EWM23629.1, cds7056 (CDS) Nannochloropsis gaditana

Overview
NameEWM23629.1
Unique Namecds7056
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:384295..384713 +
Alignment locationCM002470.1:385025..386147 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23629.1
Productpoly -binding protein 3
Orig transcript idgnl|cribi|Naga_100137g3.31.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:384295..384713 +
CM002470.1supercontigCM002470.1:385025..386147 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
BLAST of EWM23629.1 vs. NCBI_GenBank
Match: gi|585104780|gb|EWM23629.1| (poly -binding protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 1040.41 bits (2689), Expect = 0.000e+0
Identity = 513/513 (100.00%), Postives = 513/513 (100.00%), Query Frame = 0
Query:    1 MVISFCNADIFLRTCLTGISLSFQAAYLFGLAPPPLPLLVASPSPTLRPLHIRIPRPSSPNVKKHQYRTSALFETRRGVFIEQHERRASSEAKSPTANHHQTGMLNPTVGGPTSPLDDAHYHHQHQYQHQGEDDNNSPVGMNDRDDLGIDHSEEKVGGNSGGHMTSTGGGNSGNRRRSGGRHSGSGRRLSASLANLSLSSGLETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFESQQGGEDGEDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSLLANAYASASSNSPSGHQQQPSVQQASVAVPTASTSFFSGGDAGYRHTDAYSASLGGLGAEGGGEGGGEEAFDDSCEVIMRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQEKVTGEPGM 513
            MVISFCNADIFLRTCLTGISLSFQAAYLFGLAPPPLPLLVASPSPTLRPLHIRIPRPSSPNVKKHQYRTSALFETRRGVFIEQHERRASSEAKSPTANHHQTGMLNPTVGGPTSPLDDAHYHHQHQYQHQGEDDNNSPVGMNDRDDLGIDHSEEKVGGNSGGHMTSTGGGNSGNRRRSGGRHSGSGRRLSASLANLSLSSGLETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFESQQGGEDGEDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSLLANAYASASSNSPSGHQQQPSVQQASVAVPTASTSFFSGGDAGYRHTDAYSASLGGLGAEGGGEGGGEEAFDDSCEVIMRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQEKVTGEPGM
Sbjct:    1 MVISFCNADIFLRTCLTGISLSFQAAYLFGLAPPPLPLLVASPSPTLRPLHIRIPRPSSPNVKKHQYRTSALFETRRGVFIEQHERRASSEAKSPTANHHQTGMLNPTVGGPTSPLDDAHYHHQHQYQHQGEDDNNSPVGMNDRDDLGIDHSEEKVGGNSGGHMTSTGGGNSGNRRRSGGRHSGSGRRLSASLANLSLSSGLETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFESQQGGEDGEDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSLLANAYASASSNSPSGHQQQPSVQQASVAVPTASTSFFSGGDAGYRHTDAYSASLGGLGAEGGGEGGGEEAFDDSCEVIMRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQEKVTGEPGM 513          
BLAST of EWM23629.1 vs. NCBI_GenBank
Match: gi|585692726|ref|XP_006821506.1| (PREDICTED: poly(rC)-binding protein 3-like isoform X6 [Saccoglossus kowalevskii])

HSP 1 Score: 115.161 bits (287), Expect = 1.257e-24
Identity = 92/319 (28.84%), Postives = 146/319 (45.77%), Query Frame = 0
Query:  208 LLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFESQQGGEDGEDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEAC-RLAHKMICSLLAN-------AYASASSNSPSGHQQQPSVQQASVAVPTASTSFFSGGDAGYRHTDAY--------SASLGGLGAEGGGEGGGEEAFDDSCEVIMRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQEKVTGE 510
            L++    +G +IG+GG+ IK  RE +G RI+IS     D   A R+VTV+GS + + +A E+I+++     S          PP  LRLV+ +S  G +IGK G+ I EIR  + A +QV  D         S ER + + G  EA  +  +++ C +L +        Y    +N+ + H         +V  P     F        +HT           +A   G G       G + A        + +PN+ IG VIG+GG+ +N+IR  SG  + I N++ G    R + I+G+V     A  +I  ++  E
Sbjct:   23 LIMQGKEVGSIIGKGGETIKKFREQSGARINIS-----DSSCAERIVTVTGSTEAINNAFEMITKKFEEDVSNNMANSSTPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRENTGASVQVAGDMLHQ-----STERAVTISGTPEAITKCVYQICCVMLESPPKGATIPYRPKPTNATATHPAYAVHGNYAVPYP----DFMKLHHLTMQHTPFLPGQTPFTPTALNMGYGVANAASAGTQVATTGQQTYEIMIPNDLIGCVIGRGGAKINEIRQISGATIKIANSQEGSND-RSVTISGTVEAINLAHFLINSRIRTE 326          
BLAST of EWM23629.1 vs. NCBI_GenBank
Match: gi|585692718|ref|XP_006821504.1| (PREDICTED: poly(rC)-binding protein 3-like isoform X4 [Saccoglossus kowalevskii])

