EWM23610.1, cds7065 (CDS) Nannochloropsis gaditana

Overview
NameEWM23610.1
Unique Namecds7065
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:401738..403933 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23610.1
Productring-h2 finger protein atl5f
Orig transcript idgnl|cribi|Naga_100550g1.5014.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:401738..403933 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|585104757|gb|EWM23610.1| (ring-h2 finger protein atl5f [Nannochloropsis gaditana])

HSP 1 Score: 1412.9 bits (3656), Expect = 0.000e+0
Identity = 731/731 (100.00%), Postives = 731/731 (100.00%), Query Frame = 0
Query:    1 MSPRDGPSPTGAILGGTRWALGDGGGVGGDQRRPSLNRGWEGPGRGTVQMPFAYPEEPDLELAESGRFVPGPGPLSPPSVPPLSGRTLRVPSFQPPPEPLHAPPSLGASPASRPGTPSHLGPHHSPTSSTSLFFASSPRHPSPSLFLAPGAPPPRRHHHHHTHRQVTGSSQALLASPPGTGRAPSSIHTAHSSLGCTLGRLSGPYQSERLQERERRASENHRSHGSEGGSRWDEQLVGSQESAARVPRPYLGTATNHPPHPPSLPSPRPPSVPPPPSATDAWIEAAMRQHRQRLHPRHHSQTFPFFAPSLSSSLPPFAFASSPRPHHPPRHPSHGPRHAPSGTLAGRHGHARAPGGGEEREAGERGRMGTRPGVGRGDMGRAGEREGGTFHYFSAVGDGRQHGGNGEGGEESRGEGGREGGREGGWSSGEAVAWHRDMMEWFLSTRTEVSAGEGGEGGAFERRGAGPSPSRPPNFADSDGPRRHWASHPADFLSPPSLPSSPPPPLSHVLHVHGEGGREGEGEDEEMGGRPTRLSRRHPQLSLFSPSPSSSVSVPAPRQEGPVPADVPGAGTGRDAGGGLGSWEREGNEEEREDTLWLASAFVDLDVDAMGYEELLLLGELIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVVVVGGREEGKTAEV 731
            MSPRDGPSPTGAILGGTRWALGDGGGVGGDQRRPSLNRGWEGPGRGTVQMPFAYPEEPDLELAESGRFVPGPGPLSPPSVPPLSGRTLRVPSFQPPPEPLHAPPSLGASPASRPGTPSHLGPHHSPTSSTSLFFASSPRHPSPSLFLAPGAPPPRRHHHHHTHRQVTGSSQALLASPPGTGRAPSSIHTAHSSLGCTLGRLSGPYQSERLQERERRASENHRSHGSEGGSRWDEQLVGSQESAARVPRPYLGTATNHPPHPPSLPSPRPPSVPPPPSATDAWIEAAMRQHRQRLHPRHHSQTFPFFAPSLSSSLPPFAFASSPRPHHPPRHPSHGPRHAPSGTLAGRHGHARAPGGGEEREAGERGRMGTRPGVGRGDMGRAGEREGGTFHYFSAVGDGRQHGGNGEGGEESRGEGGREGGREGGWSSGEAVAWHRDMMEWFLSTRTEVSAGEGGEGGAFERRGAGPSPSRPPNFADSDGPRRHWASHPADFLSPPSLPSSPPPPLSHVLHVHGEGGREGEGEDEEMGGRPTRLSRRHPQLSLFSPSPSSSVSVPAPRQEGPVPADVPGAGTGRDAGGGLGSWEREGNEEEREDTLWLASAFVDLDVDAMGYEELLLLGELIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVVVVGGREEGKTAEV
Sbjct:    1 MSPRDGPSPTGAILGGTRWALGDGGGVGGDQRRPSLNRGWEGPGRGTVQMPFAYPEEPDLELAESGRFVPGPGPLSPPSVPPLSGRTLRVPSFQPPPEPLHAPPSLGASPASRPGTPSHLGPHHSPTSSTSLFFASSPRHPSPSLFLAPGAPPPRRHHHHHTHRQVTGSSQALLASPPGTGRAPSSIHTAHSSLGCTLGRLSGPYQSERLQERERRASENHRSHGSEGGSRWDEQLVGSQESAARVPRPYLGTATNHPPHPPSLPSPRPPSVPPPPSATDAWIEAAMRQHRQRLHPRHHSQTFPFFAPSLSSSLPPFAFASSPRPHHPPRHPSHGPRHAPSGTLAGRHGHARAPGGGEEREAGERGRMGTRPGVGRGDMGRAGEREGGTFHYFSAVGDGRQHGGNGEGGEESRGEGGREGGREGGWSSGEAVAWHRDMMEWFLSTRTEVSAGEGGEGGAFERRGAGPSPSRPPNFADSDGPRRHWASHPADFLSPPSLPSSPPPPLSHVLHVHGEGGREGEGEDEEMGGRPTRLSRRHPQLSLFSPSPSSSVSVPAPRQEGPVPADVPGAGTGRDAGGGLGSWEREGNEEEREDTLWLASAFVDLDVDAMGYEELLLLGELIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVVVVGGREEGKTAEV 731          
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|976925914|gb|KVI09797.1| (Zinc finger, RING/FYVE/PHD-type [Cynara cardunculus var. scolymus])

