EWM23610.1, cds7065 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|585104757|gb|EWM23610.1| (ring-h2 finger protein atl5f [Nannochloropsis gaditana]) HSP 1 Score: 1412.9 bits (3656), Expect = 0.000e+0 Identity = 731/731 (100.00%), Postives = 731/731 (100.00%), Query Frame = 0
Query: 1 MSPRDGPSPTGAILGGTRWALGDGGGVGGDQRRPSLNRGWEGPGRGTVQMPFAYPEEPDLELAESGRFVPGPGPLSPPSVPPLSGRTLRVPSFQPPPEPLHAPPSLGASPASRPGTPSHLGPHHSPTSSTSLFFASSPRHPSPSLFLAPGAPPPRRHHHHHTHRQVTGSSQALLASPPGTGRAPSSIHTAHSSLGCTLGRLSGPYQSERLQERERRASENHRSHGSEGGSRWDEQLVGSQESAARVPRPYLGTATNHPPHPPSLPSPRPPSVPPPPSATDAWIEAAMRQHRQRLHPRHHSQTFPFFAPSLSSSLPPFAFASSPRPHHPPRHPSHGPRHAPSGTLAGRHGHARAPGGGEEREAGERGRMGTRPGVGRGDMGRAGEREGGTFHYFSAVGDGRQHGGNGEGGEESRGEGGREGGREGGWSSGEAVAWHRDMMEWFLSTRTEVSAGEGGEGGAFERRGAGPSPSRPPNFADSDGPRRHWASHPADFLSPPSLPSSPPPPLSHVLHVHGEGGREGEGEDEEMGGRPTRLSRRHPQLSLFSPSPSSSVSVPAPRQEGPVPADVPGAGTGRDAGGGLGSWEREGNEEEREDTLWLASAFVDLDVDAMGYEELLLLGELIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVVVVGGREEGKTAEV 731
MSPRDGPSPTGAILGGTRWALGDGGGVGGDQRRPSLNRGWEGPGRGTVQMPFAYPEEPDLELAESGRFVPGPGPLSPPSVPPLSGRTLRVPSFQPPPEPLHAPPSLGASPASRPGTPSHLGPHHSPTSSTSLFFASSPRHPSPSLFLAPGAPPPRRHHHHHTHRQVTGSSQALLASPPGTGRAPSSIHTAHSSLGCTLGRLSGPYQSERLQERERRASENHRSHGSEGGSRWDEQLVGSQESAARVPRPYLGTATNHPPHPPSLPSPRPPSVPPPPSATDAWIEAAMRQHRQRLHPRHHSQTFPFFAPSLSSSLPPFAFASSPRPHHPPRHPSHGPRHAPSGTLAGRHGHARAPGGGEEREAGERGRMGTRPGVGRGDMGRAGEREGGTFHYFSAVGDGRQHGGNGEGGEESRGEGGREGGREGGWSSGEAVAWHRDMMEWFLSTRTEVSAGEGGEGGAFERRGAGPSPSRPPNFADSDGPRRHWASHPADFLSPPSLPSSPPPPLSHVLHVHGEGGREGEGEDEEMGGRPTRLSRRHPQLSLFSPSPSSSVSVPAPRQEGPVPADVPGAGTGRDAGGGLGSWEREGNEEEREDTLWLASAFVDLDVDAMGYEELLLLGELIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVVVVGGREEGKTAEV
Sbjct: 1 MSPRDGPSPTGAILGGTRWALGDGGGVGGDQRRPSLNRGWEGPGRGTVQMPFAYPEEPDLELAESGRFVPGPGPLSPPSVPPLSGRTLRVPSFQPPPEPLHAPPSLGASPASRPGTPSHLGPHHSPTSSTSLFFASSPRHPSPSLFLAPGAPPPRRHHHHHTHRQVTGSSQALLASPPGTGRAPSSIHTAHSSLGCTLGRLSGPYQSERLQERERRASENHRSHGSEGGSRWDEQLVGSQESAARVPRPYLGTATNHPPHPPSLPSPRPPSVPPPPSATDAWIEAAMRQHRQRLHPRHHSQTFPFFAPSLSSSLPPFAFASSPRPHHPPRHPSHGPRHAPSGTLAGRHGHARAPGGGEEREAGERGRMGTRPGVGRGDMGRAGEREGGTFHYFSAVGDGRQHGGNGEGGEESRGEGGREGGREGGWSSGEAVAWHRDMMEWFLSTRTEVSAGEGGEGGAFERRGAGPSPSRPPNFADSDGPRRHWASHPADFLSPPSLPSSPPPPLSHVLHVHGEGGREGEGEDEEMGGRPTRLSRRHPQLSLFSPSPSSSVSVPAPRQEGPVPADVPGAGTGRDAGGGLGSWEREGNEEEREDTLWLASAFVDLDVDAMGYEELLLLGELIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVVVVGGREEGKTAEV 731
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|976925914|gb|KVI09797.1| (Zinc finger, RING/FYVE/PHD-type [Cynara cardunculus var. scolymus]) HSP 1 Score: 79.7221 bits (195), Expect = 9.481e-14 Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 0
Query: 661 GGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKA 716
G E G+ MC +CLCE EEGE +RTLP C H FH P C+D+WL SH++CPVC+A
Sbjct: 82 SGRERGDDDAMCSICLCEFEEGEELRTLPECSHSFHVP-CIDMWLYSHSTCPVCRA 136
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|848847867|ref|XP_012832839.1| (PREDICTED: RING-H2 finger protein ATL2 [Erythranthe guttata]) HSP 1 Score: 80.4925 bits (197), Expect = 1.098e-13 Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 0
Query: 621 LIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCK 715
+I PA + GL PS ++ +P F P+ E GL C VCLCEV EGE R LP+C H FH C+D+WL SH++CP+C+
Sbjct: 80 VILPAARRGLDPSVLKSIPVVVFDPKEF------------------ENGLECAVCLCEVSEGEKARVLPKCSHGFHAE-CIDMWLHSHSTCPICR 155
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|1003955740|ref|XP_015731598.1| (PREDICTED: RING finger protein 44 isoform X2 [Coturnix japonica]) HSP 1 Score: 83.5741 bits (205), Expect = 2.736e-13 Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 0
Query: 603 VDLDVDAM---GYEELLLLGELIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKA 716
+DLDVD + YE LL L E +G AK GL+ + +E LP++ F P E +CVVC+C+ E + +R LP C H FH CVD WL+++ +CP+C+A
Sbjct: 335 LDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEHLPSYRFNP-----------------ESHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHA-KCVDKWLKANRTCPICRA 432
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|604347764|gb|EYU45919.1| (hypothetical protein MIMGU_mgv1a023632mg [Erythranthe guttata]) HSP 1 Score: 81.2629 bits (199), Expect = 3.108e-13 Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 0
Query: 621 LIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCK 715
+I PA + GL PS ++ +P F P+ E GL C VCLCEV EGE R LP+C H FH C+D+WL SH++CP+C+
Sbjct: 80 VILPAARRGLDPSVLKSIPVVVFDPKEF------------------ENGLECAVCLCEVSEGEKARVLPKCSHGFHAE-CIDMWLHSHSTCPICR 155
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|1191647607|gb|OTF99580.1| (putative zinc finger, RING/FYVE/PHD-type [Helianthus annuus]) HSP 1 Score: 78.5666 bits (192), Expect = 3.792e-13 Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 0
Query: 630 LSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCK 715
L S V +PAH +H PG +GG G+ MC +CLCE EE E +RTLP C H FH P C+D+WL SH++CP+C+
Sbjct: 76 LENSVVLLIPAH--------KHQKGPGLGTKGGS--GDDDAMCSICLCEFEEDEELRTLPECLHSFHVP-CIDMWLCSHSTCPICR 150
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|695044226|ref|XP_009409852.1| (PREDICTED: RING-H2 finger protein ATL2-like [Musa acuminata subsp. malaccensis]) HSP 1 Score: 79.7221 bits (195), Expect = 8.594e-13 Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 0
Query: 625 AKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVVVVGGR 723
A GL+P+ ++ LP F + GGEEG + + C VCL E EEGE +R LPRCGHRFH C+D+W SH +CP+C++ V R
Sbjct: 76 ADHRGLNPTVLKSLPVFVF-------------AAAAGGEEGDDDVVECPVCLNEFEEGEKMRALPRCGHRFH-IECIDMWFHSHATCPLCRSAVEASAR 160
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|1011579957|gb|KYO29941.1| (hypothetical protein Y1Q_0005141 [Alligator mississippiensis]) HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-13 Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 0
Query: 603 VDLDVDAM---GYEELLLLGELIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKA 716
+DLDVD + YE LL L E +G AK GL+ + +E LP++ F P S E+ L CVVC + E + +R LP C H FH CVD WL+++ +CP+C+A
Sbjct: 54 LDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEHLPSYRFNPES----------------HQSEQTL-CVVCFSDFEARQLLRVLP-CNHEFHA-KCVDKWLKANRTCPICRA 151
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|848923661|ref|XP_012858106.1| (PREDICTED: RING-H2 finger protein ATL44-like [Erythranthe guttata]) HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-12 Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 0
Query: 667 ERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVVV 719
E G C +CLCE E+GE VRTLP C H FH P C+D+WL SH++CPVC+ +V
Sbjct: 83 EDGASCAICLCEFEDGEEVRTLPECAHAFHAP-CIDMWLYSHSNCPVCRRALV 134
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|1091679914|ref|XP_009394200.2| (PREDICTED: RING-H2 finger protein ATL40-like [Musa acuminata subsp. malaccensis]) HSP 1 Score: 78.9518 bits (193), Expect = 1.676e-12 Identity = 44/91 (48.35%), Postives = 50/91 (54.95%), Query Frame = 0
Query: 628 AGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVV 718
GL PS + LPA PF RS G EE G C VCL EEGE VR LP C H FH GC+D+WL SH +CPVC+A+V
Sbjct: 131 VGLDPSAIAALPAFPFRRRS-------------GSEEEGSAA-DCAVCLGAAEEGEMVRLLPDCKHLFH-VGCIDMWLASHVTCPVCRAMV 206 The following BLAST results are available for this feature:
BLAST of EWM23610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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