HSP 1 Score: 113.62 bits (283), Expect = 4.667e-24
Identity = 95/326 (29.14%), Postives = 152/326 (46.63%), Query Frame = 0
Query:  208 LLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFESQQGGEDGEDY-------PPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEAC-RLAHKMICSLLANA-------YASASSNSPSGHQQQPSVQQASVAVPTASTSFFSGGDAGYRHTDAY--------SASLGGLGAEGGGEGGGEEAFDDSCEVIMRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQEKVTGE 510
            L++    +G +IG+GG+ IK  RE +G RI+IS     D   A R+VTV+GS + + +A E+I+++   FE + GG+   +        PP  LRLV+ +S  G +IGK G+ I EIR  + A +QV  D         S ER + + G  EA  +  +++ C +L +        Y    +N+ + H         +V  P     F        +HT           +A   G G       G + A        + +PN+ IG VIG+GG+ +N+IR  SG  + I N++ G    R + I+G+V     A  +I  ++  E
Sbjct:   23 LIMQGKEVGSIIGKGGETIKKFREQSGARINIS-----DSSCAERIVTVTGSTEAINNAFEMITKK---FE-EVGGDVSNNMANSSTPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRENTGASVQVAGDMLHQ-----STERAVTISGTPEAITKCVYQICCVMLESPPKGATIPYRPKPTNATATHPAYAVHGNYAVPYP----DFMKLHHLTMQHTPFLPGQTPFTPTALNMGYGVANAASAGTQVATTGQQTYEIMIPNDLIGCVIGRGGAKINEIRQISGATIKIANSQEGSND-RSVTISGTVEAINLAHFLINSRIRTE 329          
BLAST of EWM23629.1 vs. NCBI_GenBank
Match: gi|291237680|ref|XP_002738761.1| (PREDICTED: poly(rC)-binding protein 3-like isoform X1 [Saccoglossus kowalevskii])

HSP 1 Score: 113.235 bits (282), Expect = 1.372e-23
Identity = 92/313 (29.39%), Postives = 144/313 (46.01%), Query Frame = 0
Query:  208 LLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFESQQGGEDGEDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEAC-RLAHKMICSLLAN-------AYASASSNSPSGHQQQPSVQQASVAVP--------TASTSFFSGGDAGYRHTDAYSASLGGLGAEGGGEGGGEEAFDDSCEVIMRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQ 504
            L++    +G +IG+GG+ IK  RE +G RI+IS     D   A R+VTV+GS + + +A E+I+++     S          PP  LRLV+ +S  G +IGK G+ I EIR  + A +QV  D         S ER + + G  EA  +  +++ C +L +        Y    +N+ + H         +V  P        T   + F  G   +  T    A   G G       G + A        + +PN+ IG VIG+GG+ +N+IR  SG  + I N++ G    R + I+G+V     A  +I 
Sbjct:   23 LIMQGKEVGSIIGKGGETIKKFREQSGARINIS-----DSSCAERIVTVTGSTEAINNAFEMITKKFEEDVSNNMANSSTPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRENTGASVQVAGDMLHQ-----STERAVTISGTPEAITKCVYQICCVMLESPPKGATIPYRPKPTNATATHPAYAVHGNYAVPYPDFMKLHHLTMQHTPFLPGQTPFTPT----ALNMGYGVANAASAGTQVATTGQQTYEIMIPNDLIGCVIGRGGAKINEIRQISGATIKIANSQEGSND-RSVTISGTVEAINLAHFLIN 320          
BLAST of EWM23629.1 vs. NCBI_GenBank
Match: gi|585692707|ref|XP_006821502.1| (PREDICTED: poly(rC)-binding protein 3-like isoform X2 [Saccoglossus kowalevskii] >gi|585692711|ref|XP_006821503.1| PREDICTED: poly(rC)-binding protein 3-like isoform X3 [Saccoglossus kowalevskii])

HSP 1 Score: 111.694 bits (278), Expect = 4.732e-23
Identity = 95/320 (29.69%), Postives = 150/320 (46.88%), Query Frame = 0
Query:  208 LLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFESQQGGEDGEDY-------PPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEAC-RLAHKMICSLLANA-------YASASSNSPSGHQQQPSVQQASVAVP--------TASTSFFSGGDAGYRHTDAYSASLGGLGAEGGGEGGGEEAFDDSCEVIMRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQ 504
            L++    +G +IG+GG+ IK  RE +G RI+IS     D   A R+VTV+GS + + +A E+I+++   FE + GG+   +        PP  LRLV+ +S  G +IGK G+ I EIR  + A +QV  D         S ER + + G  EA  +  +++ C +L +        Y    +N+ + H         +V  P        T   + F  G   +  T    A   G G       G + A        + +PN+ IG VIG+GG+ +N+IR  SG  + I N++ G    R + I+G+V     A  +I 
Sbjct:   23 LIMQGKEVGSIIGKGGETIKKFREQSGARINIS-----DSSCAERIVTVTGSTEAINNAFEMITKK---FE-EVGGDVSNNMANSSTPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRENTGASVQVAGDMLHQ-----STERAVTISGTPEAITKCVYQICCVMLESPPKGATIPYRPKPTNATATHPAYAVHGNYAVPYPDFMKLHHLTMQHTPFLPGQTPFTPT----ALNMGYGVANAASAGTQVATTGQQTYEIMIPNDLIGCVIGRGGAKINEIRQISGATIKIANSQEGSND-RSVTISGTVEAINLAHFLIN 323          
BLAST of EWM23629.1 vs. NCBI_GenBank
Match: gi|1207832551|gb|OWK10062.1| (PCBP1, partial [Cervus elaphus hippelaphus])

HSP 1 Score: 109.768 bits (273), Expect = 6.534e-23
Identity = 96/321 (29.91%), Postives = 147/321 (45.79%), Query Frame = 0
Query:  200 SGLETTTC--LLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELI-SRQAGLFESQQGGEDGEDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSLLANAYASASSNSPSGHQQQPSVQQASVAVPTASTSFFSG--GDAGYRHTDAYSASLGGLGAEGGGEGGGEEAFDDSCEVI--MRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQEKVTGEPGM 513
            SGL  T    LL+    +G +IG+ G+ +K IRE +G RI+IS     + +   R++T++G    +  A  +I  +      S          PP  LRLV+ ++  G +IGK G  I EIR  + A++QV  D         S ER I + G  ++     K IC ++        S SP G       Q     +P +S S F+   G  G+   D+ S  + G  A          + D S +    + +PN  IG +IG+ G+ +N+IR  SG ++ I N   G    R + ITGS A    AQ +I  +++ E GM
Sbjct:    8 SGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINIS-----EGNCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN-----STERAITIAGVPQSVTECVKQICLVMLETL----SQSPQGRVMTIPYQ----PMPASSPSHFAMMHGGTGFAGIDSSSPEVKGYWA----------SLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSG-RQVTITGSAASISLAQYLINARLSSEKGM 299          
BLAST of EWM23629.1 vs. NCBI_GenBank
Match: gi|942048875|ref|XP_014333008.1| (PREDICTED: poly(rC)-binding protein 1 isoform X3 [Bos mutus])

