rna7082, rna7082 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7082
Unique Name	rna7082
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2195
Alignment location	CM002470.1:401738..404144 -

Link to JBrowse

Properties


Property Name	Value
Product	ring-h2 finger protein atl5f
Orig transcript id	gnl\|cribi\|Naga_100550g1.5014.mrna
Orig protein id	gnl\|cribi\|Naga_100550g1.5014
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:401738..404144 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100550g1	gene6848	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23610.1	cds7065	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7082	rna7082-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:401738..404144-
coding sequence from alignment at CM002470.1:401738..404144-

mRNA sequence

>rna7082 ID=rna7082|Name=rna7082|organism=Nannochloropsis gaditana|type=mRNA|length=2195bp
CGCAGGTGCTTCATCCACTTCGCTTGGGGGAGCCGGAACCTTCTTCCTGT
CTTCGCCGCGGTCGATCCCTTCCTAAATATCCCGGGGGTCACGAAAACCT
ACCGGTGCAGTACTTTCACTAAGTTGCGTGTGAGTTCTTTATGTCGATAT
CATTTACAACCTTCGTCCCTAGCCGTCAACAGCGGGGAGATGCGGCAGTC
GAGGCTGTACAGGTTATGCGAAGCCACCTCCAGTGGGTCTTTGAGAAACG
GAGGACAAGAAAGGCAAGGAAGACTATCACAGCTCGTAGCAATTTCAAAG
ATATCAAAATTGGCGTTCAGAATATTCTTGATGATAAAGTACGTAGTGAA
GGTGAGATATATCACCGAACTACGCGCAAGGGGACTACAAATAATGTGCA
CCATGTGACAAACCTTCCGGCTGTACTTACAAACCCTGGTATCATCACCA
CCACTGCTTCCGTCCATCTCTCTCTCGTCCCTAAACTTCGCTCTTCCATA
AGCCCTTTCATACCATATTGTGAGTCGGAGGACGACAAAGAGGGTGCACC
CGACATTTTTCTTCTGGCTTCTTCGCACCAGGACATGCCGACGAAGACGA
ATGCGATGCCCGTCGCCCTCCCTACACCGTCCAACCGCGTTCTGTCACCA
TTGACAATACCATTGTTGGACACGGCCTCGATTCCCGTGTCGTCGTCTTT
GTTTCCTCCCCGGTGTGTGGCATTGCCTCGCCCCCTGCAGGAGTATCACG
ACGTCATTACGCACTTGGATAGCGCGGCTCGACACGCCCTGATCCTCTAC
GGCGAACTGGTGGCTGTGTCCAGAGACAGGGCACAGAAGAGGGATGGAGA
GGTAGGTCGGGATGTGGAAGACGGAGCCTTGGGGAGGGAGCGCAAAGAGG
AGGAGGAGACAGGGTGGGAAGCCGGAGATGTTCTTGACGCTTCAGAAGGA
GCGTTGCAGACATTGACGGCGATGTACCTGGAGGGTTTCGGACATCTGGC
GTCAGCGGCCATGACAGTGGTTGGGGGACAGGAAGGAGCCGTGGCGCGAG
AGGCAAAGAGACGACTGGCGGCGCCGACGGTGCCGGGCGGCACACTTCTC
TCCTCGCCCCTTCCTCCACCATCTTCTGGGCCATTAACGCTGATGGAAAA
GGCCTCAGGGGTGGATGAGAACGGGACCACCCTGGTTTCCGACCCCCAGG
GGTTGTTTGAGCGCCCACCTGCCTCGCCTGCCTCGTCCCTGCGAAGCGAC
TGCAGTACCCCCACGGGCCTTGATCTCCCACCTCCGACGACTGACGAAGC
ATCTGGTGAACACCTCCCACCTCCGACGACTGAGGAAGCATCTGAAGACG
GGATGCCGACGCGCGGCGGCGAAAGGAAGGGTGGTAAAGTGACCGAGGAG
GATGCATCCGAGGTTCGGGCGTGTGGACCGGGACGACCGGCCCCGGCGGA
CGTCGATGCTTTAGGGATGGCAAGATGGCCAGGGGCAGAGAATGACGTAG
CATTGGTAGCCGGTGTAGAAGATGCGGATTCGGTGGCTGTGATGAGTACG
GGGGCGGCTGAGAAAACGTTGCACCCTCAGGGACTCGACCCTCTACTGCA
GGCAACCTTAGAGCGATACTCCACGCTTCTGATGCGCCTCGTGCAAAACA
AACTGGAGGCACTCACGGCCAGGGAAAGCATCGGGACCCTGGCGGCGGAG
GAGAGGGGTTGTGGGGAGGAGGAGAGGGACACTGTGTCCGAGGTGACCAC
GCTATGAGGAGTATCCCAAGGACAAGGCGAGGAAACTCCGACACGCCGCG
TGCCACATGCAATTTGGTTCTTTGTCGGGGCCGTTTGCCTGTCCGTGATG
GTCGGCATGACGGACCACCCTAAGCGTTTTTCTTTTCCCCTTGCCTTGAA
GTCTTTCATATGTAGGACGGGCGGGATTTTCGACCCCTCGAATCTCCCCC
CAGTCGATGCCCTCGCTTTTCAACACGCCGAGAGGCACCCTACCCCTAAG
CCCACCCCCTCTTTTGGCCGCTGCTGCCATCTCTAATCGTGGTTCTACTG
TCTGTGTGTCAACTACTAGTGCGGGGGGTATTAAACCCCCCCGGCTGCAT
TGAATCTACCGTGACTGTCGCAAATGCATCTGTCTATCGATTGCTTCCTA
TCTACAAGGATTCCTTTGTATCCCGTCGTCTATCGACACCCTCCC

protein sequence of rna7082

>rna7082-protein ID=rna7082-protein|Name=rna7082|organism=Nannochloropsis gaditana|type=polypeptide|length=731bp
MSPRDGPSPTGAILGGTRWALGDGGGVGGDQRRPSLNRGWEGPGRGTVQM
PFAYPEEPDLELAESGRFVPGPGPLSPPSVPPLSGRTLRVPSFQPPPEPL
HAPPSLGASPASRPGTPSHLGPHHSPTSSTSLFFASSPRHPSPSLFLAPG
APPPRRHHHHHTHRQVTGSSQALLASPPGTGRAPSSIHTAHSSLGCTLGR
LSGPYQSERLQERERRASENHRSHGSEGGSRWDEQLVGSQESAARVPRPY
LGTATNHPPHPPSLPSPRPPSVPPPPSATDAWIEAAMRQHRQRLHPRHHS
QTFPFFAPSLSSSLPPFAFASSPRPHHPPRHPSHGPRHAPSGTLAGRHGH
ARAPGGGEEREAGERGRMGTRPGVGRGDMGRAGEREGGTFHYFSAVGDGR
QHGGNGEGGEESRGEGGREGGREGGWSSGEAVAWHRDMMEWFLSTRTEVS
AGEGGEGGAFERRGAGPSPSRPPNFADSDGPRRHWASHPADFLSPPSLPS
SPPPPLSHVLHVHGEGGREGEGEDEEMGGRPTRLSRRHPQLSLFSPSPSS
SVSVPAPRQEGPVPADVPGAGTGRDAGGGLGSWEREGNEEEREDTLWLAS
AFVDLDVDAMGYEELLLLGELIGPAKKAGLSPSQVEDLPAHPFLPRSLFR
HLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGC
VDVWLESHNSCPVCKAVVVVGGREEGKTAEV

mRNA from alignment at CM002470.1:401738..404144-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7082 ID=rna7082|Name=rna7082|organism=Nannochloropsis gaditana|type=mRNA|length=2407bp|location=Sequence derived from alignment at CM002470.1:401738..404144- (Nannochloropsis gaditana)
CTCTCTCGGGTACAGACGCCCCGCGTGCCCCAGGTCGACCGAGCTGCCTC
TCTCCGGCCTTCTCTATCGGCCAAACGACCGATTTTCCCCGGCCCGGGCC
ACAAGCCGAAGTCCCCCCTGTGCCAGTCCCGGGGAACGCCCGTGGCCGCT
CAGGCGTCCGGAGGCTCCCCACCGCCCCTCTACCGAGACCCCGCCTTTGA
CTGTGGCCCATATGAGCCCTCGAGACGGGCCCAGCCCGACCGGCGCCATC
CTGGGAGGCACTCGCTGGGCGTTGGGGGATGGGGGGGGAGTTGGGGGGGA
CCAGAGGCGGCCCTCGCTCAACCGAGGGTGGGAAGGCCCTGGGCGGGGCA
CGGTTCAGATGCCTTTTGCATACCCGGAGGAGCCCGATTTGGAGCTGGCC
GAGAGCGGGCGGTTCGTTCCCGGCCCCGGGCCACTGTCGCCCCCGTCGGT
GCCCCCTCTTTCCGGCCGCACCCTTCGCGTCCCTTCCTTCCAGCCTCCTC
CCGAGCCCCTCCACGCCCCTCCCTCCCTCGGCGCCTCCCCCGCCTCCCGG
CCTGGGACTCCCTCTCACCTCGGTCCACACCACTCCCCAACCTCCTCCAC
CTCCCTGTTCTTCGCATCTTCCCCCCGGCATCCTTCGCCCTCCCTGTTCC
TGGCCCCGGGAGCACCCCCGCCCCGACGCCACCACCATCACCACACCCAC
CGGCAGGTCACGGGCTCCTCCCAAGCCCTACTCGCCTCCCCGCCCGGGAC
AGGGCGGGCCCCATCCTCCATCCACACTGCGCATTCCTCCCTTGGGTGCA
CGTTGGGTCGCCTCAGCGGCCCTTACCAGTCAGAGAGGCTGCAGGAGAGG
GAGAGACGCGCGTCGGAAAATCATCGGTCTCACGGAAGCGAGGGCGGATC
GCGATGGGACGAGCAGCTCGTGGGATCACAGGAGTCGGCGGCTCGAGTTC
CCAGGCCCTACTTGGGTACTGCCACTAATCATCCGCCCCACCCTCCATCC
CTTCCTTCGCCGCGCCCTCCCTCCGTCCCTCCCCCGCCCTCCGCCACGGA
CGCCTGGATCGAGGCGGCCATGCGCCAGCACCGTCAACGTCTCCACCCTC
GCCACCACTCGCAGACCTTCCCCTTCTTCGCCCCCTCCCTCTCCTCCTCC
CTCCCGCCCTTTGCCTTCGCCTCGTCCCCGCGCCCCCACCACCCGCCACG
GCACCCCTCCCACGGCCCCCGTCACGCGCCTTCTGGGACGCTGGCCGGGC
GTCACGGACACGCACGAGCTCCGGGAGGAGGGGAAGAGAGGGAGGCGGGG
GAGCGGGGGCGGATGGGAACGAGGCCTGGCGTCGGGAGGGGAGATATGGG
AAGGGCGGGCGAGAGGGAGGGAGGGACTTTTCATTACTTTTCGGCGGTTG
GTGATGGGCGGCAGCATGGCGGGAATGGAGAAGGTGGGGAGGAGAGTAGG
GGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCTGGTCCTCTGGGGA
GGCAGTGGCGTGGCACAGGGATATGATGGAGTGGTTCTTGTCGACACGAA
CAGAGGTGTCAGCAGGGGAAGGAGGGGAGGGGGGGGCGTTCGAAAGGAGG
GGCGCGGGGCCGTCCCCGTCGCGTCCTCCGAATTTTGCAGACAGTGACGG
ACCCAGGCGTCACTGGGCGTCTCATCCCGCCGACTTTCTCTCCCCTCCTT
CCCTCCCTTCCTCCCCCCCTCCTCCCCTCTCCCACGTCCTGCACGTGCAC
GGCGAGGGAGGGAGGGAGGGGGAGGGGGAGGACGAGGAGATGGGCGGGCG
CCCCACGCGCCTGAGCCGTCGCCATCCTCAGCTCTCCCTCTTCTCTCCCT
CCCCCTCCTCCTCGGTCTCGGTTCCTGCGCCCCGGCAAGAGGGACCCGTT
CCGGCCGACGTGCCGGGGGCAGGGACGGGGAGGGATGCGGGGGGGGGGCT
GGGTAGCTGGGAGCGGGAGGGAAACGAGGAGGAGAGGGAGGACACGCTCT
GGCTGGCGAGCGCCTTCGTGGACCTGGACGTGGACGCCATGGGCTACGAA
GAGCTCTTGCTCCTGGGGGAGCTCATCGGGCCAGCCAAGAAGGCGGGACT
CAGCCCGTCCCAAGTGGAGGATTTGCCCGCGCACCCCTTCCTCCCTCGGT
CCCTCTTCCGGCACCTGATCTCCCCCGGGAAAAGCTGCCGGGGCGGGGAG
GAAGGAGGGGAGCGGGGTCTGATGTGCGTTGTGTGTCTCTGTGAGGTGGA
GGAGGGAGAAACTGTCCGCACATTGCCACGCTGCGGGCATCGATTCCACG
GCCCAGGCTGTGTGGACGTGTGGCTGGAGTCGCACAATTCGTGCCCGGTC
TGCAAGGCGGTGGTGGTGGTGGGTGGGAGGGAGGAGGGGAAGACCGCGGA
GGTGTAG

Coding sequence (CDS) from alignment at CM002470.1:401738..404144-

>rna7082 ID=rna7082|Name=rna7082|organism=Nannochloropsis gaditana|type=CDS|length=2196bp|location=Sequence derived from alignment at CM002470.1:401738..404144- (Nannochloropsis gaditana)
ATGAGCCCTCGAGACGGGCCCAGCCCGACCGGCGCCATCCTGGGAGGCAC
TCGCTGGGCGTTGGGGGATGGGGGGGGAGTTGGGGGGGACCAGAGGCGGC
CCTCGCTCAACCGAGGGTGGGAAGGCCCTGGGCGGGGCACGGTTCAGATG
CCTTTTGCATACCCGGAGGAGCCCGATTTGGAGCTGGCCGAGAGCGGGCG
GTTCGTTCCCGGCCCCGGGCCACTGTCGCCCCCGTCGGTGCCCCCTCTTT
CCGGCCGCACCCTTCGCGTCCCTTCCTTCCAGCCTCCTCCCGAGCCCCTC
CACGCCCCTCCCTCCCTCGGCGCCTCCCCCGCCTCCCGGCCTGGGACTCC
CTCTCACCTCGGTCCACACCACTCCCCAACCTCCTCCACCTCCCTGTTCT
TCGCATCTTCCCCCCGGCATCCTTCGCCCTCCCTGTTCCTGGCCCCGGGA
GCACCCCCGCCCCGACGCCACCACCATCACCACACCCACCGGCAGGTCAC
GGGCTCCTCCCAAGCCCTACTCGCCTCCCCGCCCGGGACAGGGCGGGCCC
CATCCTCCATCCACACTGCGCATTCCTCCCTTGGGTGCACGTTGGGTCGC
CTCAGCGGCCCTTACCAGTCAGAGAGGCTGCAGGAGAGGGAGAGACGCGC
GTCGGAAAATCATCGGTCTCACGGAAGCGAGGGCGGATCGCGATGGGACG
AGCAGCTCGTGGGATCACAGGAGTCGGCGGCTCGAGTTCCCAGGCCCTAC
TTGGGTACTGCCACTAATCATCCGCCCCACCCTCCATCCCTTCCTTCGCC
GCGCCCTCCCTCCGTCCCTCCCCCGCCCTCCGCCACGGACGCCTGGATCG
AGGCGGCCATGCGCCAGCACCGTCAACGTCTCCACCCTCGCCACCACTCG
CAGACCTTCCCCTTCTTCGCCCCCTCCCTCTCCTCCTCCCTCCCGCCCTT
TGCCTTCGCCTCGTCCCCGCGCCCCCACCACCCGCCACGGCACCCCTCCC
ACGGCCCCCGTCACGCGCCTTCTGGGACGCTGGCCGGGCGTCACGGACAC
GCACGAGCTCCGGGAGGAGGGGAAGAGAGGGAGGCGGGGGAGCGGGGGCG
GATGGGAACGAGGCCTGGCGTCGGGAGGGGAGATATGGGAAGGGCGGGCG
AGAGGGAGGGAGGGACTTTTCATTACTTTTCGGCGGTTGGTGATGGGCGG
CAGCATGGCGGGAATGGAGAAGGTGGGGAGGAGAGTAGGGGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGCTGGTCCTCTGGGGAGGCAGTGGCGT
GGCACAGGGATATGATGGAGTGGTTCTTGTCGACACGAACAGAGGTGTCA
GCAGGGGAAGGAGGGGAGGGGGGGGCGTTCGAAAGGAGGGGCGCGGGGCC
GTCCCCGTCGCGTCCTCCGAATTTTGCAGACAGTGACGGACCCAGGCGTC
ACTGGGCGTCTCATCCCGCCGACTTTCTCTCCCCTCCTTCCCTCCCTTCC
TCCCCCCCTCCTCCCCTCTCCCACGTCCTGCACGTGCACGGCGAGGGAGG
GAGGGAGGGGGAGGGGGAGGACGAGGAGATGGGCGGGCGCCCCACGCGCC
TGAGCCGTCGCCATCCTCAGCTCTCCCTCTTCTCTCCCTCCCCCTCCTCC
TCGGTCTCGGTTCCTGCGCCCCGGCAAGAGGGACCCGTTCCGGCCGACGT
GCCGGGGGCAGGGACGGGGAGGGATGCGGGGGGGGGGCTGGGTAGCTGGG
AGCGGGAGGGAAACGAGGAGGAGAGGGAGGACACGCTCTGGCTGGCGAGC
GCCTTCGTGGACCTGGACGTGGACGCCATGGGCTACGAAGAGCTCTTGCT
CCTGGGGGAGCTCATCGGGCCAGCCAAGAAGGCGGGACTCAGCCCGTCCC
AAGTGGAGGATTTGCCCGCGCACCCCTTCCTCCCTCGGTCCCTCTTCCGG
CACCTGATCTCCCCCGGGAAAAGCTGCCGGGGCGGGGAGGAAGGAGGGGA
GCGGGGTCTGATGTGCGTTGTGTGTCTCTGTGAGGTGGAGGAGGGAGAAA
CTGTCCGCACATTGCCACGCTGCGGGCATCGATTCCACGGCCCAGGCTGT
GTGGACGTGTGGCTGGAGTCGCACAATTCGTGCCCGGTCTGCAAGGCGGT
GGTGGTGGTGGGTGGGAGGGAGGAGGGGAAGACCGCGGAGGTGTAG

Synonyms

Publications