HSP 1 Score: 79.7221 bits (195), Expect = 9.481e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 0
Query:  661 GGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKA 716
             G E G+   MC +CLCE EEGE +RTLP C H FH P C+D+WL SH++CPVC+A
Sbjct:   82 SGRERGDDDAMCSICLCEFEEGEELRTLPECSHSFHVP-CIDMWLYSHSTCPVCRA 136          
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|848847867|ref|XP_012832839.1| (PREDICTED: RING-H2 finger protein ATL2 [Erythranthe guttata])

HSP 1 Score: 80.4925 bits (197), Expect = 1.098e-13
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 0
Query:  621 LIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCK 715
            +I PA + GL PS ++ +P   F P+                    E GL C VCLCEV EGE  R LP+C H FH   C+D+WL SH++CP+C+
Sbjct:   80 VILPAARRGLDPSVLKSIPVVVFDPKEF------------------ENGLECAVCLCEVSEGEKARVLPKCSHGFHAE-CIDMWLHSHSTCPICR 155          
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|1003955740|ref|XP_015731598.1| (PREDICTED: RING finger protein 44 isoform X2 [Coturnix japonica])

HSP 1 Score: 83.5741 bits (205), Expect = 2.736e-13
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 0
Query:  603 VDLDVDAM---GYEELLLLGELIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKA 716
            +DLDVD +    YE LL L E +G AK  GL+ + +E LP++ F P                 E       +CVVC+C+ E  + +R LP C H FH   CVD WL+++ +CP+C+A
Sbjct:  335 LDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEHLPSYRFNP-----------------ESHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHA-KCVDKWLKANRTCPICRA 432          
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|604347764|gb|EYU45919.1| (hypothetical protein MIMGU_mgv1a023632mg [Erythranthe guttata])

HSP 1 Score: 81.2629 bits (199), Expect = 3.108e-13
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 0
Query:  621 LIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCK 715
            +I PA + GL PS ++ +P   F P+                    E GL C VCLCEV EGE  R LP+C H FH   C+D+WL SH++CP+C+
Sbjct:   80 VILPAARRGLDPSVLKSIPVVVFDPKEF------------------ENGLECAVCLCEVSEGEKARVLPKCSHGFHAE-CIDMWLHSHSTCPICR 155          
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|1191647607|gb|OTF99580.1| (putative zinc finger, RING/FYVE/PHD-type [Helianthus annuus])

HSP 1 Score: 78.5666 bits (192), Expect = 3.792e-13
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 0
Query:  630 LSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCK 715
            L  S V  +PAH        +H   PG   +GG   G+   MC +CLCE EE E +RTLP C H FH P C+D+WL SH++CP+C+
Sbjct:   76 LENSVVLLIPAH--------KHQKGPGLGTKGGS--GDDDAMCSICLCEFEEDEELRTLPECLHSFHVP-CIDMWLCSHSTCPICR 150          
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|695044226|ref|XP_009409852.1| (PREDICTED: RING-H2 finger protein ATL2-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 79.7221 bits (195), Expect = 8.594e-13
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 0
Query:  625 AKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVVVVGGR 723
            A   GL+P+ ++ LP   F              +  GGEEG +  + C VCL E EEGE +R LPRCGHRFH   C+D+W  SH +CP+C++ V    R
Sbjct:   76 ADHRGLNPTVLKSLPVFVF-------------AAAAGGEEGDDDVVECPVCLNEFEEGEKMRALPRCGHRFH-IECIDMWFHSHATCPLCRSAVEASAR 160          
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|1011579957|gb|KYO29941.1| (hypothetical protein Y1Q_0005141 [Alligator mississippiensis])

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-13
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 0
Query:  603 VDLDVDAM---GYEELLLLGELIGPAKKAGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKA 716
            +DLDVD +    YE LL L E +G AK  GL+ + +E LP++ F P S                   E+ L CVVC  + E  + +R LP C H FH   CVD WL+++ +CP+C+A
Sbjct:   54 LDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEHLPSYRFNPES----------------HQSEQTL-CVVCFSDFEARQLLRVLP-CNHEFHA-KCVDKWLKANRTCPICRA 151          
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|848923661|ref|XP_012858106.1| (PREDICTED: RING-H2 finger protein ATL44-like [Erythranthe guttata])

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-12
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 0
Query:  667 ERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVVV 719
            E G  C +CLCE E+GE VRTLP C H FH P C+D+WL SH++CPVC+  +V
Sbjct:   83 EDGASCAICLCEFEDGEEVRTLPECAHAFHAP-CIDMWLYSHSNCPVCRRALV 134          
BLAST of EWM23610.1 vs. NCBI_GenBank
Match: gi|1091679914|ref|XP_009394200.2| (PREDICTED: RING-H2 finger protein ATL40-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 78.9518 bits (193), Expect = 1.676e-12
Identity = 44/91 (48.35%), Postives = 50/91 (54.95%), Query Frame = 0
Query:  628 AGLSPSQVEDLPAHPFLPRSLFRHLISPGKSCRGGEEGGERGLMCVVCLCEVEEGETVRTLPRCGHRFHGPGCVDVWLESHNSCPVCKAVV 718
             GL PS +  LPA PF  RS             G EE G     C VCL   EEGE VR LP C H FH  GC+D+WL SH +CPVC+A+V
Sbjct:  131 VGLDPSAIAALPAFPFRRRS-------------GSEEEGSAA-DCAVCLGAAEEGEMVRLLPDCKHLFH-VGCIDMWLASHVTCPVCRAMV 206          
The following BLAST results are available for this feature:
BLAST of EWM23610.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104757|gb|EWM23610.1|0.000e+0100.00ring-h2 finger protein atl5f [Nannochloropsis gadi... [more]
gi|976925914|gb|KVI09797.1|9.481e-1458.93Zinc finger, RING/FYVE/PHD-type [Cynara cardunculu... [more]
gi|848847867|ref|XP_012832839.1|1.098e-1341.05PREDICTED: RING-H2 finger protein ATL2 [Erythranth... [more]
gi|1003955740|ref|XP_015731598.1|2.736e-1337.61PREDICTED: RING finger protein 44 isoform X2 [Cotu... [more]
gi|604347764|gb|EYU45919.1|3.108e-1341.05hypothetical protein MIMGU_mgv1a023632mg [Erythran... [more]
gi|1191647607|gb|OTF99580.1|3.792e-1345.35putative zinc finger, RING/FYVE/PHD-type [Helianth... [more]
gi|695044226|ref|XP_009409852.1|8.594e-1341.41PREDICTED: RING-H2 finger protein ATL2-like [Musa ... [more]
gi|1011579957|gb|KYO29941.1|9.944e-1338.46hypothetical protein Y1Q_0005141 [Alligator missis... [more]
gi|848923661|ref|XP_012858106.1|1.421e-1258.49PREDICTED: RING-H2 finger protein ATL44-like [Eryt... [more]
gi|1091679914|ref|XP_009394200.2|1.676e-1248.35PREDICTED: RING-H2 finger protein ATL40-like [Musa... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7082rna7082Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications