EWM23606.1, cds7068 (CDS) Nannochloropsis gaditana

Overview
NameEWM23606.1
Unique Namecds7068
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:413491..413550 +
Alignment locationCM002470.1:413631..413701 +
Alignment locationCM002470.1:413789..413941 +
Alignment locationCM002470.1:414481..414655 +
Alignment locationCM002470.1:414757..414990 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23606.1
ProductImportin-beta
Orig transcript idgnl|cribi|Naga_100915g2.4706.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:413491..413550 +
CM002470.1supercontigCM002470.1:413631..413701 +
CM002470.1supercontigCM002470.1:413789..413941 +
CM002470.1supercontigCM002470.1:414481..414655 +
CM002470.1supercontigCM002470.1:414757..414990 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO:0008536Ran GTPase binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR001494Importin-beta_N
IPR011989ARM-like
Homology
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|585104748|gb|EWM23606.1| (Importin-beta [Nannochloropsis gaditana])

HSP 1 Score: 471.855 bits (1213), Expect = 2.385e-168
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
Query:    1 MAGQTVPPPARMDPAVMLTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQVGSEYCTSSRPPRPSRPSGGDWKEVAVTHAKHAESSARANPPSTLLGLARAFTQTRGRGRAVGVTYLCGMGSNICGP 230
            MAGQTVPPPARMDPAVMLTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQVGSEYCTSSRPPRPSRPSGGDWKEVAVTHAKHAESSARANPPSTLLGLARAFTQTRGRGRAVGVTYLCGMGSNICGP
Sbjct:    1 MAGQTVPPPARMDPAVMLTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQVGSEYCTSSRPPRPSRPSGGDWKEVAVTHAKHAESSARANPPSTLLGLARAFTQTRGRGRAVGVTYLCGMGSNICGP 230          
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|299116889|emb|CBN74999.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.9442 bits (180), Expect = 1.558e-11
Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 0
Query:   13 DPAVM--LTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQVG 155
            DPA+   + +   AL+  Y+G G S    KEA+ WL+ FQ   +AW+VADA++  +++   V FFAA+T+  K+  ++ EL    I   +  LV HL  W            GG G+          A + RLC+ L+ +A+Q+ 
Sbjct:    5 DPAIQQHVAEALAALNAVYNGSGPSH---KEADRWLQEFQRSQEAWSVADAMLRMESAELNVTFFAAQTIHAKIRSNFRELPQESIPSLRDSLVDHLERW------------GGAGK---------SAVITRLCLALSGLALQLN 125          
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|1069943382|ref|XP_018296055.1| (hypothetical protein PHYBLDRAFT_40545 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026593586|gb|OAD78015.1| hypothetical protein PHYBLDRAFT_40545 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 68.1662 bits (165), Expect = 1.355e-9
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0
Query:   16 VMLTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHL 107
            V ++Q  +ALS  YS      +  KEA  WLE FQ  P+AW VA+ L++ +NS+     FAA+TL+ K+  D  EL P      +  LV+ L
Sbjct:    4 VAVSQVLEALSALYSSSNSQAK--KEASRWLEDFQKQPEAWTVANYLLTMENSNTETRLFAAQTLRQKITYDLRELNPEARRSLRDSLVQLL 93          
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|1173143877|ref|XP_020519422.1| (transportin MOS14 isoform X2 [Amborella trichopoda])

HSP 1 Score: 67.781 bits (164), Expect = 1.869e-9
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 0
Query:   40 KEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGD-----LGAFLNRLCVVLAAVAVQVGSEYCTSSRPPR 166
            ++AE WL+ FQ    AW V+D+L+ D +S    L F ++TL+TKV  D+EEL      P +  L   +A  S+  +   E  GGGG         D     + +FL+     L +V  Q    Y T++RP R
Sbjct:   29 RQAERWLQDFQRSIDAWQVSDSLLHDASSDLESLIFCSQTLKTKVQRDFEELPSEAFRPLRDSLCISVAVASLAVQVSSEDWGGGGILNWLRDEIDSHPEYIPSFLD-----LLSVLPQEACSYKTAARPER 155          
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|1004136734|gb|KXZ44767.1| (hypothetical protein GPECTOR_62g882 [Gonium pectorale])

HSP 1 Score: 66.6254 bits (161), Expect = 4.132e-9
Identity = 48/140 (34.29%), Postives = 70/140 (50.00%), Query Frame = 0
Query:   19 TQTQKALSIFYSGQGHSREEFK-EAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQVGSE 157
             Q   AL+  Y    H   + K EA+ WLE +Q   +AW+VAD ++ D NSS    +F A+TL+TKV  D+EEL P  ++  ++ L++ L  +S           G    R             +LC+ LAA+AV V SE
Sbjct:    4 NQLLAALNALYH---HEDPKVKDEADRWLEQWQQSVEAWSVADGVLHDANSSMEAQYFCAQTLRTKVQRDFEELPPEAVDSLRESLLQLLIRFS----------KGAPPVR------------TQLCLGLAALAVHVPSE 118          
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|598008133|ref|XP_007336258.1| (ARM repeat-containing protein [Auricularia subglabra TFB-10046 SS5] >gi|393247869|gb|EJD55376.1| ARM repeat-containing protein [Auricularia subglabra TFB-10046 SS5])

