rna7073, rna7073 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7073
Unique Name	rna7073
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3692
Alignment location	CM002470.1:384294..386726 +

Link to JBrowse

Properties


Property Name	Value
Product	poly -binding protein 3
Orig transcript id	gnl\|cribi\|Naga_100137g3.31.mrna
Orig protein id	gnl\|cribi\|Naga_100137g3.31
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:384294..386726 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100137g3	gene6839	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7073	rna7073-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23629.1	cds7056	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:384294..386726+
coding sequence from alignment at CM002470.1:384294..386726+

mRNA sequence

>rna7073 ID=rna7073|Name=rna7073|organism=Nannochloropsis gaditana|type=mRNA|length=3692bp
ATTGTGCAGGCATTTCGATTGTCGGAGGACAAAGGGGCACCGTCCACCTT
CACCCTCCTTTGGATAGAGCCTAAACTACCACTTCCACCGAGAGCTGGCT
TCCGACTTCCACCCACCGCCAGAGCAAAGCCAAGTGTGTAACGAAGGGGG
CTATGAGCAGCCGTATCACGCGCAGTAGCAGCGGTGGAGGTGTTTCGTCC
CCTCCCTCCGTCTCTTTTTCAGAGCGGGCGGGCGTCGCAGGCCCTCTTGA
AGCTAGCCCCGTAGGCCCTCGATGCGCAGGTGGCAGTAACTCCACATTAG
CCATTCGATTTCAAATTCAAGATAAAGAGCAAGTAGATGCACTTTGGGAA
CGCGTGCGGATCGAGGTCTTGGATCCCTTAGAAGCGGCATTGGCGAACTT
TGACCCCCGGGCCACGGAGGTGGTCCGAAAGAAGTATTACGAAGTGTATT
CGAGCGTGTACCACGTCGTGAACGACCCGAACCGAGACGATCTGGACCGG
CACCCGCTCATCCTGGCCAAGCATCTGGAGACCCTCACGAGCTATCTGGA
ACGCGTGACTCTGCCGTCTCTAGCGGCTGCGCACGATGGCTACTTGTTGC
GCGCGGTGGGGGAGCAATGGGGTCGATACGTCGTCTTGAACAACTGGCTG
CATAAGCTCCTCATCTTCGTCGAGCGCAGTTACCTGGGGAGACAACCCGG
GAAAATGGGACTAAAAGAACGAGGTCTCAGGCAATTTTCCAAGATCGTCT
TTTCACGCTCTGGGCAAGGAAGATTGCTCCCCCTGGTCCTCGCCATCGAC
AATGTGGTCACGCGCTGGCGCAGCCAGGGAGAGGGGGATAATGGTGGGGG
AGCGGGGGGGAGGACAGGCCCGACCGTGGACGCGGATGAGAAGGAGGCCT
GTCGAGCTTGTGTGGAGCTCTTGGTCGAGACGGGCGTGACGACGGAGCTA
AAAGACCGGCTGTTGGCCTCGGCCCGCAAGTATTTTGCCGGGAGGGCCGC
TCTCTGGATGGGGGGCCTGGGGGGCCCGGAGGAAGGAGGGAGGGAAGACG
CCAGCCGGGTGGGGTGGTACATGCGGCGCGTGGAGACAGCCCTGCTGCAC
GAAGAGGGCTTGCTACGGGAATTCGATCTAAGTCGGGCTCTGGGGGAGGA
GTCTCTGGTGGTGGCCGTCCAGGAGTTGGTGCAAGCGCACGGGGAGAGTG
TGGTCACGCGGGAGGTCGGGGGCTGCGCCTGGCTCTTGCGGCAGAGACGC
TACGAAGAGCTGGGCTTGATGTACCGACTTCTCCGCAGAGAGATGCTGAC
GGTGGCGGCTGCTCAAGCCGCAGCCAGTGCCGCCGCCGCGGTGGCCGTCA
AGGAAATGTCTGCTCAGGCCGCTGCCGCCGCAGCTGCGGCCCTCGGGGGC
CCGAGCCGGGGGCACGACACCCCCCCCTCCACCCCTCCCTCCGTCTCCTA
TGCGTCAAGGACCTCCTCAACGCCTCACGCACCTCCACCCCACCCCTCCT
TCTCGCCCGCCTCCCCTGAGCTGGCCTCCCTCTCCACCCTCTCGCTCGCC
CCCGGCCCTCTCACCCCCGCCGATCCCTCCGCCTCTGCCTCTCCGCCCTC
CCTCGTCCCCACCCACAGCAGCAGCAGCGAACACCCTCTCCTGGATCGGA
TGGGGGTCATCCTAGAGGCGCACGTTATCTCCCTCGGGGAAGCCTTGCAA
GAAGATCGGAACGCCCGGCTGGCCAAAGACCGACGCCTGGAAGCGCACGA
CCCGCTGTACATCGAGGCCCTGCTGGAGATGCATGCCGAGTACGTGGAAC
TCACCACGTCCGTGCTCGGGGCCCATCGGGTTTTCAAGAGCCGCCTCCAC
GCCGCCTTCGTCGCCATCCTCAACGACCAGACCTCGAAACCCACCGCCTC
GTCTGCGTCCCGTCACCTGCCCCGCCAGGCCCGGACGCAGGGCTCGCGGC
CTTTGGGAGGCAACCTCTCCCTCCGAGGCCAGGAGGAGAAACCTCGGCTG
ATTACAAGCGCCTGCGACCGCCTGTTGCGGGTGGGGGGCACGCGCGAGGA
GGCGAAGGTGAAGGAGATTTTGGGCCTGGTCCTCTACTTGCGGGACAAGG
ACTTCTTCGAGGGCTGTTACCGGACAGAACTCATGCGACGCCTCCTGGCC
AACAGGTACGAAGAAGGCGCAGAAAAATCGGCCATCGCCCGTCTCCGCGT
CGAGCACGGGGTCCACTATGCCCAGCACAGCCAACGCATGCTCAACGAGA
CCGCCACCAGCAAAGAGCTCGTCCACTCCTTCCTCCACTCCTACCCCCCC
GCCCTCGCCCTCCGACGAGAGTCCTGCGTGGACTTTTCCGTCACTGTAAT
GGCACAGGGAGGTTGGCCGGTCCCGGCCGCCTTCGCGCAATTTTCCTGCC
GCCCCCCGCCCGTCCTCGTCTCCTACATGGAGTGTTTCTCGTCCTTCTAC
CTGGGCTTGGACATCGGCCGGGGCAAGAAACTGGACTGGGTCTTGCGGGA
GGGCCTCTTGGTGGTGCAAGCCACCTACCCGTCGAGCAGCGGCGGGAGCC
GGCGCTTCGAAGTGAGCAGTAACCCCCACATGCTTCTCCCCCTCCTTGCC
TTTTCGATCGACGAGAGCAAGTCCCTGTCCCTGGCAGCCCTGCAGGAGCG
CACTGGCATGACAAAAGGTAACTTGGACATTGTATTGGGGGAGCTGAGGA
AGGCGGGCTTCTTGCGAATGGAGACACGGAAAGGAGGGAGGGAGGGGGGG
GGGAAGGGGCGGCGAGGAGAGCATCCTCGGCGTTCTTAGTGCCCCGAGAT
GAAAGCAGCGAGCAAAGGGCGGTCCCACCTTCCTCTTCCTCCTCCTCTTC
CTCCTCTTCCTCCTCCACCTCTGCCTCGTTCTCCGACACGGTCTACGTGA
GCCTGATCCCCGATTTCCGGAGCAAATACAAGCGTCTCACCATCCTGCCC
AAGAAGATGGAGGAGGACAAGGAAAGGGGCATTAGCGAAGACGTGATCAA
GGATAGGACGTTGAAATGCCAAGCCATCCTCGTACGAGTCATGAAGCTAA
AGAAGTGCATGGCCTACCGAGAACTGGTTGTCGAGGTCGTCCGCCAGTGC
CAGCATGCGCACTTCACGCCCGATGTCTCTTTCGTCAGGCGGGTCGTGGA
AGGGCTGATCGACACGGAATACTTGCGACGGGCGGAGGAAAAGAGGGACT
GGCTCGAGTACATCGCGTGAGCTAAAGAGACAGGGAGGCGGTGAGGTCGG
AGAGGAGGTTGGATTAGCAGTGTAGCAACTGAAAGTGGAGTAGAGATGTA
GAAAAGAAGCGACAGGAGGGCATCAAATATGTTAATGGCTGTGTGGCTTG
TCCCTCTCTGTCCGAGTGCTCGGATGTGTTGATATATGCGTCCTTGGGCA
GGGAGAGGAGGGCCGACATGGCCCATTTCGCACGCACGGGAGGAAGGGTT
AAGTCCCTTTCTCAATCGCGTAACAGAAAGCCCTCCTTAGTATTCTTGTG
CATACGCTATTTTCTGGAGCGATGACGGAGTCTATGAGCTGGATGGTACG
AGAAGATGAAGCGGCTTTCACTAGGAAAGTGCTGCACATTATTTAGGTCC
CTACAAGGGCGATTTCGTGCGACATCGAGACGATCCACGGGCCCTCTGAC
ATCCAAACTTGTAAGAAAGTACGCGAAAATTGGATGAGAGGT

