rna707, rna707 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna707
Unique Name	rna707
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2338
Alignment location	CM002456.1:225162..227760 +

Link to JBrowse

Properties


Property Name	Value
Product	pab-dependent poly -specific ribonuclease subunit 2
Orig transcript id	gnl\|cribi\|Naga_100200g3.10020.mrna
Orig protein id	gnl\|cribi\|Naga_100200g3.10020
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:225162..227760 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100200g3	gene678	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna707	rna707-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29971.1	cds707	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:225162..227760+
coding sequence from alignment at CM002456.1:225162..227760+

mRNA sequence

>rna707 ID=rna707|Name=rna707|organism=Nannochloropsis gaditana|type=mRNA|length=2338bp
TTTCAGACAGGGCCCGCTGACGCACACGCTCCTTCAAAGTTCAGCTTCCG
TTCGACCCGACCTCAAACCCACACTTTTTGCATAAAAACATACACACAGA
GCGTTGGACCCAAGAAGAAGGAGGGTGATGGCGCTCAGGAAAAGGATCGC
AGGCCTGGTGGCGGTCATCACACTTGTCCAGTCCACTTACTCCATCGCCA
CTGCGTTCCTCCTACCTCACACGACGCGTGTTTCACAGCCCCATAGATCG
ACAAGTCCAGCTTCCACAACACGGGCGCCCGCTTCCACGCTTCCTGTCGA
ACAAGTTCGTGGCTCAGATAAGGAAAAGCTTCTGGACCTGTCGGTGTTGG
ATCGTGCGATGTCAGGCCCCCCTGCAAATCTGAGGGTGAAGGACACGAGC
ACCGAGCGACTGCGCGTGGGTATTATAGGTGGAGGTCTCGGTGGACTGAT
CACAGCGATGGATTTGTCCGAGGCAGGGCACGAGGTTGAGATTTTCGAGG
CGCGTCGTTTTGCGGGGGGGAAAGTAGGGTCGTGGGTGGACAAGGACGGC
AACCACATCGAGATGGGACTGCACGTCTTCTTTGGTTGCTACTACAATCT
TTTTGGGATCATGAAACGGTTGGGGGTCTTTGAGTCCTCTCTTCGCCTCA
AAGATCACACCCATTCCTTCATTAATAAGGGCGGTAGGGTCGGCGAGCTC
GATTTTCGCTTCGGCGGCATCGGCGCCCCTGTGAACGGCTTGAAAGCTTT
TGCCACCACCTCCCAACTGGAAATCGGGGACAAGATTGCCAACGCCGTGG
CCTTGGCGACCAGCCCCGTCGTGAAAGCCCTCTTCGACTTCGACGCGGCC
ATGGAGGATGTCCGGGCCTTGGACGGCATCTCTTTCTCGGAATGGTTCCT
GAGGAAAGGGGGGAGCCGGGGCAGCATGACGCGGATGTGGGACCCGATTG
CGTACGCCTTGGGGTTTATCGATTGCGACCACATCTCGGCCCGGTGCATG
CTGACGATCTTCCAGCTTTTTGCCGTGAGGTCGGAGGCCTCGGTATTGCG
CATGTGTGAGGGCTCCCCCAACACGTATCTACACGAACCCATTTTGGCGT
ATTTGAAAGCGCGGGGGGTGACCTTGCACCTGAACAGCCGCATTCAGGAC
TTGGTCTACGACACGGACGCCAGCACAGGGGCACCCTCCCGTGTGAAGGG
CCTGGTATTATCAGGGAAAGCCAACACGGAGGACGGGAAGGAGGCCGGGG
CGGCGGGCGGGGTTGGGGCCGCGGGCGAGCAACGCTTGTTTGATTGCGTG
GTTGCTGCGTGCGACGTGCCTGGGATCCAAAAATTGCTGCCGGAGTCCTT
CCGTAAAATCCAGGAGTTCGACAACATCTACCGCCTAGAAGCCGTTCCCG
TCACCACGGTCCAACTCCGATTCAACGGCTGGGTAACGGAACTCAACGAC
CCCGTGCGGATGAAAGAAATCAATGGGGACTTTTCCAACGGGCGCGCTCC
GGGCCTGGACAACCTCCTCTACTCAGCGGACGCGGAATTTTCTTGCTTTG
CCGACCTGGCGTTGACCAGCCCGGCGGAATATTACAAGGAAGGGGAAGGG
TCGTTGTTGCAATGCGTCCTGACCCCGGGAGACAAATGGATGCCGGTCTC
GACGGAGAAGATCGCGGAGGCCACGTTAAAACAAGTTTTGGATCTGTTCC
CGTCGGCGCGTGGCTTGGAGTGCACCTGGACCAACGTGGTGAAGCTCGGC
CAGTCCCTCTACCGCGAGGCCCCCGGGATGGACGTATACCGACCCAAACA
GAAGAGTCCCGTGGAGAACTTCTACCTGGCTGGCTCCTATACATATCAGG
ACTACATTGATTCCATGGAAGGGGCAACGAAGAGTGGGCTCTTGTGTGCA
GATCAGATACTGAGAGACGCCAAGACCATCAAGGCCAGGGCCAGCTCGAA
GGAGGATATGATTAAGGAGGCAGCGGTCATGTCCGCGTGAGGAGGAGTCA
GAGAAAAAAATGAGAAGGACGGGGATTGAACAGTAGGTAGTAGTGTCATG
ATTCATGATGCAGAGAGATATTTAGGGATTGGCTGTGCTTGAACGATAGA
ATATCACTTACACAAGCTAGCATAAGCCAAACTGAGGAGTGACGCGAAAA
CACGACATTCCACATAAAGAGATTACTCGACGCTTTGCTAGCAGTCATGC
AGATCGAATCCAACATTCCCTATCCCTCTCTGAGCCTGATCAAGTTGCCG
CGAACAGAAACTGCTCTCGATGTAGAAAATGGAAAGAACTCGAAAAACCT
GACGCTCGTCTTTGGTGAGAGCCAACGTAAGTCTTATC

protein sequence of rna707

>rna707-protein ID=rna707-protein|Name=rna707|organism=Nannochloropsis gaditana|type=polypeptide|length=644bp
MSASFFPPGHQMHMESPPDYEDDQVSTIQGHGTYMETHRVPSDGYPITAL
AFDPIEELLWVGTGNGRLSALAQPGMQKHVSVRAHPLLSPVRQIRCFGEG
VVSISGRQVQMHNKNCLALCAAPASAMLGVDERGQEGDIESVNSRPKGGG
HGRPALGKKEEDENVTGTVRPGQEEFTCGALNVPLGHHHHPMAAYVGEHV
TVGGSGTHVWELDLATGLRVVRTLEVASPSTCMESNRAMVIGGADGRLRF
LDGSLRSGQAVERDLEAFTGPVTSMCTWNDMVAATGTQGRSLNPYDRSGR
APTRLLPDPLIKLFDLRMLRQSLPLSFAPALVAPSLLTLLPHTAQARLVV
GAATTGQFLLCDPFNVTAADTAFFQVPNHHTGGPSPMACVAASPSGEMLA
LGTPDGLVISYTNSPEAVVNRPPVPLEILPSTPPPPPISIAPNDPTPASH
FLFRPTHLAFPPHPLLPPASSFATTPAVLSSLPVRVPPARVINPELYTKM
SVQDFLGYVPNRYYQYPAHSLLYGSAGKEAYRVVDPRRKEDGAEAGRRED
PGEDVGGKEGGAGREDTGEDARPPRYRRVQIDFSVRGLDGFEFGRYNRTP
LVGLENVLPNTYTNAILQMMFFVPEMKAAVCRHQYLRFRASESD

mRNA from alignment at CM002456.1:225162..227760+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna707 ID=rna707|Name=rna707|organism=Nannochloropsis gaditana|type=mRNA|length=2599bp|location=Sequence derived from alignment at CM002456.1:225162..227760+ (Nannochloropsis gaditana)
ATGAgtgcctcttttttccctccaggGCACCAAATGCACATGGAGTCGCC
TCCAGATTACGAGGATGACCAAGTATCGACCATACAAGGCCATGGGACTT
ACATGGAAACACACAGAGTACCGAGTGATGGCTATCCTATCACCGCGCTG
GCATTTGATCCCATAGAAGAGCTCCTTTGGGTGGGAACGGGCAACGGGCG
CCTTTCTGCCCTGGCTCAGCCTGGCATGCAAAAGCACGTCTCTGTTCGAG
CGCATCCACTTCTTTCACCGGTGCGACAGATTCGTTGCTttggggagggc
gtggtttCCATATCGGGTAGGCAGGTCCAGATGCACAACAAGAATTGTTT
AGCGTTGTGCGCTGCCCCTGCCTCGGCCATGCTCGGAGTTGACgaaagag
gacaagaaggggaCATCGAAAGCGTCAACTCAAGGCCCAAAGGAGGTGGC
CACGGTCGGCCGGCattgggaaagaaggaggaagacgaaaaTGTGACCGG
TACGGTCCGCCCAGGCCAAGAAGAGTTCACCTGCGGGGCCTTGAACGTCC
CCCTcgggcaccaccaccaccccatGGCCGCGTACGTTGGGGAGCACGTG
ACGGTGGGCGGGAGCGGCACGCATGTGTGGGAGCTCGACCTTGCGACGGG
TCTCCGTGTCGTCCGGACGTTGGAGGTAGCCAGTCCCTCCACGTGCATGG
AGAGCAACCGGGCCATGGTCATCGGGGGCGcggacggccgcctccgcttt
ttGGACGGGTCCTTGCGCTCggggcaggcggtggagagggaTTTGGAAGC
CTTCACGGGCCCCGTGACCAGCATGTGCACCTGGAACGACATGgtggcgg
cgacggggaCGCAGGGGAGGTCGCTGAACCCCTACGACCGGTCCGGGCGG
GCGCCtacccgccttctccccgaCCCCCTCATCAAGCTCTTTGACCTCCG
CATGCTGCGTCAGagcctgcccctctccttcgcccccgccttggtcgcgc
cgtccctcctgactctcctccctcatacGGCCCAGGCCCGACTCGTGGTG
GGAGCCGCCACCACGGGTCAATTCCTTCTTTGCGACCCCTTCAACGTCAC
GGCCGCCGAcaccgccttcttccaaGTCCCAAACCACCACACGGGCGGGC
CGTCCCCCATGGCATGCgtggcggcctcccccaGTGGGGAAATGCTCGCT
TTGGGCACCCCCGATGGCCTCGTCATCTCTTACACGAATTCCCCCGAGGC
GGTGGTGAACCGCCCCCCCGTTCCCTTGGagatcctcccttccacccctc
ccccccccccgatcTCCATCGCCCCCAATGACCCCACTCCTGCCtcccat
ttcctcttccgaCCAACCCAtcttgccttccccccccaccccctcctacc
cccgGCGTCATCCTTCgccaccacccccgccgttctctcctccctccccg
tccgcgtgccccccgcccgcgtcaTCAATCCGGAGCTGTACACGAAAATG
AGCGTCCAGGATTTTCTGGGCTATGTCCCGAACCGATACTACCAGTACCC
CGCACACTCGTTGTTGTACGGCTCTGCGGGGAAAGAAGCTTACCGAGTGG
TAGACCCCCGACGGAAAGAAGACGGTGCCGAGGCCGGCAGGCGTGAGGAC
Ccgggcgaggacgtgggagggaaggaggggggggcagggagggaggacac
gggggaggacgcccgGCCCCCACGCTACCGGCGGGTGCAGATCGACTTCT
CTGTCCGGGGGCTGGACGGCTTTGAATTTGGGCGGTACAACCGAACGCCT
CTGGTCGGTTTGGAGAATGTCTTGCCCAACACGTACACGAACGCGATTTT
GCAGATGATGTTTTTCGTGCCCGAGATGAAGGCGGCGGTCTGCCGGCACC
AgtacctccgggtatgttGGGAAGACGAGAAGAGTATTGTCTGCGAGatg
gccttcctcttccacatGCTCGAAACCGCTTCGGCCCATGTTTCCTTCCA
CGCGGGCAAGTCGTCGGCCCCCTCCCGAACCTCGACGACGGATGCCAAGA
AGACCCTCCCACCTGCCctggcccccgccctccctcccgccctccctccc
tgccagaGCAGCAATTTCCTCCGGGTCTTCCGCCACGTcccggaggtggt
ggccttgGACCTTCTAGAAGCGTCTACGGCCACGCCGGTCCACCAGCGAG
CAGAAGGCGCGCACCGGTTTTTTCTCTCCCAATTGCACGGAATGGAGGCG
CAAgaacgggagaagggggtggcgaatgagggaggggcaggggctgaggg
cgggaaggaggggtcggtggagggagggcacgagggagggcgggaggaga
gcgtgGTGGATGCCTTGTACGGCTACACCGTCCACACCACCAAcactttc
ctccaccctcccggccttccccctgtcACGCTCACCACTCGCTCTTTTAT
CTTGGAACTCGTCCATCCACGCAGCCTCGCCCGCGGAGCCGGtggctccc
cttcctcctccccttcctccctcccgccccctgccacgtcctcgccgccc
cccctctccctgggcACCGAAGCAGTTCCGAGCAAGCGAGAGCGATTGA

Coding sequence (CDS) from alignment at CM002456.1:225162..227760+

>rna707 ID=rna707|Name=rna707|organism=Nannochloropsis gaditana|type=CDS|length=3870bp|location=Sequence derived from alignment at CM002456.1:225162..227760+ (Nannochloropsis gaditana)
ATGAgtgcctcttttttccctccaggGCACCAAATGCACATGGAGTCGCC
TCCAGATTACGAGGATGACCAAGTATCGACCATACAAGGCCATGGGACTT
ACATGGAAACACACAGAGTACCGAGTGATGGCTATCCTATCACCGCGCTG
GCATTTGATCCCATAGAAGAGCTCCTTTGGGTGGGAACGGGCAACGGGCG
CCTTTCTGCCCTGGCTCAGCCTGGCATGCAAAAGCACGTCTCTGTTCGAG
CGCATCCACTTCTTTCACCGGTGCGACAGATTCGTTGCTttggggagggc
gtggtttCCATATCGGGTAGGCAGGTCCAGATGCACAACAAGAATTGTTT
AGCGTTGTGCGCTGCCCCTGCCTCGGCCATGCTCGGAGTTGACgaaagag
gacaagaaggggaCATCGAAAGCGTCAACTCAAGGCCCAAAGGAGGTGGC
CACGGTCGGCCGGCattgggaaagaaggaggaagacgaaaaTGTGACCGG
TACGGTCCGCCCAGGCCAAGAAGAGTTCACCTGCGGGGCCTTGAACGTCC
CCCTcgggcaccaccaccaccccatGGCCGCGTACGTTGGGGAGCACGTG
ACGGTGGGCGGGAGCGGCACGCATGTGTGGGAGCTCGACCTTGCGACGGG
TCTCCGTGTCGTCCGGACGTTGGAGGTAGCCAGTCCCTCCACGTGCATGG
AGAGCAACCGGGCCATGGTCATCGGGGGCGcggacggccgcctccgcttt
ttGGACGGGTCCTTGCGCTCggggcaggcggtggagagggaTTTGGAAGC
CTTCACGGGCCCCGTGACCAGCATGTGCACCTGGAACGACATGgtggcgg
cgacggggaCGCAGGGGAGGTCGCTGAACCCCTACGACCGGTCCGGGCGG
GCGCCtacccgccttctccccgaCCCCCTCATCAAGCTCTTTGACCTCCG
CATGCTGCGTCAGagcctgcccctctccttcgcccccgccttggtcgcgc
cgtccctcctgactctcctccctcatacGGCCCAGGCCCGACTCGTGGTG
GGAGCCGCCACCACGGGTCAATTCCTTCTTTGCGACCCCTTCAACGTCAC
GGCCGCCGAcaccgccttcttccaaGTCCCAAACCACCACACGGGCGGGC
CGTCCCCCATGGCATGCgtggcggcctcccccaGTGGGGAAATGCTCGCT
TTGGGCACCCCCGATGGCCTCGTCATCTCTTACACGAATTCCCCCGAGGC
GGTGGTGAACCGCCCCCCCGTTCCCTTGGagatcctcccttccacccctc
ccccccccccgatcTCCATCGCCCCCAATGACCCCACTCCTGCCtcccat
ttcctcttccgaCCAACCCAtcttgccttccccccccaccccctcctacc
cccgGCGTCATCCTTCgccaccacccccgccgttctctcctccctccccg
tccgcgtgccccccgcccgcgtcaTCAATCCGGAGCTGTACACGAAAATG
AGCGTCCAGGATTTTCTGGGCTATGTCCCGAACCGATACTACCAGTACCC
CGCACACTCGTTGTTGTACGGCTCTGCGGGGAAAGAAGCTTACCGAGTGG
TAGACCCCCGACGGAAAGAAGACGGTGCCGAGGCCGGCAGGCGTGAGGAC
Ccgggcgaggacgtgggagggaaggaggggggggcagggagggaggacac
gggggaggacgcccgGCCCCCACGCTACCGGCGGGTGCAGATCGACTTCT
CTGTCCGGGGGCTGGACGGCTTTGAATTTGGGCGGTACAACCGAACGCCT
CTGGTCGGTTTGGAGAATGTCTTGCCCAACACGTACACGAACGCGATTTT
GCAGATGATGTTTTTCGTGCCCGAGATGAAGGCGGCGGTCTGCCGGCACC
AgtacctccggTTCCGAGCAAGCGAGAGCGATTGAATGAgtgcctctttt
ttccctccaggGCACCAAATGCACATGGAGTCGCCTCCAGATTACGAGGA
TGACCAAGTATCGACCATACAAGGCCATGGGACTTACATGGAAACACACA
GAGTACCGAGTGATGGCTATCCTATCACCGCGCTGGCATTTGATCCCATA
GAAGAGCTCCTTTGGGTGGGAACGGGCAACGGGCGCCTTTCTGCCCTGGC
TCAGCCTGGCATGCAAAAGCACGTCTCTGTTCGAGCGCATCCACTTCTTT
CACCGGTGCGACAGATTCGTTGCTttggggagggcgtggtttCCATATCG
GGTAGGCAGGTCCAGATGCACAACAAGAATTGTTTAGCGTTGTGCGCTGC
CCCTGCCTCGGCCATGCTCGGAGTTGACgaaagaggacaagaaggggaCA
TCGAAAGCGTCAACTCAAGGCCCAAAGGAGGTGGCCACGGTCGGCCGGCa
ttgggaaagaaggaggaagacgaaaaTGTGACCGGTACGGTCCGCCCAGG
CCAAGAAGAGTTCACCTGCGGGGCCTTGAACGTCCCCCTcgggcaccacc
accaccccatGGCCGCGTACGTTGGGGAGCACGTGACGGTGGGCGGGAGC
GGCACGCATGTGTGGGAGCTCGACCTTGCGACGGGTCTCCGTGTCGTCCG
GACGTTGGAGGTAGCCAGTCCCTCCACGTGCATGGAGAGCAACCGGGCCA
TGGTCATCGGGGGCGcggacggccgcctccgctttttGGACGGGTCCTTG
CGCTCggggcaggcggtggagagggaTTTGGAAGCCTTCACGGGCCCCGT
GACCAGCATGTGCACCTGGAACGACATGgtggcggcgacggggaCGCAGG
GGAGGTCGCTGAACCCCTACGACCGGTCCGGGCGGGCGCCtacccgcctt
ctccccgaCCCCCTCATCAAGCTCTTTGACCTCCGCATGCTGCGTCAGag
cctgcccctctccttcgcccccgccttggtcgcgccgtccctcctgactc
tcctccctcatacGGCCCAGGCCCGACTCGTGGTGGGAGCCGCCACCACG
GGTCAATTCCTTCTTTGCGACCCCTTCAACGTCACGGCCGCCGAcaccgc
cttcttccaaGTCCCAAACCACCACACGGGCGGGCCGTCCCCCATGGCAT
GCgtggcggcctcccccaGTGGGGAAATGCTCGCTTTGGGCACCCCCGAT
GGCCTCGTCATCTCTTACACGAATTCCCCCGAGGCGGTGGTGAACCGCCC
CCCCGTTCCCTTGGagatcctcccttccacccctcccccccccccgatcT
CCATCGCCCCCAATGACCCCACTCCTGCCtcccatttcctcttccgaCCA
ACCCAtcttgccttccccccccaccccctcctacccccgGCGTCATCCTT
Cgccaccacccccgccgttctctcctccctccccgtccgcgtgccccccg
cccgcgtcaTCAATCCGGAGCTGTACACGAAAATGAGCGTCCAGGATTTT
CTGGGCTATGTCCCGAACCGATACTACCAGTACCCCGCACACTCGTTGTT
GTACGGCTCTGCGGGGAAAGAAGCTTACCGAGTGGTAGACCCCCGACGGA
AAGAAGACGGTGCCGAGGCCGGCAGGCGTGAGGACCcgggcgaggacgtg
ggagggaaggaggggggggcagggagggaggacacgggggaggacgcccg
GCCCCCACGCTACCGGCGGGTGCAGATCGACTTCTCTGTCCGGGGGCTGG
ACGGCTTTGAATTTGGGCGGTACAACCGAACGCCTCTGGTCGGTTTGGAG
AATGTCTTGCCCAACACGTACACGAACGCGATTTTGCAGATGATGTTTTT
CGTGCCCGAGATGAAGGCGGCGGTCTGCCGGCACCAgtacctccggTTCC
GAGCAAGCGAGAGCGATTGA

Synonyms

Publications