HSP 1 Score: 65.4698 bits (158), Expect = 1.132e-8
Identity = 40/131 (30.53%), Postives = 63/131 (48.09%), Query Frame = 0
Query:   24 ALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQV 154
            AL++F  G   S++   +A AWL+ FQH   AW V + L+   ++  P  FFAA+T + KV  D  +L+P ++ P +  LV  L  +              G RR           + +LC+ L+  A+QV
Sbjct:   15 ALAVF--GGAPSKDALDQANAWLQEFQHSADAWTVCNTLLVTPSAPEPARFFAAQTFRAKVTYDLAQLDPALLLPLRDTLVAALQMY------------AAGPRR----------IIVQLCLALSGFALQV 121          
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|159483999|ref|XP_001700048.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158281990|gb|EDP07744.1| predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 60.8474 bits (146), Expect = 1.861e-8
Identity = 46/137 (33.58%), Postives = 68/137 (49.64%), Query Frame = 0
Query:   19 TQTQKALSIFYSGQGHSREEFK-EAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQV 154
            TQ   AL   Y    H   + K EA+ WLE +Q   +AW+VADA++ D  +S    +F A+TL+TKV  D+EEL P  ++  ++ L++ L  +S          G    R              +LC+ LAA+AV V
Sbjct:    4 TQLLAALQALY---HHDDPKVKDEADRWLEQWQQSVEAWSVADAVLHDPTTSMEAQYFCAQTLRTKVQRDFEELPPEAVDSLRESLLQLLIRFS---------KGAPPVR-------------TQLCLGLAALAVHV 115          
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|1183490478|gb|ORZ14168.1| (armadillo-type protein [Absidia repens])

HSP 1 Score: 64.3142 bits (155), Expect = 2.398e-8
Identity = 41/137 (29.93%), Postives = 66/137 (48.18%), Query Frame = 0
Query:   17 MLTQTQKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQ 153
            +++Q  +ALS  YS    + +  K+A  WLE FQ  P+AW VAD LI+ +N +     F+A+TL+ K+  D  EL+       +  L++ L                      G+S     + + +LC+ LA +AVQ
Sbjct:    5 LVSQVLEALSSLYSDTDATTK--KQATKWLEGFQKKPEAWQVADLLINSENPNLETRLFSAQTLRQKITYDLRELDLNARSSLRDSLLQLL----------------------GASASGSKSIMIQLCLALADLAVQ 117          
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|648171270|gb|KDR84886.1| (hypothetical protein GALMADRAFT_53692 [Galerina marginata CBS 339.88])

HSP 1 Score: 62.003 bits (149), Expect = 1.341e-7
Identity = 28/87 (32.18%), Postives = 48/87 (55.17%), Query Frame = 0
Query:   24 ALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATW 110
            AL +F   +   +   + A +WL+ FQH P+AW+  + L+   ++  P   FAA+T +TKV  D  +++PG I   +  L+  L T+
Sbjct:   10 ALDVF--SRATDKASIERANSWLQDFQHSPEAWSTCNVLLLSPDAPSPAKVFAAQTFRTKVTYDLNQVDPGNILALRDTLLTALETY 94          
BLAST of EWM23606.1 vs. NCBI_GenBank
Match: gi|1080066517|ref|XP_018575465.1| (PREDICTED: importin-13 [Anoplophora glabripennis])

HSP 1 Score: 62.003 bits (149), Expect = 1.469e-7
Identity = 38/132 (28.79%), Postives = 63/132 (47.73%), Query Frame = 0
Query:   22 QKALSIFYSGQGHSREEFKEAEAWLESFQHYPQAWAVADALISDQNSSPPVLFFAAKTLQTKVYLDWEELEPGMIEPFKQQLVRHLATWSVRRREGGEGGGGGGGRRGGSSGGDLGAFLNRLCVVLAAVAVQ 153
            ++A+++FY  + H ++   EA  WL   Q+ PQAW+    L+S Q SS  V FFAA TL TK+   W E+     E  K++++  +  +++  +                        LNRLC+ L+A  + 
Sbjct:    9 EEAVTLFYRTEAHQQQ--AEAHQWLTEAQNSPQAWSFVWELLSPQRSS-EVQFFAATTLHTKLMKHWNEVPEDHYELLKKRILEAIINYAMGPK----------------------IVLNRLCITLSAYIIH 115          
The following BLAST results are available for this feature:
BLAST of EWM23606.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104748|gb|EWM23606.1|2.385e-168100.00Importin-beta [Nannochloropsis gaditana][more]
gi|299116889|emb|CBN74999.1|1.558e-1132.41conserved unknown protein [Ectocarpus siliculosus][more]
gi|1069943382|ref|XP_018296055.1|1.355e-939.13hypothetical protein PHYBLDRAFT_40545 [Phycomyces ... [more]
gi|1173143877|ref|XP_020519422.1|1.869e-933.33transportin MOS14 isoform X2 [Amborella trichopoda... [more]
gi|1004136734|gb|KXZ44767.1|4.132e-934.29hypothetical protein GPECTOR_62g882 [Gonium pector... [more]
gi|598008133|ref|XP_007336258.1|1.132e-830.53ARM repeat-containing protein [Auricularia subglab... [more]
gi|159483999|ref|XP_001700048.1|1.861e-833.58predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|1183490478|gb|ORZ14168.1|2.398e-829.93armadillo-type protein [Absidia repens][more]
gi|648171270|gb|KDR84886.1|1.341e-732.18hypothetical protein GALMADRAFT_53692 [Galerina ma... [more]
gi|1080066517|ref|XP_018575465.1|1.469e-728.79PREDICTED: importin-13 [Anoplophora glabripennis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7085rna7085Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications