rna7070, rna7070 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7070
Unique Name	rna7070
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4113
Alignment location	CM002470.1:376374..378490 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100137g6.27.mrna
Orig protein id	gnl\|cribi\|Naga_100137g6.27
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:376374..378490 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100137g6	gene6836	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7070	rna7070-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23625.1	cds7053	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:376374..378490+
coding sequence from alignment at CM002470.1:376374..378490+

mRNA sequence

>rna7070 ID=rna7070|Name=rna7070|organism=Nannochloropsis gaditana|type=mRNA|length=4113bp
GCAAAAACCGAGTCCAGACCTAAAGTCCGGTTCAGGGCAGCGAGATCCGA
TTAAATTTTTCAATATCTGCATTCAATCAAAATTTTTGTAGAGCGTGCGA
GGGCATAGAAGGCTTCCTACGCATTTCGGAAGGCCAAAAGAGCAAGGACT
GGGAGGCTGGGCCAGGGTCCAACTTATGAGGGACCGAGAGCTTAAGGCGA
GCATTGAGCGCCTTTGTTTTTCGTTTTTAAGGAGGAAAATTATGTTTGCA
GCTTGCAATTCGATTCAAGTTTGCTTTCATTTTAATGCTGCGTGTATCCG
TCTTGTCTCCATTGTGTGCACTGCCCAGTACTTCCACTTAATCACTTTTC
CCCCCTTCCCCCAACCCCCCCAACCCTCCCCGTTCCTCAGCTCCACGCCC
TCGAAGTCAAGCGCGGACTCCATGTCACGCCCATCCAGCGGTGCCCCACC
CGACGGGTCATTGTTATGGTTGTCCTGCGCAGAGATGAAGTCCCCAGTCG
TCTTGACATTGCCGTCACGGCTCCGCTTCTCGTCGCGCCCCGCGTAACCA
TACTGATTCGCCTCCTTGAGCACCGTAATTGTGCGGTCCATATGCTGTTG
ATTGACCTGTCACACTGTCTTTGAGACGTCGCTGGGCGCGTAAGAGCCTT
GATTTTCTTCGTGCGCAGGTCCAGACCCATTGACAACTTGGAAAAGGACA
TCCCCAGTGACCGCTAGCTGCACATGGATTTTTCCGTGTCGGCTATTTGG
ATCGGGCGAATAACCGTTTCGCATGTGCTCAACAAGGGCGACCGACGGCA
AAGTGGGCTTCAGGACCCCATCACCTTGATCGCTGAGGACAAGGGGGACC
ATACAATTAGAACGAAAGCCTTCAGGCACGTTGATCAGCAAATTCATCAC
CGTAGTGCGCTCGGGGTACCCCATATACATGTCATCAGCCAAAATGGCTT
TCAATGCCATTCTTGTATCCAGTAAGGGTGTGCCATAAAGCGGGCAAGCT
GGGCGCGTGTGGCCATCCACATGCCTTGATATGGATATGTCGGTGAGGCG
AATCGATCATGGACGCCGACAGACCATCGTGTCTTGTCGTGATGCTTCCC
ACAACCTAGCGCAAGTTATCTTTGCAGCCGTTCTTGTACGTGTAAGAAAT
CGGCATTTCGAGTTGCATCCAGCAGATTTTCGCTGGTGATGTCTAGAGGT
TGCGTATAATCCAGCATGTTGAAGTCCCCCGTCTCCACATCCACCTCTGT
TCGATAGTTGCAGCGCGTGAAGTTCAACGGCTCAAGGATTTCTGTATCCA
GTGCCCAGGAAACTATAGTCGGCCAGGACAAGCGCGTATCGTCTTCCATG
TAGAATATCGACGTATAATTGGGATGCCTTTCCACAGCCTTTTCAATCGC
CTGCCTGTGGACCCAAAGTAACGAGTGTTTATTATCGTCGTTTGACGTGG
GAGCTTGCCATAGTTGAATGGTGGGATTGCTTCCTCCAATGTATCCCTTT
GCGGCTAGAAACTCATGTAGAGCCTTCTCATTGTTTGTAACGATGAGGAC
GTCTACTTTAGTCTCGTAGGTCTGACTAAGATCGAGCATGGAAGTGAGAT
ACACGAGTTTACTCACGTTCCAATGATATGATATGACTACAAGGATATCT
