EWM23606.1, cds7068 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|585104748|gb|EWM23606.1| (Importin-beta [Nannochloropsis gaditana]) HSP 1 Score: 471.855 bits (1213), Expect = 2.385e-168 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0 Query: 1 MAGQTVPPPARMDPAVMLTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQVGSEYCTSSRPPRPSRPSGGDWKEVAVTHAKHAESSARANPPSTLLGLARAFTQTRGRGRAVGVTYLCGMGSNICGP 230 MAGQTVPPPARMDPAVMLTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQVGSEYCTSSRPPRPSRPSGGDWKEVAVTHAKHAESSARANPPSTLLGLARAFTQTRGRGRAVGVTYLCGMGSNICGP Sbjct: 1 MAGQTVPPPARMDPAVMLTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQVGSEYCTSSRPPRPSRPSGGDWKEVAVTHAKHAESSARANPPSTLLGLARAFTQTRGRGRAVGVTYLCGMGSNICGP 230
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|299116889|emb|CBN74999.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 73.9442 bits (180), Expect = 1.558e-11 Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 0 Query: 13 DPAVM--LTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQVG 155 DPA+ + + AL+ Y+G G S KEA+ WL+ FQ +AW+VADA++ +++ V FFAA+T+ K+ ++ EL I + LV HL W GG G+ A + RLC+ L+ +A+Q+ Sbjct: 5 DPAIQQHVAEALAALNAVYNGSGPSH---KEADRWLQEFQRSQEAWSVADAMLRMESAELNVTFFAAQTIHAKIRSNFRELPQESIPSLRDSLVDHLERW------------GGAGK---------SAVITRLCLALSGLALQLN 125
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|1069943382|ref|XP_018296055.1| (hypothetical protein PHYBLDRAFT_40545 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026593586|gb|OAD78015.1| hypothetical protein PHYBLDRAFT_40545 [Phycomyces blakesleeanus NRRL 1555(-)]) HSP 1 Score: 68.1662 bits (165), Expect = 1.355e-9 Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0 Query: 16 VMLTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHL 107 V ++Q +ALS YS + KEA WLE FQ P+AW VA+ L++ +NS+ FAA+TL+ K+ D EL P + LV+ L Sbjct: 4 VAVSQVLEALSALYSSSNSQAK--KEASRWLEDFQKQPEAWTVANYLLTMENSNTETRLFAAQTLRQKITYDLRELNPEARRSLRDSLVQLL 93
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|1173143877|ref|XP_020519422.1| (transportin MOS14 isoform X2 [Amborella trichopoda]) HSP 1 Score: 67.781 bits (164), Expect = 1.869e-9 Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 0 Query: 40 KEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGD-----LGAFLNRLCVVLAAVAVQVGSEYCTSSRPPR 166 ++AE WL+ FQ AW V+D+L+ D +S L F ++TL+TKV D+EEL P + L +A S+ + E GGGG D + +FL+ L +V Q Y T++RP R Sbjct: 29 RQAERWLQDFQRSIDAWQVSDSLLHDASSDLESLIFCSQTLKTKVQRDFEELPSEAFRPLRDSLCISVAVASLAVQVSSEDWGGGGILNWLRDEIDSHPEYIPSFLD-----LLSVLPQEACSYKTAARPER 155
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|1004136734|gb|KXZ44767.1| (hypothetical protein GPECTOR_62g882 [Gonium pectorale]) HSP 1 Score: 66.6254 bits (161), Expect = 4.132e-9 Identity = 48/140 (34.29%), Postives = 70/140 (50.00%), Query Frame = 0 Query: 19 TQTQKALSIFYSGQGHSREEFK-EAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQVGSE 157 Q AL+ Y H + K EA+ WLE +Q +AW+VAD ++ D NSS +F A+TL+TKV D+EEL P ++ ++ L++ L +S G R +LC+ LAA+AV V SE Sbjct: 4 NQLLAALNALYH---HEDPKVKDEADRWLEQWQQSVEAWSVADGVLHDANSSMEAQYFCAQTLRTKVQRDFEELPPEAVDSLRESLLQLLIRFS----------KGAPPVR------------TQLCLGLAALAVHVPSE 118
