rna7085, rna7085 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7085
Unique Name	rna7085
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1560
Alignment location	CM002470.1:413491..415060 +

Link to JBrowse

Properties


Property Name	Value
Product	Importin-beta
Orig transcript id	gnl\|cribi\|Naga_100915g2.4706.mrna
Orig protein id	gnl\|cribi\|Naga_100915g2.4706
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:413491..415060 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100915g2	gene6852	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7085	rna7085-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23606.1	cds7068	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:413491..415060+
coding sequence from alignment at CM002470.1:413491..415060+

mRNA sequence

>rna7085 ID=rna7085|Name=rna7085|organism=Nannochloropsis gaditana|type=mRNA|length=1560bp
TTGGAAATGGACCATGTTACTCATAATGATATTCCCCCCCTCTTGACGCC
CATGTCCATATTCCTGCCCCTAGCATTGTGTCAAGAGGCCCACAAGCTGT
CTTCTTCGCACGCACATTCCTTAACGCACCACTGGTGACATGGAAGGACA
AGGAGGGGGGGATGCTGGAGGGGCAGGAGGCGCGGTGGGAGGAGGAGGAG
ACGGCGAGGGAGGAGGAGGAGGTGAGGAAGGGACCTCGGCCTCATCTTCG
CCTCCCCAAGGAGCAGAACAGGGCAACCCGCATCCTGCCTTATCTACACA
AGCGGGCGCCGAGATGCTGTTCCCAGGGAAAGAAGGGCGGGACTACGAGG
TGGCCTCACCGGAGGAGCAGATGGTGGTCGACGGCTTGGTCTCGCTCTCG
GCCGCCGACACGAGCGAGAAGGAAGTGGACCGGTTGCTGGGCCTGCACTC
TTCCCCCTCGTCCCCGATAGTGCCCACCCCCGTCACCCCGCGGACCATGC
CGCCGCCCTTGGCGCCTGCGCTCTTGCCCTTCCAATCGACGGCAGCGGCC
GAAGCAGCAGCGGCGGCGGTGGCCACTCCCGTGACACCCTTTCCCTCCCC
CCTGCCTCGAGACGAGGGGAGGTCAGGGACGTCGCCGGTCCACGGCTTTT
CCTTCATTCCTCGGAGGGAGGAGGAAGCGGGCAGGAGGACTGGGAGTGCG
GGTGAGGATTCAGCAGGGAGGTTGCCGACCACCCCCCTCTGGCGGCTGGT
CGGGCCCCCGGCTACGCCGCAGGCACCAGGCGGGCCGGTCAGCCTTTCGT
ACCCAGCGCTCCAGGTGCTTCGGCGCCGGTTTCAGGAGGTAACTGCGAAG
ACGAATGTGCAGGATGGTCTGATTTTGGAGCAGGCGGAGCAGTTGACGGC
CCTGGAGGAAGTGTTGGCGCGGGAGCGGAAGATACGGGGCTTAAGGAAGG
TGTACCACCTGATGGGGAGGGAGGGGGAAGGGAGGAGAAGAAGGAAGCTG
ACTCGGGGGGGGAACAGAAATCGACAGGGCGGGGGAGGGGAGGAAAGGGG
AGAGGGGGAGGAAGGGGAGGAGGAGGAGGAGGACGAAAAAGAAGCGATGC
GGGAGGAGATCGATCGATTGGAAGGAATGGTGCGAGATCTGACGGCGTAC
AATGAGGCCACCGAGGGGCAGTTGAGGGCTGTGCACCAGCTTCTTCTTAC
CTACGTGCTCCGTCACCCGCAGCCGCCGCACGTGCGGGGGGAAGGCGGGG
GGGGGGGGGCACCCTGTCCACGCGCTGGTTTGGCCTGGCCTCTCGGAACG
AGGTGCGGGAGGCGCTGCGGGAAGAAGGCCACGGCTTGCTCCGGAAAGAC
ACGCTGAACGAGGCGTGCCGGGCGGTGGAGATGGCCTTGGAGGACGAGCG
GATCGATCCCTTGGAACGGGACCCGGACACGGGGGAGGTCGTGGCCGTGA
ACCGGAAGTTAAGGAGACTGCAAGAGATTGGGCTGGAGTACGGAAAGGGG
GTGGTGGAGTTGATCGTCGCGAAGAAGCGAGAGATGGCACGCTTTGGGAG
GGGCCGTGGA

protein sequence of rna7085

>rna7085-protein ID=rna7085-protein|Name=rna7085|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MAGQTVPPPARMDPAVMLTQTQKALSIFYSGQGHSREEFKEAEAWLESFQ
HYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFK
QQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAV
AVQVGSEYCTSSRPPRPSRPSGGDWKEVAVTHAKHAESSARANPPSTLLG
LARAFTQTRGRGRAVGVTYLCGMGSNICGP

mRNA from alignment at CM002470.1:413491..415060+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7085 ID=rna7085|Name=rna7085|organism=Nannochloropsis gaditana|type=mRNA|length=1570bp|location=Sequence derived from alignment at CM002470.1:413491..415060+ (Nannochloropsis gaditana)
ATGGCCGGCCAAAcagtgcctccgcctgcgcGGATGGACCCAGCTGTGAT
GTTGACACAGGTACAGTTtgggaaaggcggagggtAGGAGGCGGAATGGA
GTCGATTtttacctccccctctcgcgACATTGCCTGACAGACACAGAAGG
CTTTGAGCATTTTTTACAGCGGACAAGGACACAGTCGGGAAGAATTTAAG
GAAGCTGAGGCGTAAGTACTCTCTTGCTGGTACACACTGCTCCCTTTTAC
AGTCTTTTCTCACGCTCTCtactccccccttcctctccctcctcccagat
gGTTAGAGTCGTTTCAGCACTATCCACAAGCGTGGGCAGTCGCCGATGCC
CTCATAAGCGATCAGAACTCAAGCCCACCTGTGTTGTTTTTCGCGGCAAA
AACTTTGCAGACTAAAGTGTATTTGGATTGGGAGGAACTGGAGCCGGGCA
TGTGAGTggaacggaggaagagagcaagggttgaagggtgaggaggaaga
gaagggggccaCTACACCACAGTTGGTGGTAGAGGGTAGATTGTaagaag
gaaaggctggGTGAAGGGGTTGAGGTAGGCAGGGAGAGGTTTGTAGCGCG
GATGGATTTAGAAAGCAAATTCTTGcctagggaggaaggtgccatggaga
gagggagacgtgcaTGGGATCGGTGtcaggagggatggagacggcaaaga
ggagaaggagaggcgggggaaggtagTAAGGGATGTGGGACGTGCACGTG
AGGACGGcacgggaggggcggggtccggcagggaaggaaagggagggcgg
ctgAATCGAAGGCGCGAGGGGCCACACGTCCCCGGGCATGGGCTCTAtcc
agggggaaaggggggagggaggggaggaggaaggtcaaATGCAGAAGGCA
GACGGAGGGCCGAGGCACCAGCCGATCCCGTAatccccaccctctcccat
cATTTTTTGCCCGTGGGAACGGACATTCTGACACCTCCAGGATCGAGCCC
TTCAAGCAGCAGCTGGTGCGGCATTTGGCGACTTGGAGCGTCcgccggcg
ggagggaggggagggcggaggaggtgggggaggaagaaggggcggcagca
gcggagGGGACCTGGGTGCCTTTTTGAACAGGCTCTgcgtggtgctggcg
gccgtggcagtgcaggtagggagggagggcagggacgagggagggaagga
ggatacATAGCacgggaggatggaggcggtcGTCGTGGGTGTGCGTGAGG
CGCAGTGAGTTGGGAGGTCGGGAGCGAATACTGCACATCAAGCCGGCCGC
CTAGACCGTCTCGTCCCTCGGGAGGAGATTggaaggaagtggcggtGACA
CACGCCAAACATGCTGAGTCAAGTGCTAGAGCAAACCCACCCTCGACCCT
TCTTGGACTGGCACGGGCGTTTACTCAAACCCGGGGCCGTGGAAGGGCAG
TTGGGGTGACATATCTGTGCGGGATGGGAAGCAATATCTGTGGACCGTAG
GGGGATGTCGTCGAACGATTTCGAGGACCTGTGTCTGAAACGCCAGGTGG
AAAGTGTGGGGTGGACAGGA

Coding sequence (CDS) from alignment at CM002470.1:413491..415060+

>rna7085 ID=rna7085|Name=rna7085|organism=Nannochloropsis gaditana|type=CDS|length=3465bp|location=Sequence derived from alignment at CM002470.1:413491..415060+ (Nannochloropsis gaditana)
ATGGCCGGCCAAAcagtgcctccgcctgcgcGGATGGACCCAGCTGTGAT
GTTGACACAGACACAGAAGGCTTTGAGCATTTTTTACAGCGGACAAGGAC
ACAGTCGGGAAGAATTTAAGGAAGCTGAGGCatgGTTAGAGTCGTTTCAG
CACTATCCACAAGCGTGGGCAGTCGCCGATGCCCTCATAAGCGATCAGAA
CTCAAGCCCACCTGTGTTGTTTTTCGCGGCAAAAACTTTGCAGACTAAAG
TGTATTTGGATTGGGAGGAACTGGAGCCGGGCATGATCGAGCCCTTCAAG
CAGCAGCTGGTGCGGCATTTGGCGACTTGGAGCGTCcgccggcgggaggg
aggggagggcggaggaggtgggggaggaagaaggggcggcagcagcggag
GGGACCTGGGTGCCTTTTTGAACAGGCTCTgcgtggtgctggcggccgtg
gcagtgcagGTCGGGAGCGAATACTGCACATCAAGCCGGCCGCCTAGACC
GTCTCGTCCCTCGGGAGGAGATTggaaggaagtggcggtGACACACGCCA
AACATGCTGAGTCAAGTGCTAGAGCAAACCCACCCTCGACCCTTCTTGGA
CTGGCACGGGCGTTTACTCAAACCCGGGGCCGTGGAAGGGCAGTTGGGGT
GACATATCTGTGCGGGATGGGAAGCAATATCTGTGGACCGTAGATGGCCG
GCCAAAcagtgcctccgcctgcgcGGATGGACCCAGCTGTGATGTTGACA
CAGACACAGAAGGCTTTGAGCATTTTTTACAGCGGACAAGGACACAGTCG
GGAAGAATTTAAGGAAGCTGAGGCatgGTTAGAGTCGTTTCAGCACTATC
CACAAGCGTGGGCAGTCGCCGATGCCCTCATAAGCGATCAGAACTCAAGC
CCACCTGTGTTGTTTTTCGCGGCAAAAACTTTGCAGACTAAAGTGTATTT
GGATTGGGAGGAACTGGAGCCGGGCATGATCGAGCCCTTCAAGCAGCAGC
TGGTGCGGCATTTGGCGACTTGGAGCGTCcgccggcgggagggaggggag
ggcggaggaggtgggggaggaagaaggggcggcagcagcggagGGGACCT
GGGTGCCTTTTTGAACAGGCTCTgcgtggtgctggcggccgtggcagtgc
agGTCGGGAGCGAATACTGCACATCAAGCCGGCCGCCTAGACCGTCTCGT
CCCTCGGGAGGAGATTggaaggaagtggcggtGACACACGCCAAACATGC
TGAGTCAAGTGCTAGAGCAAACCCACCCTCGACCCTTCTTGGACTGGCAC
GGGCGTTTACTCAAACCCGGGGCCGTGGAAGGGCAGTTGGGGTGACATAT
CTGTGCGGGATGGGAAGCAATATCTGTGGACCGTAGATGGCCGGCCAAAc
agtgcctccgcctgcgcGGATGGACCCAGCTGTGATGTTGACACAGACAC
AGAAGGCTTTGAGCATTTTTTACAGCGGACAAGGACACAGTCGGGAAGAA
TTTAAGGAAGCTGAGGCatgGTTAGAGTCGTTTCAGCACTATCCACAAGC
GTGGGCAGTCGCCGATGCCCTCATAAGCGATCAGAACTCAAGCCCACCTG
TGTTGTTTTTCGCGGCAAAAACTTTGCAGACTAAAGTGTATTTGGATTGG
GAGGAACTGGAGCCGGGCATGATCGAGCCCTTCAAGCAGCAGCTGGTGCG
GCATTTGGCGACTTGGAGCGTCcgccggcgggagggaggggagggcggag
gaggtgggggaggaagaaggggcggcagcagcggagGGGACCTGGGTGCC
TTTTTGAACAGGCTCTgcgtggtgctggcggccgtggcagtgcagGTCGG
GAGCGAATACTGCACATCAAGCCGGCCGCCTAGACCGTCTCGTCCCTCGG
GAGGAGATTggaaggaagtggcggtGACACACGCCAAACATGCTGAGTCA
AGTGCTAGAGCAAACCCACCCTCGACCCTTCTTGGACTGGCACGGGCGTT
TACTCAAACCCGGGGCCGTGGAAGGGCAGTTGGGGTGACATATCTGTGCG
GGATGGGAAGCAATATCTGTGGACCGTAGATGGCCGGCCAAAcagtgcct
ccgcctgcgcGGATGGACCCAGCTGTGATGTTGACACAGACACAGAAGGC
TTTGAGCATTTTTTACAGCGGACAAGGACACAGTCGGGAAGAATTTAAGG
AAGCTGAGGCatgGTTAGAGTCGTTTCAGCACTATCCACAAGCGTGGGCA
GTCGCCGATGCCCTCATAAGCGATCAGAACTCAAGCCCACCTGTGTTGTT
TTTCGCGGCAAAAACTTTGCAGACTAAAGTGTATTTGGATTGGGAGGAAC
TGGAGCCGGGCATGATCGAGCCCTTCAAGCAGCAGCTGGTGCGGCATTTG
GCGACTTGGAGCGTCcgccggcgggagggaggggagggcggaggaggtgg
gggaggaagaaggggcggcagcagcggagGGGACCTGGGTGCCTTTTTGA
ACAGGCTCTgcgtggtgctggcggccgtggcagtgcagGTCGGGAGCGAA
TACTGCACATCAAGCCGGCCGCCTAGACCGTCTCGTCCCTCGGGAGGAGA
TTggaaggaagtggcggtGACACACGCCAAACATGCTGAGTCAAGTGCTA
GAGCAAACCCACCCTCGACCCTTCTTGGACTGGCACGGGCGTTTACTCAA
ACCCGGGGCCGTGGAAGGGCAGTTGGGGTGACATATCTGTGCGGGATGGG
AAGCAATATCTGTGGACCGTAGATGGCCGGCCAAAcagtgcctccgcctg
cgcGGATGGACCCAGCTGTGATGTTGACACAGACACAGAAGGCTTTGAGC
ATTTTTTACAGCGGACAAGGACACAGTCGGGAAGAATTTAAGGAAGCTGA
GGCatgGTTAGAGTCGTTTCAGCACTATCCACAAGCGTGGGCAGTCGCCG
ATGCCCTCATAAGCGATCAGAACTCAAGCCCACCTGTGTTGTTTTTCGCG
GCAAAAACTTTGCAGACTAAAGTGTATTTGGATTGGGAGGAACTGGAGCC
GGGCATGATCGAGCCCTTCAAGCAGCAGCTGGTGCGGCATTTGGCGACTT
GGAGCGTCcgccggcgggagggaggggagggcggaggaggtgggggagga
agaaggggcggcagcagcggagGGGACCTGGGTGCCTTTTTGAACAGGCT
CTgcgtggtgctggcggccgtggcagtgcagGTCGGGAGCGAATACTGCA
CATCAAGCCGGCCGCCTAGACCGTCTCGTCCCTCGGGAGGAGATTggaag
gaagtggcggtGACACACGCCAAACATGCTGAGTCAAGTGCTAGAGCAAA
CCCACCCTCGACCCTTCTTGGACTGGCACGGGCGTTTACTCAAACCCGGG
GCCGTGGAAGGGCAGTTGGGGTGACATATCTGTGCGGGATGGGAAGCAAT
ATCTGTGGACCGTAG

Synonyms

Publications