TCAAGTAAGTGTGGGGCAGGGCATGGTGTTGCTGGGAGCTGGATGTGCTG
TGTCGTTTCACCCCAAGTAGAAATAGGCCCGTCCAGGACCAATACATACA
TACACAACAGCACCAAGAGACCGCAGGCGGCGGCCTTCAACATTCTTTGC
CTTGTCTGCATCACAAATTCCATTATCGTCCCTCCTGTATCCGAGTATAT
AAATGTATATTGCATGAAAAGCATCGGTCATGAATGAAACGGACACGGAT
GGGTACTACATAGTGTTGGACACGGAGAAATATGAAAAAGGAGAAAAATC
ACGCTCTACGAGTGGATGGTATCATACAAGTGGACTTGTTGACGTATCGA
AAAAAATCCCTACCCCGTCAACACATATCCTCGACTGCGCGAACCTTAAA
AACGGCTAACTGGGTCAATTCACCATAATATCGCTCAAACAAAGTTATAG
TCCGAGGACTCTCCGGGCCGTCGCCGGCTCACAGACACAGGATCCTCCCG
GCCGAAAAATAAGCTAACACCCGCCCTAAACCTGCAATGACGAGTCACGC
CACTACGTGACCATTCGCAAAGCACTCACAGTCCATTCTTGACAGGTGCT
TGAAGGGCAAGAGTGGGGTTGTGCCGGGAGAATCCTCGTGTTTGCGACTT
TTGCGTGACACTGCAACCTGTCTCTCCGAGGAAGGGGAGAACCTCAAGCC
GCATCCTCGACCCCGACCTAGACATTGGTTCCTCCTGCATTTGCCCAAAC
ATCTCTATCGTGGACAGTCACGCACAAATACGACAATCAGAGCGAATGAT
TACGCAAAATTGCCCCGGTCGCAGCGGCCCTAGGGTCGCAGCTGCCCTGG
TGATCTTCAGCTGCTTCCTCGCATCTGACTTTTCCCCCGCTCCCGTCACT
GCCTTCCTCCTAGTTTCTCCCGCGGTACCTTCCCTGCAAAAAGCCACTGG
GACGCCACAAAACCTCCTTGTTTCCCATCTTTTGCCGCCCTCCCAGCTCT
CGTCGGCGCCCATGACGGACGGGGGGACCCGGACTCGGAGCAGCATTTTC
CCTCCGCCCCTCATGTCGTTCTACGGGGAACAGCGTCGCAAACTGCAGGA
GGAAACGGAGGCCAAGCAGATGGAGTGGGCCAAGCATTTCAACGAGCTGA
TCGTCACGCAGGGCCAGGAATTGTGCGTGTGTGGCTACGAGGGGTACGTG
CGTTCGGGCAGCAAGGGAGCCGTTGCTGTCTACTGTGATGACGAAGCAGA
AGGCGAGGGGGGGGCGGAAGGCCAGGGGGGAGGCCTACATACTTGCTCCT
CCCTGTCCTTCACCACGCTCGAGGAACTTTTGGCCGACCCGCGCATGGAC
GACGGGGTGAAGGCACAGCTGAGTGAGCGCGTCACCTCCTACGAGCCCGA
TTCGGAGGTCGCCGTGCTCTTCGCCTACAACGGTCAGGTGGGCCTGAACG
TGCTGCGACCCCAGTACCCTCCCAAGTTTCTCTTTGAGACATTGAGGGGC
AAGAAGTAAGGGTGCAGCGGGAAGGGAAAGGGGAAGGGGAGGGGTCGAGG
GAACGTTGAGGCGGGAGCAATCCCTGCTACGCCGGGCATGAAAGAGGGAG
GGCAGCATCCTGAGGAGTGGAGACATTGGCAGGCCTGAGCGAGGGTGTAC
AGCATGGAAGAAAAGGGAAGAACACTGGCGCCGCTGCGCCGCTTCCTAGG
TGACAAACTCCACCATGTAAGGGGGATTGCATGAACTGAAAAATGATAGG
CAAATAATAACTCTGCAGGTAAGAAGGCATCTTGAAGTCAAGCAAGGCGC
ATGGAAGTGACAGTGTCATTGGAGCCTTATTTATGTTTAAGGAAAAAGAC
AAGCAGAAGAAAGCAGGCAGGTAAGCTCGTGCACTAGCTACCACAAGCTA
TTTATGTGGTCCTCACACAGATGTGATGGAGCACCGGACATAACAGAGGT
CGTCATTTGGAATGTCACCACGGGTATATCGCATGCTCAGCGAATAACGA
GCACACCATGCCGAGAGAAGGGGTACGAGGGTCGGAGCCGCTGCGTCACT
GTAGAGAAGTTTGAAATATAATGGGCGACAGAGCCGCGCGAAAGTTGTCT
TCCCCAAAATTTATATACGTCAATGGGTGAAATTAGAGGGTTACGTTTGT
GGCGTTGAGAGTGTGCAGTGGCCTCCCCTCACATGTTCAGTTTGATGCCC
GGCACAGGCATGTAGCTTGCCAAAGCATCGGAAGTGTGAGGCGAACTTCG
AGATTATGAATAGTCATGTCCTTCAAGAGCATCTCTAGGATAAGTTGTGC
GTTTAAACTGGCTTTTAAGAAAGAAAATGGAATAATATGACGCTGAGAGA
GGAGGCATTCCTAGAGGGCGACTCGAGAAAGCCGCTACCTCCACATGGTT
TTGTCACCCATCCACTCAAGCTTTGCGAGAATCAATGTACCCTGTCGAAG
AAAATACATATGC

protein sequence of rna7070

>rna7070-protein ID=rna7070-protein|Name=rna7070|organism=Nannochloropsis gaditana|type=polypeptide|length=472bp
MTGLNCCRESNRSFCSNNDSCNLSSTASKCRQGRRKAHLRCHVPVIGTRP
FLLLLLFPLINLVAPTHGAKLWKLPLTNPLQWLRPGGDTRHLQATVRALE
SELSRLRTLHTAHLDELRRLRAKRAEDFARFREAGKQQAAENERVREAAV
QALARAQEKEDRIEEELERERKRWRTEAETAIGQAVREAVEEERRKGKEV
VGRLESALAAARAAGANEEEEREKEDEGLRALQEAFEKERRQFKKRLGAE
RELVEVTLAREEKLQQVILKLEASNHALKAEVGQLTEGKEGKEVKVPIES
RDQVLTDRPAATVSETRAPSATSPPVPAPPQSPVTAGRIKTSNTKMVEEC
GSASAPPASVSSTVADPSLPSPNTSSSHSSSKSKSSPSGARKLKNVGKPK
ASVRKAKTKPGLGGKMETAPAKKKKATTSRPSSSSASSLPASSGSGRASA
ARPGRQPVTPTLKKGGLGAPHK

mRNA from alignment at CM002470.1:376374..378490+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7070 ID=rna7070|Name=rna7070|organism=Nannochloropsis gaditana|type=mRNA|length=2117bp|location=Sequence derived from alignment at CM002470.1:376374..378490+ (Nannochloropsis gaditana)
gaggctcGCTGCCTGAGGCTCCCGACCGCCTTCATCACCAAGGAACCCGC
CTTGATGTCATACAACGCACTTACATACTTCTCGTTCACGGTGACATTTG
CGCCCACAGGAGGAGCTTGAATTTTGAGTGGAGATCGCGTGTTTCGGGCA
GCTGCCAAGCagtttttccccctctcttttcgATACGTATATCACCGGTG
GTAAGGCTCCCGTGGAAGCAAGGCTTTTGGACGTCTTTTTGGAATGACAG
GATTAAATTGTTGCAGAGAGAGCAACAGAAGTTTTTGTAGCAATAATGAT
TCCTGTAATTTGAGCTCAACCGCGAGCAAGTGTCGGCAGGGACGCAGAAA
GGCGCACCTAAGATGTCACGTGCCCGTAATAGGCACGagacccttcctcc
tcctcctcctcttccccctcatcAATCTCGTAGCTCCTACCCATGGAGCC
AAGCTGTGGAAGCTGCCACTTACAAGTGAGTTGAGCACTATTGATCTTCT
GACGGTTAGCTCCCATGTCGGATTCTCTTGGCATGCATTTCAGCCTTGCA
TTCCCATGGTTAGGAACCTCCTGTCCGTCTTTTCGCAATCCTTTTTGTTG
TCAGCAAGGACCATCCATTTGCTTCAGGGCGCCAAGGCAGGAGAATCCTA
CCACTAGCTTGCGCCCATAGCTAATCCATCCTTATTCTCCGTTGTccact
ttttctttcctcctcccctcccagatCCCCTTCAATGGCTTCGCCCGGGC
GGGGACACGCGCCACTTACAGGCCACAGTGCGGGCCCTTGAGTCCGAGCT
GAGTCGTCTCCGAACCTTGCATACGGCACATTTAGACGAACTGCGGCGTC
TGCGAGCCAAGCGTGCGGAGGACTTCGCGCGATTTCGGGAGGCCGGGAAG
CAGCAAGCGGCCGAGAACGAGAGGGTGCGAGAAGCAGCAGTGCAGGCCTT
GGCgcgggcgcaggagaaggaggaccggatagaagaggagctggagaggg
aaaggaagaggtggaggacggaggcggagacggcgatAGGGcaggcggtg
agggaggctgtggaggaagaaagacggaaggggaaagaagtggTAGGGAG
GTTGGAAagcgccttggcggccgcaCGTGCGGCGGGTGCgaacgaagagg
aggaaagggagaaggaagatgaaggattGCGAGCCTTGCAGGAAGCCTTC
GAGAAGGAACGGAGGCAGTTTAAGAAACGCTTAGGCGCAGAAAGAGAGTT
GGTGGAGGTGACtctggccagggaggagaagctgcagCAAGTTATTCTCA
AATTAGAGGCCAGCAACCACGCACtcaaggcggaggtgggccaattgacg
gaggggaaggaggggaaggaggtgaaggtaCCCATCGAGAGCAGGGACCA
GGTGCTGACCGACAGACCTGCGGCGACAGTAAGCGAGACCCGGGCACCAA
GtgcgacctccccacccgtcccGGCGCCTCCTCAAAGCCCGGTGACAGCA
GGGCGGATTAAAACATCCAATACAAAGATGGTAGAGGAATGTGGAAGcgc
ttccgcccccccggcatCGGTATCGTCCACGGTGGCGGATCCAAGCTTGC
CCTCTCCcaacaccagcagcagccacagcagcagcaagagcaagagcagc
cCGTCGGGGGCCAGGAAATTAAAAAACGTTGGAAAGCCCAAAGCTTCTGT
CAGGAAAGCAAAAACGAAACCtggcttgggagggaagatggagacggccc
cagcgaagaaaaagaaagcgacaacctcccgcccctcgtcttcctccgcg
tcctccctccctgcctcctcagGGTCAGGACGAGCCTCCGCCGCTCGACC
GGGGCGCCAGCCCGTTACTCCCACGCTCAAGAAAGGGGGTCTGGGCGCTC
CCCACAAAtaaggagggcaggagggcaggagggatgggaaggaacgGGGG
GAAAGCACGAGAAAGGCGGGGTTCGCGGCGGGGAAAGCGATGCGATAGGG
AAAGGGCTAGACGAGGGACCTTCGCTATCGGCGAGGAGTCCGAtgggcag
gaaaggggacgCGAGCAAGACCGTGGAAGGGTAGGGCCTTTTGTAAAGCA
ATGACCTAGTCTAGGAC