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|598008133|ref|XP_007336258.1| (ARM repeat-containing protein [Auricularia subglabra TFB-10046 SS5] >gi|393247869|gb|EJD55376.1| ARM repeat-containing protein [Auricularia subglabra TFB-10046 SS5]) HSP 1 Score: 65.4698 bits (158), Expect = 1.132e-8 Identity = 40/131 (30.53%), Postives = 63/131 (48.09%), Query Frame = 0 Query: 24 ALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQV 154 AL++F G S++ +A AWL+ FQH AW V + L+ ++ P FFAA+T + KV D +L+P ++ P + LV L + G RR + +LC+ L+ A+QV Sbjct: 15 ALAVF--GGAPSKDALDQANAWLQEFQHSADAWTVCNTLLVTPSAPEPARFFAAQTFRAKVTYDLAQLDPALLLPLRDTLVAALQMY------------AAGPRR----------IIVQLCLALSGFALQV 121
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|159483999|ref|XP_001700048.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158281990|gb|EDP07744.1| predicted protein, partial [Chlamydomonas reinhardtii]) HSP 1 Score: 60.8474 bits (146), Expect = 1.861e-8 Identity = 46/137 (33.58%), Postives = 68/137 (49.64%), Query Frame = 0 Query: 19 TQTQKALSIFYSGQGHSREEFK-EAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQV 154 TQ AL Y H + K EA+ WLE +Q +AW+VADA++ D +S +F A+TL+TKV D+EEL P ++ ++ L++ L +S G R +LC+ LAA+AV V Sbjct: 4 TQLLAALQALY---HHDDPKVKDEADRWLEQWQQSVEAWSVADAVLHDPTTSMEAQYFCAQTLRTKVQRDFEELPPEAVDSLRESLLQLLIRFS---------KGAPPVR-------------TQLCLGLAALAVHV 115
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|1183490478|gb|ORZ14168.1| (armadillo-type protein [Absidia repens]) HSP 1 Score: 64.3142 bits (155), Expect = 2.398e-8 Identity = 41/137 (29.93%), Postives = 66/137 (48.18%), Query Frame = 0 Query: 17 MLTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQ 153 +++Q +ALS YS + + K+A WLE FQ P+AW VAD LI+ +N + F+A+TL+ K+ D EL+ + L++ L G+S + + +LC+ LA +AVQ Sbjct: 5 LVSQVLEALSSLYSDTDATTK--KQATKWLEGFQKKPEAWQVADLLINSENPNLETRLFSAQTLRQKITYDLRELDLNARSSLRDSLLQLL----------------------GASASGSKSIMIQLCLALADLAVQ 117
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|648171270|gb|KDR84886.1| (hypothetical protein GALMADRAFT_53692 [Galerina marginata CBS 339.88]) HSP 1 Score: 62.003 bits (149), Expect = 1.341e-7 Identity = 28/87 (32.18%), Postives = 48/87 (55.17%), Query Frame = 0 Query: 24 ALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATW 110 AL +F + + + A +WL+ FQH P+AW+ + L+ ++ P FAA+T +TKV D +++PG I + L+ L T+ Sbjct: 10 ALDVF--SRATDKASIERANSWLQDFQHSPEAWSTCNVLLLSPDAPSPAKVFAAQTFRTKVTYDLNQVDPGNILALRDTLLTALETY 94
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|1080066517|ref|XP_018575465.1| (PREDICTED: importin-13 [Anoplophora glabripennis]) HSP 1 Score: 62.003 bits (149), Expect = 1.469e-7 Identity = 38/132 (28.79%), Postives = 63/132 (47.73%), Query Frame = 0 Query: 22 QKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQ 153 ++A+++FY + H ++ EA WL Q+ PQAW+ L+S Q SS V FFAA TL TK+ W E+ E K++++ + +++ + LNRLC+ L+A + Sbjct: 9 EEAVTLFYRTEAHQQQ--AEAHQWLTEAQNSPQAWSFVWELLSPQRSS-EVQFFAATTLHTKLMKHWNEVPEDHYELLKKRILEAIINYAMGPK----------------------IVLNRLCITLSAYIIH 115 The following BLAST results are available for this feature:
BLAST of EWM23606.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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