rna7080, rna7080 (mRNA) Nannochloropsis gaditana

Overview
Namerna7080
Unique Namerna7080
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1037
Alignment locationCM002470.1:397579..399351 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF775
Orig transcript idgnl|cribi|Naga_100550g3.5013.mrna
Orig protein idgnl|cribi|Naga_100550g3.5013
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:397579..399351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100550g3gene6846Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7080rna7080-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23609.1cds7063Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7080 ID=rna7080|Name=rna7080|organism=Nannochloropsis gaditana|type=mRNA|length=1037bp
ACTTGGCGAGCACAAAGAGATGCAACGCACTACTCCTCATTACGAGCAAG
TCTCCTCACGTCATGTGTAGCGTTCCAGAGGTACGCGCAACGGATTAATC
TGGGTTTTTGGTGACCATGCGCCAAATTAGAAGTTATAGCTCCTGCCTTC
TTTTTGGTAATCATGTGCAAAAGTAAAACTAATTGCTGCTGCCCGTATTT
ATCGAAGGCATCGGAGACAAGGTTGCCGTGCATTGGGACAATCACTCGCT
GCTGCTTTTGGACATGGAGGCCAAGGACAGCACTCGTGCAAGGAGTTCTA
CTGACGGGGACGGCAGCGGTGGTAATAGTGGCGCACACTCACAGGCTAAG
CCTATTTCAAGCGGATCTCGAACCGTTGTGGAGGAAAAGGCAGCTGCTAA
GGAGGGAAGGGAGGATCGAGTTCTTCGTTTACAATTGGATCCTCGTCCCC
ACGTAAAATGGGATCAAGACGTTGTAGACAATGAGCACATGAACAAGAAA
AGTTCAAAAAGGTGTTGCATATTTCACAAGAAACGTGCCTTTGGGGAGAG
TTCGAGTGAGAGTGAGAGTGAGGATGATGGAGAGCAAGGGTCAGACGAGG
AGGAAGGGGGTGGAAACAACGGTGAGGGCAAAGGCAAAGGTGGAAGGGGG
AAAAGGAAGGATAGGCATATGCACGTTGCTCAGCCGAAACACCTGCCCAT
AAAACCACATGAGACGTACCACGCATGAGGCGAGGGGAAGGTGGGAGGTT
GTCGCAAGGGACGAGGAGAACCGGATGTATGGATGAGGAGGATGCAAGGT
ACCATTGCAAAGGCGGAATTGGACACGTGGAGAGAGGCCCCTCTGATATT
TTTGAAGTAGAGTATTGCCCTTAAAGCGGGCTCGTCGGACGTTAACTGCC
GTCACTGAGGGTCTGCGAGTGCCCTGTATGGCCTCAGAGTTTGTAGAATA
CGAAGAAAGTGTAAAAAGAATAGCAAAGCCAAGAAATGTCCTGGGCAAGC
ACTGGCTGTCATGCAGGAAGCGATGAATGGTCGACAG
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protein sequence of rna7080

>rna7080-protein ID=rna7080-protein|Name=rna7080|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MASFGVVCPGRPVMVDWRPINETKFVCEIASPAQVTDLTFFLLPNIVLPP
GTGTALYYSLPPFAEWTVLGALTLDKPSGVFRTGWSTIEGIAQMPAIQLG
VSLESLDTITNLDLQKSGVDERRLFAHKIAQDLWSFVCSFAQQTQQGGRE
AVLLPANAMDMWLERFDRKYRLDPSFMFKTGN
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mRNA from alignment at CM002470.1:397579..399351+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7080 ID=rna7080|Name=rna7080|organism=Nannochloropsis gaditana|type=mRNA|length=1773bp|location=Sequence derived from alignment at CM002470.1:397579..399351+ (Nannochloropsis gaditana)
GCATCTCTTTGTGCTCGCCAAGTCGATTACCTCCCACCCCTACAAAACGT
CTGAAGCAGACGACATGTCACATTGCGATTGAACCATTAGCACGTAGGCT
ATATGATGTTGTACACAACGCTCAGATAGTTTGGCGGGCTCTGCGTGTTG
CTTCGTCATGCAATCTTCTTAGCCTTAGGTTGTCTTCTTTGTCCgcgcca
acctcctcccgtgTCGAAAATCGCACGCGGAAGCCATAAATACTCCCCCA
AAAGACAAAACTATACTCATACACCCCCCTAAAAACAGCTAAGATTGCTG
CGTTAGATTTCTTGAAGAGCATTTGTCTGTAGAAGCAAGATCTCATGGCG
TCTTTTGGGGTCGTGTGCCCGGGTCGGCCGGTGATGGTAGATTGGCGGTA
CGTTCATGgcatgtccttctcctccaccacccttgGGTGTAGCAATCGAT
CAGAAATAAATTGTGAGCATGAGTGCTAATTTAGATATGAGCGCATACTT
GGAATTTAGAGGGGCCTGAAAACCATCAGGCATCGCGCCATTCCTGGAGT
CAGGGGATGTTACTTATTTCCTCTCTCGGACTATCAATTCTTGTCCCCTT
CTTCTTATATCCATCTCAGACCAATCAATGAGACCAAGTTCGTTTGTGAA
ATCGCCTCTCCCGCGCAAGTAACGGACCTgactttctttctcctccccaa
cATCGTGCTACCCCCCGGCACCGGGACGGCCCTCTACtattctcttcccc
cctttgccgAATGGACCGTCCTGGGAGCTCTAACACTGGACAAGCCCAGG
TATGAGCAAAGTCAGAAACGATCAGCGAGGTATACGAGTGTCAATCGTGC
GATGTGTTGAGTGGTAAGAGATCTTTTGATGGCTATTCGAGCTATGAAGT
TTGGGTGGATGGGTACTGTGAGGGGACGACAGGCAATGCGGTCCCGCTGA
GTGAAGTGCTTTACTCCAAAGACCATTGAGCTGACGCTTTTGTCCTCATT
TTTACAGCGGTGTTTTCCGTACCGGCTGGTCCACGATTGAAGGAATCGCC
CAGATGCCAGCCATTCAACTTGGGGTCTCCCTGGAAAGGTCAGCTGCGTG
TAGCTTgtctcatcctctccttttcttttttaagACTGAAACAGGATGGA
GCTTTTTGTTCCTCTCTCGCTGCGAGCATATCATCTTGTCCACTTCATTT
TCATGAAATAAAAACGTGTTGCATCGATCCGCTCCTCAGCCTCCCTTCAA
CTTCTCTGTTTCCCTGACGACTACCCCGCCCACATCCAGTCTCGACACGA
TCACAAATCTAGACCTGCAGAAATCTGGCGTGGATGAACGGCGGCTCTTT
GCTCATAAAATTGCCCAGGATCTATGGTCGTTTGTATGCTCCTTTGCGCA
GCAAAcgcagcaaggagggcgagaggcagTGCTTCTCCCCGCAAATGCCA
TGGATATGTGGCTTGAGAGATTCGATAGAAAGTATCGACTGGACCCATCC
TTTATGTTCAAGACAGGGAATTAAAGATTTTGAAGATCCAATCATAGTTT
AGAAAGGAAGAACTGCAGGAAAGGGctcggggtggggaggttaagctgag
ggggaaaaggaaagaccTAGGGGGCTGTAAATGAAATTGCACAGCGAAAT
ATTGTTGCAGGAAGTGCTGCAACAATAGAGCTCGAACCAACCGTGCAAAA
AGACATAAAAACTTATAAAAGTTCGATGAATTGTTTGAAATGAGGCATAT
GTTGGCTCCGTAAAATTTTCACG
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Coding sequence (CDS) from alignment at CM002470.1:397579..399351+

>rna7080 ID=rna7080|Name=rna7080|organism=Nannochloropsis gaditana|type=CDS|length=2196bp|location=Sequence derived from alignment at CM002470.1:397579..399351+ (Nannochloropsis gaditana)
ATGGCGTCTTTTGGGGTCGTGTGCCCGGGTCGGCCGGTGATGGTAGATTG
GCGACCAATCAATGAGACCAAGTTCGTTTGTGAAATCGCCTCTCCCGCGC
AAGTAACGGACCTgactttctttctcctccccaacATCGTGCTACCCCCC
GGCACCGGGACGGCCCTCTACtattctcttcccccctttgccgAATGGAC
CGTCCTGGGAGCTCTAACACTGGACAAGCCCAGCGGTGTTTTCCGTACCG
GCTGGTCCACGATTGAAGGAATCGCCCAGATGCCAGCCATTCAACTTGGG
GTCTCCCTGGAAAGTCTCGACACGATCACAAATCTAGACCTGCAGAAATC
TGGCGTGGATGAACGGCGGCTCTTTGCTCATAAAATTGCCCAGGATCTAT
GGTCGTTTGTATGCTCCTTTGCGCAGCAAAcgcagcaaggagggcgagag
gcagTGCTTCTCCCCGCAAATGCCATGGATATGTGGCTTGAGAGATTCGA
TAGAAAGTATCGACTGGACCCATCCTTTATGTTCAAGACAGGGAATTAAA
TGGCGTCTTTTGGGGTCGTGTGCCCGGGTCGGCCGGTGATGGTAGATTGG
CGACCAATCAATGAGACCAAGTTCGTTTGTGAAATCGCCTCTCCCGCGCA
AGTAACGGACCTgactttctttctcctccccaacATCGTGCTACCCCCCG
GCACCGGGACGGCCCTCTACtattctcttcccccctttgccgAATGGACC
GTCCTGGGAGCTCTAACACTGGACAAGCCCAGCGGTGTTTTCCGTACCGG
CTGGTCCACGATTGAAGGAATCGCCCAGATGCCAGCCATTCAACTTGGGG
TCTCCCTGGAAAGTCTCGACACGATCACAAATCTAGACCTGCAGAAATCT
GGCGTGGATGAACGGCGGCTCTTTGCTCATAAAATTGCCCAGGATCTATG
GTCGTTTGTATGCTCCTTTGCGCAGCAAAcgcagcaaggagggcgagagg
cagTGCTTCTCCCCGCAAATGCCATGGATATGTGGCTTGAGAGATTCGAT
AGAAAGTATCGACTGGACCCATCCTTTATGTTCAAGACAGGGAATTAAAT
GGCGTCTTTTGGGGTCGTGTGCCCGGGTCGGCCGGTGATGGTAGATTGGC
GACCAATCAATGAGACCAAGTTCGTTTGTGAAATCGCCTCTCCCGCGCAA
GTAACGGACCTgactttctttctcctccccaacATCGTGCTACCCCCCGG
CACCGGGACGGCCCTCTACtattctcttcccccctttgccgAATGGACCG
TCCTGGGAGCTCTAACACTGGACAAGCCCAGCGGTGTTTTCCGTACCGGC
TGGTCCACGATTGAAGGAATCGCCCAGATGCCAGCCATTCAACTTGGGGT
CTCCCTGGAAAGTCTCGACACGATCACAAATCTAGACCTGCAGAAATCTG
GCGTGGATGAACGGCGGCTCTTTGCTCATAAAATTGCCCAGGATCTATGG
TCGTTTGTATGCTCCTTTGCGCAGCAAAcgcagcaaggagggcgagaggc
agTGCTTCTCCCCGCAAATGCCATGGATATGTGGCTTGAGAGATTCGATA
GAAAGTATCGACTGGACCCATCCTTTATGTTCAAGACAGGGAATTAAATG
GCGTCTTTTGGGGTCGTGTGCCCGGGTCGGCCGGTGATGGTAGATTGGCG
ACCAATCAATGAGACCAAGTTCGTTTGTGAAATCGCCTCTCCCGCGCAAG
TAACGGACCTgactttctttctcctccccaacATCGTGCTACCCCCCGGC
ACCGGGACGGCCCTCTACtattctcttcccccctttgccgAATGGACCGT
CCTGGGAGCTCTAACACTGGACAAGCCCAGCGGTGTTTTCCGTACCGGCT
GGTCCACGATTGAAGGAATCGCCCAGATGCCAGCCATTCAACTTGGGGTC
TCCCTGGAAAGTCTCGACACGATCACAAATCTAGACCTGCAGAAATCTGG
CGTGGATGAACGGCGGCTCTTTGCTCATAAAATTGCCCAGGATCTATGGT
CGTTTGTATGCTCCTTTGCGCAGCAAAcgcagcaaggagggcgagaggca
gTGCTTCTCCCCGCAAATGCCATGGATATGTGGCTTGAGAGATTCGATAG
AAAGTATCGACTGGACCCATCCTTTATGTTCAAGACAGGGAATTAA
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Synonyms
Publications