protein sequence of rna7073

>rna7073-protein ID=rna7073-protein|Name=rna7073|organism=Nannochloropsis gaditana|type=polypeptide|length=513bp
MVISFCNADIFLRTCLTGISLSFQAAYLFGLAPPPLPLLVASPSPTLRPL
HIRIPRPSSPNVKKHQYRTSALFETRRGVFIEQHERRASSEAKSPTANHH
QTGMLNPTVGGPTSPLDDAHYHHQHQYQHQGEDDNNSPVGMNDRDDLGID
HSEEKVGGNSGGHMTSTGGGNSGNRRRSGGRHSGSGRRLSASLANLSLSS
GLETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPA
FRLVTVSGSVQEVCSAVELISRQAGLFESQQGGEDGEDYPPPGLRLVIDS
SHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGE
AEACRLAHKMICSLLANAYASASSNSPSGHQQQPSVQQASVAVPTASTSF
FSGGDAGYRHTDAYSASLGGLGAEGGGEGGGEEAFDDSCEVIMRVPNEKI
GRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQ
SMIQEKVTGEPGM

mRNA from alignment at CM002470.1:384294..386726+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7073 ID=rna7073|Name=rna7073|organism=Nannochloropsis gaditana|type=mRNA|length=2433bp|location=Sequence derived from alignment at CM002470.1:384294..386726+ (Nannochloropsis gaditana)
CATGGTAATTTCTTTCTGTAATGCTGATATCTTCCTTCGCACCTGCCTCA
CAGGCATCTCCCTGAGTTTCCAAGCGGCTTATCTCTTTGGCCtcgctcca
cctcccctccctctcctcgttgcctcgccttcccctacCCTGCGGCCACT
CCATATTCGCATTCCTAGGCCGTCCTCACCCAACGTGAAGAAACATCAAT
ATCGGACATCCGCACTTTTCGAGACTCGTCGTGGTGTTTTTATAGAGCAA
CACGAGCGGAGAGCATCGTCAGAAGCAAAGTCTCCTACAGCGAATCATCA
CCAGACAGGAATGCTTAATCCCACCGTAGGCGGCCCGACTTCCCCGTTAG
ACGACGCGCACTACCATCACCAACACCAGTATCAGCaccaaggggaggac
gacaacaATTCTCCTGTCGGGTAAGTGCTCATGAGGAGTGGAACATCGTT
CTTTGAGAACGCTAAAGGCGGGATCCGGTCTCCGCCGTCAAGGTTGCTTC
CCTCGCGATGCGCCCCTGCCCGCGTCCATCTTTTGTTCTCCCGCCTTGGC
GTGGAAATTGATAAATACATATCAATGCAGAAAgcaaagagaaaagggat
TCCTGGTGGCCGTCCTACCTTCTACGCCCTGCCCGGCGAACCCGGGCGTT
CGCCTAGTGTgcccctctcaccctccctccctcccatccaccctcccctt
tccccccttggcctgcgcctgcctcctgcaGGATGAACGACCGTGATGAC
CTGGGCATTGACCactcggaggagaaggtcggtGGAAATAGCGGCGGGCA
TATGACCAGTACCGGCGGGGGCAACTCGGGGAACCGTCGTCGCAGCGGAG
GCCGACACAGCGGCAGCGGTCGACGCCTGAGTGCCTCCCTGGCGAActtg
tccctctcctccggcttGGAAACCACTacctgtctcctccttcccgcctc
gcGCATCGGGGGCGTGAttgggcggggcggggacgtgATCAAGGGGATCC
GTGAGCTGACCGGCACCCGCATCCACATATCGCCCGCGGCAGAGGACGAC
AGAgaccccgccttccgcctGGTGACCGTGTCTGGGAGCGTTCAAGAGGT
GTGCTCGGCGGTGGAGTTGATTTCTCGCCAGGCCGGGCTGTTCGAGAGCc
agcagggcggggaagacggggaggactacccccccccgggcctccGCTTG
GTCATCGACAGCAGTCACGCCGGCCAGGTGATCGGGAAGAAAGGCGCGAC
CATCAACGAGATCCGGACCCAGAGCCAAGCTCGCATCCAGGTCCtgtcgg
acgaggagagcgccGAGGAAGGCGCTCTGAGCATGGAGCGGGTGATCCTC
CTGatcggggaggcggaggcctgTCGGCTCGCCCACAAAATGAtctgctc
cctcctggccAATGCCTAtgcctccgcatcctccaaCTCTCCCTCGGGCC
ATCAGCAACAGCCGTCAGTCCAGCAGGCCTCGGTGGCCGTGCCTAcggct
tccacctccttcttcagcgGGGGCGACGCGGGCTACCGCCACACGGACGC
CTACAGCGCCTCTTTGGGTGggctgggggcggagggagggggggaaggcg
ggggggaggaggctttcgACGATTCCTGCGAAGTGATCATGCGCGTCCCC
AACGAGAAGATTGGCCGCGTTAtcgggcaagggggaagcgTGGTGAACCA
GATTCGGGCAGAGTCGGGGTGCCGTGTCGACATCGAGAACACTCGGACGG
GAGAGCAGGCACTGCGGGTGATTCGGATCACCGGGAGCGTGGCCCAGACG
CAGGCGGCTCAGTCTATGATTCAGGAGAAGGTGACGGGCGAGCCGGGGAt
gtgaaggggggggagggagggagggagggcggctcgAAGGGTggagtcga
ggaggaggttggaggtaAAGATGGAGGGGTCATGTGACGAGGAAAtacag
gaagaagggacaGAAGGGAATGTTTCGACCGCCGAGCGAGTGTGTCCAAT
AAAGGGGCCGTCGAAGATGGGAAAGCACCAGGGAGCTAGGGGTATCCGCG
GGTAAGAGATGGGGAGTGCGAAAGGGTGTGGTACGGGGCGCGAGCTTGCC
CCGGGACAGCGTGGGGGACTGCAGACaccaggggggaaggcgtaagcggg
agggtcgagcaatgagggaggagagagaggaaggtcaagaaggagggggg
gggcaagggcaaggggagtgaggagagACGGCGGCGCACGGCCGGGTCAG
cagcgaggatggggagggcgaggcgaagcgatcgaagggggaagggggag
aagaaacaAGGAGCCAGGACAAGACAGCATCCAGAGAAGAGACCATAAAA
TAGACCTGGAGTTGCATGGATGCGATTGGTGCGTTTTGGGATGTCGAGTT
GAAGGTTCCTTTTGAAGTCGCGTGAAATCCAGG

Coding sequence (CDS) from alignment at CM002470.1:384294..386726+

>rna7073 ID=rna7073|Name=rna7073|organism=Nannochloropsis gaditana|type=CDS|length=3084bp|location=Sequence derived from alignment at CM002470.1:384294..386726+ (Nannochloropsis gaditana)
ATGGTAATTTCTTTCTGTAATGCTGATATCTTCCTTCGCACCTGCCTCAC
AGGCATCTCCCTGAGTTTCCAAGCGGCTTATCTCTTTGGCCtcgctccac
ctcccctccctctcctcgttgcctcgccttcccctacCCTGCGGCCACTC
CATATTCGCATTCCTAGGCCGTCCTCACCCAACGTGAAGAAACATCAATA
TCGGACATCCGCACTTTTCGAGACTCGTCGTGGTGTTTTTATAGAGCAAC
ACGAGCGGAGAGCATCGTCAGAAGCAAAGTCTCCTACAGCGAATCATCAC
CAGACAGGAATGCTTAATCCCACCGTAGGCGGCCCGACTTCCCCGTTAGA
CGACGCGCACTACCATCACCAACACCAGTATCAGCaccaaggggaggacg
acaacaATTCTCCTGTCGGGATGAACGACCGTGATGACCTGGGCATTGAC
CactcggaggagaaggtcggtGGAAATAGCGGCGGGCATATGACCAGTAC
CGGCGGGGGCAACTCGGGGAACCGTCGTCGCAGCGGAGGCCGACACAGCG
GCAGCGGTCGACGCCTGAGTGCCTCCCTGGCGAActtgtccctctcctcc
ggcttGGAAACCACTacctgtctcctccttcccgcctcgcGCATCGGGGG
CGTGAttgggcggggcggggacgtgATCAAGGGGATCCGTGAGCTGACCG
GCACCCGCATCCACATATCGCCCGCGGCAGAGGACGACAGAgaccccgcc
ttccgcctGGTGACCGTGTCTGGGAGCGTTCAAGAGGTGTGCTCGGCGGT
GGAGTTGATTTCTCGCCAGGCCGGGCTGTTCGAGAGCcagcagggcgggg
aagacggggaggactacccccccccgggcctccGCTTGGTCATCGACAGC
AGTCACGCCGGCCAGGTGATCGGGAAGAAAGGCGCGACCATCAACGAGAT
CCGGACCCAGAGCCAAGCTCGCATCCAGGTCCtgtcggacgaggagagcg
ccGAGGAAGGCGCTCTGAGCATGGAGCGGGTGATCCTCCTGatcggggag
gcggaggcctgTCGGCTCGCCCACAAAATGAtctgctccctcctggccAA
TGCCTAtgcctccgcatcctccaaCTCTCCCTCGGGCCATCAGCAACAGC
CGTCAGTCCAGCAGGCCTCGGTGGCCGTGCCTAcggcttccacctccttc
ttcagcgGGGGCGACGCGGGCTACCGCCACACGGACGCCTACAGCGCCTC
TTTGGGTGggctgggggcggagggagggggggaaggcgggggggaggagg
ctttcgACGATTCCTGCGAAGTGATCATGCGCGTCCCCAACGAGAAGATT
GGCCGCGTTAtcgggcaagggggaagcgTGGTGAACCAGATTCGGGCAGA
GTCGGGGTGCCGTGTCGACATCGAGAACACTCGGACGGGAGAGCAGGCAC
TGCGGGTGATTCGGATCACCGGGAGCGTGGCCCAGACGCAGGCGGCTCAG
TCTATGATTCAGGAGAAGGTGACGGGCGAGCCGGGGAtgtgaATGGTAAT
TTCTTTCTGTAATGCTGATATCTTCCTTCGCACCTGCCTCACAGGCATCT
CCCTGAGTTTCCAAGCGGCTTATCTCTTTGGCCtcgctccacctcccctc
cctctcctcgttgcctcgccttcccctacCCTGCGGCCACTCCATATTCG
CATTCCTAGGCCGTCCTCACCCAACGTGAAGAAACATCAATATCGGACAT
CCGCACTTTTCGAGACTCGTCGTGGTGTTTTTATAGAGCAACACGAGCGG
AGAGCATCGTCAGAAGCAAAGTCTCCTACAGCGAATCATCACCAGACAGG
AATGCTTAATCCCACCGTAGGCGGCCCGACTTCCCCGTTAGACGACGCGC
ACTACCATCACCAACACCAGTATCAGCaccaaggggaggacgacaacaAT
TCTCCTGTCGGGATGAACGACCGTGATGACCTGGGCATTGACCactcgga
ggagaaggtcggtGGAAATAGCGGCGGGCATATGACCAGTACCGGCGGGG
GCAACTCGGGGAACCGTCGTCGCAGCGGAGGCCGACACAGCGGCAGCGGT
CGACGCCTGAGTGCCTCCCTGGCGAActtgtccctctcctccggcttGGA
AACCACTacctgtctcctccttcccgcctcgcGCATCGGGGGCGTGAttg
ggcggggcggggacgtgATCAAGGGGATCCGTGAGCTGACCGGCACCCGC
ATCCACATATCGCCCGCGGCAGAGGACGACAGAgaccccgccttccgcct
GGTGACCGTGTCTGGGAGCGTTCAAGAGGTGTGCTCGGCGGTGGAGTTGA
TTTCTCGCCAGGCCGGGCTGTTCGAGAGCcagcagggcggggaagacggg
gaggactacccccccccgggcctccGCTTGGTCATCGACAGCAGTCACGC
CGGCCAGGTGATCGGGAAGAAAGGCGCGACCATCAACGAGATCCGGACCC
AGAGCCAAGCTCGCATCCAGGTCCtgtcggacgaggagagcgccGAGGAA
GGCGCTCTGAGCATGGAGCGGGTGATCCTCCTGatcggggaggcggaggc
ctgTCGGCTCGCCCACAAAATGAtctgctccctcctggccAATGCCTAtg
cctccgcatcctccaaCTCTCCCTCGGGCCATCAGCAACAGCCGTCAGTC
CAGCAGGCCTCGGTGGCCGTGCCTAcggcttccacctccttcttcagcgG
GGGCGACGCGGGCTACCGCCACACGGACGCCTACAGCGCCTCTTTGGGTG
ggctgggggcggagggagggggggaaggcgggggggaggaggctttcgAC
GATTCCTGCGAAGTGATCATGCGCGTCCCCAACGAGAAGATTGGCCGCGT
TAtcgggcaagggggaagcgTGGTGAACCAGATTCGGGCAGAGTCGGGGT
GCCGTGTCGACATCGAGAACACTCGGACGGGAGAGCAGGCACTGCGGGTG
ATTCGGATCACCGGGAGCGTGGCCCAGACGCAGGCGGCTCAGTCTATGAT
TCAGGAGAAGGTGACGGGCGAGCCGGGGAtgtga

Synonyms

Publications