIRKIMKLDPEVKTVSKEAALLVGKATELFLDMIGEESHKASGRR--RTLKSEDVAAAMRRQGKFAFLRPDFP 335
++S KP +S++++F E R + E P +R+ E KI+S +W L E + ++E A DK RY++E L + QV + + K ++ ++ ++PL R+RKI++ DP++ VSK+A + + KA+ELF +G +S++ + R R +K+ DV ++ +LR DFP
Sbjct: 1 MMSVKKP---QSSYLIFCNERRRDVMNENPGVRIGEIQKIISAKWNELTTEEKDVYVELANKDKARYKQEIL--DHPQVDEEINLKEKMAQN--------SNACIYPLGRVRKIVQSDPDIGKVSKDALIAIAKASELFAQFLGTKSYEQALYRNKRQIKASDVTRTIQTTASLDWLREDFP 169 The following BLAST results are available for this feature:
BLAST of EWM23593.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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