Coding sequence (CDS) from alignment at CM002470.1:376374..378490+

>rna7070 ID=rna7070|Name=rna7070|organism=Nannochloropsis gaditana|type=CDS|length=2838bp|location=Sequence derived from alignment at CM002470.1:376374..378490+ (Nannochloropsis gaditana)
ATGACAGGATTAAATTGTTGCAGAGAGAGCAACAGAAGTTTTTGTAGCAA
TAATGATTCCTGTAATTTGAGCTCAACCGCGAGCAAGTGTCGGCAGGGAC
GCAGAAAGGCGCACCTAAGATGTCACGTGCCCGTAATAGGCACGagaccc
ttcctcctcctcctcctcttccccctcatcAATCTCGTAGCTCCTACCCA
TGGAGCCAAGCTGTGGAAGCTGCCACTTACAAatCCCCTTCAATGGCTTC
GCCCGGGCGGGGACACGCGCCACTTACAGGCCACAGTGCGGGCCCTTGAG
TCCGAGCTGAGTCGTCTCCGAACCTTGCATACGGCACATTTAGACGAACT
GCGGCGTCTGCGAGCCAAGCGTGCGGAGGACTTCGCGCGATTTCGGGAGG
CCGGGAAGCAGCAAGCGGCCGAGAACGAGAGGGTGCGAGAAGCAGCAGTG
CAGGCCTTGGCgcgggcgcaggagaaggaggaccggatagaagaggagct
ggagagggaaaggaagaggtggaggacggaggcggagacggcgatAGGGc
aggcggtgagggaggctgtggaggaagaaagacggaaggggaaagaagtg
gTAGGGAGGTTGGAAagcgccttggcggccgcaCGTGCGGCGGGTGCgaa
cgaagaggaggaaagggagaaggaagatgaaggattGCGAGCCTTGCAGG
AAGCCTTCGAGAAGGAACGGAGGCAGTTTAAGAAACGCTTAGGCGCAGAA
AGAGAGTTGGTGGAGGTGACtctggccagggaggagaagctgcagCAAGT
TATTCTCAAATTAGAGGCCAGCAACCACGCACtcaaggcggaggtgggcc
aattgacggaggggaaggaggggaaggaggtgaaggtaCCCATCGAGAGC
AGGGACCAGGTGCTGACCGACAGACCTGCGGCGACAGTAAGCGAGACCCG
GGCACCAAGtgcgacctccccacccgtcccGGCGCCTCCTCAAAGCCCGG
TGACAGCAGGGCGGATTAAAACATCCAATACAAAGATGGTAGAGGAATGT
GGAAGcgcttccgcccccccggcatCGGTATCGTCCACGGTGGCGGATCC
AAGCTTGCCCTCTCCcaacaccagcagcagccacagcagcagcaagagca
agagcagccCGTCGGGGGCCAGGAAATTAAAAAACGTTGGAAAGCCCAAA
GCTTCTGTCAGGAAAGCAAAAACGAAACCtggcttgggagggaagatgga
gacggccccagcgaagaaaaagaaagcgacaacctcccgcccctcgtctt
cctccgcgtcctccctccctgcctcctcagGGTCAGGACGAGCCTCCGCC
GCTCGACCGGGGCGCCAGCCCGTTACTCCCACGCTCAAGAAAGGGGGTCT
GGGCGCTCCCCACAAAtaaATGACAGGATTAAATTGTTGCAGAGAGAGCA
ACAGAAGTTTTTGTAGCAATAATGATTCCTGTAATTTGAGCTCAACCGCG
AGCAAGTGTCGGCAGGGACGCAGAAAGGCGCACCTAAGATGTCACGTGCC
CGTAATAGGCACGagacccttcctcctcctcctcctcttccccctcatcA
ATCTCGTAGCTCCTACCCATGGAGCCAAGCTGTGGAAGCTGCCACTTACA
AatCCCCTTCAATGGCTTCGCCCGGGCGGGGACACGCGCCACTTACAGGC
CACAGTGCGGGCCCTTGAGTCCGAGCTGAGTCGTCTCCGAACCTTGCATA
CGGCACATTTAGACGAACTGCGGCGTCTGCGAGCCAAGCGTGCGGAGGAC
TTCGCGCGATTTCGGGAGGCCGGGAAGCAGCAAGCGGCCGAGAACGAGAG
GGTGCGAGAAGCAGCAGTGCAGGCCTTGGCgcgggcgcaggagaaggagg
accggatagaagaggagctggagagggaaaggaagaggtggaggacggag
gcggagacggcgatAGGGcaggcggtgagggaggctgtggaggaagaaag
acggaaggggaaagaagtggTAGGGAGGTTGGAAagcgccttggcggccg
caCGTGCGGCGGGTGCgaacgaagaggaggaaagggagaaggaagatgaa
ggattGCGAGCCTTGCAGGAAGCCTTCGAGAAGGAACGGAGGCAGTTTAA
GAAACGCTTAGGCGCAGAAAGAGAGTTGGTGGAGGTGACtctggccaggg
aggagaagctgcagCAAGTTATTCTCAAATTAGAGGCCAGCAACCACGCA
Ctcaaggcggaggtgggccaattgacggaggggaaggaggggaaggaggt
gaaggtaCCCATCGAGAGCAGGGACCAGGTGCTGACCGACAGACCTGCGG
CGACAGTAAGCGAGACCCGGGCACCAAGtgcgacctccccacccgtcccG
GCGCCTCCTCAAAGCCCGGTGACAGCAGGGCGGATTAAAACATCCAATAC
AAAGATGGTAGAGGAATGTGGAAGcgcttccgcccccccggcatCGGTAT
CGTCCACGGTGGCGGATCCAAGCTTGCCCTCTCCcaacaccagcagcagc
cacagcagcagcaagagcaagagcagccCGTCGGGGGCCAGGAAATTAAA
AAACGTTGGAAAGCCCAAAGCTTCTGTCAGGAAAGCAAAAACGAAACCtg
gcttgggagggaagatggagacggccccagcgaagaaaaagaaagcgaca
acctcccgcccctcgtcttcctccgcgtcctccctccctgcctcctcagG
GTCAGGACGAGCCTCCGCCGCTCGACCGGGGCGCCAGCCCGTTACTCCCA
CGCTCAAGAAAGGGGGTCTGGGCGCTCCCCACAAAtaa

Synonyms

Publications