HSP 1 Score: 108.612 bits (270), Expect = 1.048e-22
Identity = 97/323 (30.03%), Postives = 148/323 (45.82%), Query Frame = 0
Query:  200 SGLETTTC--LLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELI-SRQAGLFESQQGGEDGEDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSLLANAYASASSNSPS----GHQQQPSVQQASVAVPTASTSFFSGGDAGYRHTDAYSASLGGLGAEGGGEGGGEEAFDDSCEVI--MRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQEKVTGEPGM 513
            SGL  T    LL+    +G +IG+ G+ +K IRE +G RI+IS     + +   R++T++G    +  A  +I  +      S          PP  LRLV+ ++  G +IGK G  I EIR  + A++QV  D         S ER I + G  ++     K IC ++  AY+    ++ S        Q + QQ+  A+    T  F+G D+       Y ASL                 D S +    + +PN  IG +IG+ GS +N+IR  SG ++ I N   G    R + ITGS A    AQ +I  +++ E GM
Sbjct:    8 SGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINIS-----EGNCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN-----STERAITIAGVPQSVTECVKQICLVMLEAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTG-FAGIDSSSPEVKGYWASL-----------------DASTQTTHELTIPNNLIGCIIGRQGSNINEIRQMSGAQIKIANPVEGSSG-RQVTITGSAASISLAQYLINARLSSEKGM 301          
BLAST of EWM23629.1 vs. NCBI_GenBank
Match: gi|674063687|ref|XP_008838677.1| (PREDICTED: poly(rC)-binding protein 3 isoform X9 [Nannospalax galili])

HSP 1 Score: 108.997 bits (271), Expect = 1.622e-22
Identity = 96/333 (28.83%), Postives = 157/333 (47.15%), Query Frame = 0
Query:  186 GRRLSASLANLSLSSGLETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFE----SQQGGEDGEDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSLLANAYA----SASSNSPSGHQQQPSVQQASVAVPTASTSFFSGGDAGYRHTDAYSASLGGLGAEGGGEGGGEEAFDDSCEVIMRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQEKVTGE 510
            GR++ + ++   L+  L  T  LL+    +G +IG+ G+ +K +RE +G RI+IS     + +   R+VT++G    +  A  +I+ +   FE    +          PP  LRLV+ +S  G +IGK G+ I EIR  + A++QV  D         S ER + + G  EA     K IC ++  AY      A  +       Q ++QQ     P   T+    G+    H+   + +L        G+  G +A   +    + +PN+ IG +IG+ G+ +N+IR  SG ++ I N   G    R I ITG+ A    AQ +I  ++T E
Sbjct:   30 GRKMESKVSEGGLNVTL--TIRLLMHGKEVGSIIGKKGETVKKMREESGARINIS-----EGNCPERIVTITGPTDAIFKAFAMIAYK---FEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN-----STERAVTISGTPEAIIQCVKQICVVMLEAYTIQGQYAIPHPDLTKLHQLAMQQTPFP-PLGQTNPAFPGEKLPLHSSEEAQNL-------MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSE-RQITITGTPANISLAQYLINARLTSE 338          
BLAST of EWM23629.1 vs. NCBI_GenBank
Match: gi|194306633|ref|NP_001123613.1| (poly(rC)-binding protein 3 isoform 2 [Homo sapiens] >gi|119629728|gb|EAX09323.1| poly(rC) binding protein 3, isoform CRA_a [Homo sapiens])

HSP 1 Score: 108.997 bits (271), Expect = 1.702e-22
Identity = 96/333 (28.83%), Postives = 157/333 (47.15%), Query Frame = 0
Query:  186 GRRLSASLANLSLSSGLETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFE----SQQGGEDGEDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSLLANAYA----SASSNSPSGHQQQPSVQQASVAVPTASTSFFSGGDAGYRHTDAYSASLGGLGAEGGGEGGGEEAFDDSCEVIMRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQEKVTGE 510
            GRR+ + ++   L+  L  T  LL+    +G +IG+ G+ +K +RE +G RI+IS     + +   R+VT++G    +  A  +I+ +   FE    +          PP  LRLV+ +S  G +IGK G+ I EIR  + A++QV  D         S ER + + G  +A     K IC ++  AY      A  +       Q ++QQ     P   T+    G+    H+   + +L        G+  G +A   +    + +PN+ IG +IG+ G+ +N+IR  SG ++ I N   G    R I ITG+ A    AQ +I  ++T E
Sbjct:   30 GRRMESKVSEGGLNVTL--TIRLLMHGKEVGSIIGKKGETVKKMREESGARINIS-----EGNCPERIVTITGPTDAIFKAFAMIAYK---FEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN-----STERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAIPHPDLTKLHQLAMQQTPFP-PLGQTNPAFPGEKLPLHSSEEAQNL-------MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSE-RQITITGTPANISLAQYLINARLTSE 338          
BLAST of EWM23629.1 vs. NCBI_GenBank
Match: gi|795585087|ref|XP_011724077.1| (PREDICTED: poly(rC)-binding protein 3 isoform X12 [Macaca nemestrina] >gi|966930975|ref|XP_014988190.1| PREDICTED: poly(rC)-binding protein 3 isoform X10 [Macaca mulatta] >gi|982237194|ref|XP_015302218.1| PREDICTED: poly(rC)-binding protein 3 isoform X12 [Macaca fascicularis] >gi|1060561350|ref|XP_017811860.1| PREDICTED: poly(rC)-binding protein 3 isoform X11 [Papio anubis] >gi|1099208450|ref|XP_018873376.1| PREDICTED: poly(rC)-binding protein 3 isoform X6 [Gorilla gorilla gorilla])

HSP 1 Score: 108.997 bits (271), Expect = 1.719e-22
Identity = 96/333 (28.83%), Postives = 157/333 (47.15%), Query Frame = 0
Query:  186 GRRLSASLANLSLSSGLETTTCLLLPASRIGGVIGRGGDVIKGIRELTGTRIHISPAAEDDRDPAFRLVTVSGSVQEVCSAVELISRQAGLFE----SQQGGEDGEDYPPPGLRLVIDSSHAGQVIGKKGATINEIRTQSQARIQVLSDEESAEEGALSMERVILLIGEAEACRLAHKMICSLLANAYA----SASSNSPSGHQQQPSVQQASVAVPTASTSFFSGGDAGYRHTDAYSASLGGLGAEGGGEGGGEEAFDDSCEVIMRVPNEKIGRVIGQGGSVVNQIRAESGCRVDIENTRTGEQALRVIRITGSVAQTQAAQSMIQEKVTGE 510
            GRR+ + ++   L+  L  T  LL+    +G +IG+ G+ +K +RE +G RI+IS     + +   R+VT++G    +  A  +I+ +   FE    +          PP  LRLV+ +S  G +IGK G+ I EIR  + A++QV  D         S ER + + G  +A     K IC ++  AY      A  +       Q ++QQ     P   T+    G+    H+   + +L        G+  G +A   +    + +PN+ IG +IG+ G+ +N+IR  SG ++ I N   G    R I ITG+ A    AQ +I  ++T E
Sbjct:   30 GRRMESKVSEGGLNVTL--TIRLLMHGKEVGSIIGKKGETVKKMREESGARINIS-----EGNCPERIVTITGPTDAIFKAFAMIAYK---FEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN-----STERAVTISGTPDAIIQCVKQICVVMLEAYTIQGQYAIPHPDLTKLHQLAMQQTPFP-PLGQTNPAFPGEKLPLHSSEEAQNL-------MGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSE-RQITITGTPANISLAQYLINARLTSE 338          
The following BLAST results are available for this feature:
BLAST of EWM23629.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104780|gb|EWM23629.1|0.000e+0100.00poly -binding protein 3 [Nannochloropsis gaditana][more]
gi|585692726|ref|XP_006821506.1|1.257e-2428.84PREDICTED: poly(rC)-binding protein 3-like isoform... [more]
gi|585692718|ref|XP_006821504.1|4.667e-2429.14PREDICTED: poly(rC)-binding protein 3-like isoform... [more]
gi|291237680|ref|XP_002738761.1|1.372e-2329.39PREDICTED: poly(rC)-binding protein 3-like isoform... [more]
gi|585692707|ref|XP_006821502.1|4.732e-2329.69PREDICTED: poly(rC)-binding protein 3-like isoform... [more]
gi|1207832551|gb|OWK10062.1|6.534e-2329.91PCBP1, partial [Cervus elaphus hippelaphus][more]
gi|942048875|ref|XP_014333008.1|1.048e-2230.03PREDICTED: poly(rC)-binding protein 1 isoform X3 [... [more]
gi|674063687|ref|XP_008838677.1|1.622e-2228.83PREDICTED: poly(rC)-binding protein 3 isoform X9 [... [more]
gi|194306633|ref|NP_001123613.1|1.702e-2228.83poly(rC)-binding protein 3 isoform 2 [Homo sapiens... [more]
gi|795585087|ref|XP_011724077.1|1.719e-2228.83PREDICTED: poly(rC)-binding protein 3 isoform X12 ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7073rna7073Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications