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Properties
| Property Name | Value |
|---|
| Product | trna pseudouridine synthase 3 |
| Orig transcript id | gnl|cribi|Naga_100137g19.23.mrna |
| Orig protein id | gnl|cribi|Naga_100137g19.23 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:353681..356243 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7062 ID=rna7062|Name=rna7062|organism=Nannochloropsis gaditana|type=mRNA|length=1220bp
AGGTATATGACCATGTTGCCAGGGTCAGCAGTTGCCACTGCCAAGAGCGT
TTACATGTCGGCGGCTCGAGGGCGGATCTCGACACAATTTCCTATCGTTG
CTTCGCCCCTGTCTTCTATGCCGTCCTTGACGATTTTCGATAGGGTTGGA
AAGAAACGCCAACGGTCAAGGGCGGCAACAAAGCCAGATTGGGCCGAATA
CGAGTACCTACGGGCAGAAGTGGCCAAAAGACTAGTTGACCGTTTGGAAG
ACATCATGCGGGATTTCCCTCAGGCCTTGGAGCTGGGAGCGTATGGTCCG
CATATTGCCCAGGAGGTCAACGCGGTGAAGGGGCTCAATGGAAAGGGCGG
CGCCGGTGGAATCGAGACGCTGGTCAGGTGCGGCTTGACCGAGGAGGGCC
TTCTACCTGCCAGCATGACAAGCAAGTCAGTAACGCAAGAAGGGGATGCT
AAAATTCTCAACTTGGTGGGGGACGAGGAGCACCTACCTTTTTCTCCGGC
GTCGTTCGACCTGATCGTGAGTAATCTGAGCTTACACTGGATCAACGACC
TCCCCGGCGCCATGAACCAAGCCCGCGAGGTTCTGAAGCCTGACGGTGTT
TTTCTAGCCTCCATGTTCGGCGGCAACACCTTGAAGGAACTACGGGTGGC
TTTCCAACTTGCGGAACAGGAGCGGGAGGGAGGCATCTCTCCCCACGTCT
CTCCTTCGGCGCACGTGGCCGACTGCGGGAGTTTGCTCCAAGCCGCAGGC
TTTGCCCTACCGACGGTGGACGTGGATACAATCACGGTAAGCTACCCGGA
TGCCTTGGTCTTGATGGAGCACCTGCAGGGGATGGGGGAGTCCAGCGCCA
TCCTCACCAGGCGCCCCTACGTGAGCCGCGAGACCTTCCTGGCGGCGGCG
GCGATCTATCAGGTAGGACGGGGAGCTACAGCAAGCACCGACGTCATCAT
TCTCTCCAAGACGCTCAGTATTCGTCCCCCCCCCCCCCCCAGGACCTCTA
CGCGGAGGCGGACGGCTCCGTGCCCGCGACCTTCCAGGTGGTCTATATGA
TTGGCTGGGCCCCGCACGATTCCCAGCCCCGGCCCAAGAAACGCGGCTCG
GGACGAGTGAGTATGAAAACCTTGCAGAAGGGAGCGTCGGATGGGAATGG
AGGGGGGCCTGCGCGTTGAAGGGGGGAGGGAAGGGAGGGGGAAAGGGTGT
GGAAAGGAAAAGAAGACACG back to topprotein sequence of rna7062 >rna7062-protein ID=rna7062-protein|Name=rna7062|organism=Nannochloropsis gaditana|type=polypeptide|length=764bp
MPSPCINIKSRAFTAQGCMKTAQGHVEGPAPESCTGLDQDAHLPFQSPSP
PLPQDLTRSQLYSMLRHIQEQTDGKALVGHALHHILSLATGSTPHPPPKK
QKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMAC
IKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPA
CASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVTGGFFKEEAEDPA
LDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDG
FSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVTTV
QSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFL
WHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLH
DCHFERLRFHHQPSALFRLWTELRLAWGQTAVRLARLQDQMGYVGELAVR
KAALDGWVDAELGMGRFQGSRFQKQEKKKKGKRREAGGGEGAGTAGGGGG
EGGSKTCEAMNNESGSVHGVSDRGGEAEDEKSVGKKEDTVLMTWRDALAY
LSAQGIVPDLEVSKKKKGIWTPYVPLKDRPLGKTYEEAVLGMGTKKRELY
EQAQRKRKAAETKGGMEAFFHNMRGTSPGPSLSSSGRKSPHDKNVINDDV
SAAKRKPHRTSDSELNRLNHLAASSSHDGANINSQARSENDLLSHKGLGH
GGKSAVQHATAWPN back to topmRNA from alignment at CM002470.1:353681..356243- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7062 ID=rna7062|Name=rna7062|organism=Nannochloropsis gaditana|type=mRNA|length=2563bp|location=Sequence derived from alignment at CM002470.1:353681..356243- (Nannochloropsis gaditana)
GCCTAAGTCATATACCCGGACAAAACATGCCTTCCCCCTGTATAAATATT
AAGTCTCGCGCCTTCACCGCACAGGGGTGCATGAAGACCGCCCAGGGGCA
CGTGGAGGGCCCAGCGCCTGAGTCTTGCACTGGACTGGATCAAGATGCTC
ATCTTCCTTTTCAGTCACCCTCGCCTCCGCTTCCACAAGATTTGACTCGT
AGTCAGCTCTATTCGATGTTACGACACATACAAGAGCAGACAGACGGAAA
AGGTACGCTGTACTTACCTCGTCTTTTATTCTAATTGGATCTTACCCCCC
CAATTCAATCACCTCCCCGCTCCACTCGTCTCGGCTGTAACGTTTGCTTT
CGCAGCTATGATAAATTGTAATATCTGATTGCCCCCCTGTTCAATGCTAT
GCTGTAATACTGACATTTCGTGGGCGTCCGTGCCCGTCACAGCACTTGTT
GGTCACGCGCTCCACCACATCCTGTCCCTGGCGACTGGATCGACCCCACA
CCCACCGCCCAAGAAGCAGAAGTCGGCCAGGGGGTTCGACTTCAGTCGAT
TTGGGACCCGTCACATTGCTATACAGTTCAGCTACGAGGGCGGTCCCTAC
AACGGCCTGACCTCCAACGGGCCCAACGAGGAAGAGTCGGTGGAGGCGCA
GCTCCTGATGGCGTGCATCAAGACCAAGCTCATCCCGGACAGGGCCTCCG
CCTGCGTCTCTCGCTGTGGACGAACAGACAGAGGTGTCAATGCGCTGCGG
CAGGTCGTGGGTTTACGCGTGCGTTCCATCTTGTCGACGCCCTCTACCTC
TCCCTGGCCCCCCGCCTGTGCCTCGTCCTCGAGCCCGTGCGCAAGCCCAG
ATCAGCATGCACCCAGAGTCATTCCCGATGCGAATGGCGACGCTGATTCT
TACAATGAGCATGCAGAGACCACAGTCACAGGCGGCTTCTTCAAAGAGGA
AGCGGAGGATCCGGCTCTGGACCCAGCCGCCCTCGCTGCCGGGGGGAACA
TTTGGTCGGCCTCGTACGACACCCGCACGGAGGGAGAGCTCGATTACACA
ACGCTTCTCAACCGCGTCCTTCCCTTGGATATCCGCGTGCTGGGCTGGGC
GCCTGTCCCTGACGGGTTTTCCGCCCGCTTTTGCTGCTCCTACCGCACCT
ACCGATATTTCTTCGACGGCGACGGCTACGACTTAGGCCGCATGTCCGCC
GCTGCCGGGCGTTTGGTGGGAGAGCACGACTTTCGAAACTTCTGTAAAAT
GGACGTGACGACGGTGCAGAGCTTTGTGCGGGTGGTGCGGGAGGCTACGG
TCTTGACGGCGGGGGAGTGGGGATGGGCGTTGGACTCCAGGGGACCCATG
CCGGGCCCATCGTCCACGCCCGCCCGCCGCGTGTGCTGCCTGCAGATCCA
AGGCCAAGCTTTCCTCTGGCACATGGTCCGGTGCATCATGGCCGTGCTCT
TCGCCGTGGGCCGGGGCCAGGAGGAGGTGGGCGTGGTGGACGACCTCCTC
GACGTCTCCCGCTACCCCGGGAAGCCTCTCTACGCGCTCGCCTCCGAGCA
CGCCCTGGTCCTCCACGACTGCCACTTTGAGCGCCTGCGCTTCCACCACC
AACCCTCGGCGCTCTTCCGGCTTTGGACAGAGCTGCGGCTGGCTTGGGGC
CAGACGGCCGTCCGTCTGGCCAGGCTGCAGGATCAGATGGGTTACGTGGG
GGAGCTGGCTGTGCGTAAAGCCGCCCTGGACGGGTGGGTGGACGCAGAGC
TAGGCATGGGTCGCTTCCAGGGGAGTCGATTCCAGAAACAGGAAAAGAAG
AAAAAGGGCAAGAGGAGAGAGGCGGGGGGAGGGGAGGGAGCGGGGACGGC
GGGAGGGGGGGGAGGAGAGGGAGGGAGTAAGACTTGTGAGGCGATGAACA
ACGAATCCGGCTCGGTCCATGGGGTGAGTGACAGAGGAGGCGAGGCGGAA
GACGAGAAGAGCGTCGGAAAGAAGGAAGATACCGTGCTGATGACGTGGCG
GGATGCGCTGGCCTACCTCTCGGCGCAGGGAATCGTTCCCGACCTGGAGG
TGAGCAAGAAGAAAAAGGGCATCTGGACGCCCTACGTGCCCCTGAAAGAT
CGTCCTCTGGGCAAAACCTACGAAGAGGCCGTGTTGGGGATGGGGACTAA
GAAACGGGAGCTCTACGAGCAGGCGCAACGGAAGAGAAAGGCTGCCGAGA
CGAAGGGAGGCATGGAGGCATTTTTCCACAACATGCGAGGGACCTCCCCC
GGCCCCTCGCTCAGTAGTAGCGGACGCAAAAGCCCTCATGACAAGAACGT
GATCAATGATGACGTGAGCGCGGCCAAGAGGAAACCTCACCGCACCAGTG
ATAGCGAGCTCAACCGTCTCAATCATCTTGCCGCCTCGAGCTCTCACGAT
GGAGCTAATATCAATAGTCAAGCGCGATCGGAAAATGATTTACTCAGTCA
TAAGGGCTTGGGACATGGAGGTAAAAGTGCAGTGCAGCATGCGACAGCAT
GGCCAAATTAGAAGTCCAATTCATACAGAAACAGCTAAAGTATTTTTACG
CAGAATCTGATGT back to topCoding sequence (CDS) from alignment at CM002470.1:353681..356243- >rna7062 ID=rna7062|Name=rna7062|organism=Nannochloropsis gaditana|type=CDS|length=4590bp|location=Sequence derived from alignment at CM002470.1:353681..356243- (Nannochloropsis gaditana)
CACTTGTTGGTCACGCGCTCCACCACATCCTGTCCCTGGCGACTGGATCG
ACCCCACACCCACCGCCCAAGAAGCAGAAGTCGGCCAGGGGGTTCGACTT
CAGTCGATTTGGGACCCGTCACATTGCTATACAGTTCAGCTACGAGGGCG
GTCCCTACAACGGCCTGACCTCCAACGGGCCCAACGAGGAAGAGTCGGTG
GAGGCGCAGCTCCTGATGGCGTGCATCAAGACCAAGCTCATCCCGGACAG
GGCCTCCGCCTGCGTCTCTCGCTGTGGACGAACAGACAGAGGTGTCAATG
CGCTGCGGCAGGTCGTGGGTTTACGCGTGCGTTCCATCTTGTCGACGCCC
TCTACCTCTCCCTGGCCCCCCGCCTGTGCCTCGTCCTCGAGCCCGTGCGC
AAGCCCAGATCAGCATGCACCCAGAGTCATTCCCGATGCGAATGGCGACG
CTGATTCTTACAATGAGCATGCAGAGACCACAGTCACAGGCGGCTTCTTC
AAAGAGGAAGCGGAGGATCCGGCTCTGGACCCAGCCGCCCTCGCTGCCGG
GGGGAACATTTGGTCGGCCTCGTACGACACCCGCACGGAGGGAGAGCTCG
ATTACACAACGCTTCTCAACCGCGTCCTTCCCTTGGATATCCGCGTGCTG
GGCTGGGCGCCTGTCCCTGACGGGTTTTCCGCCCGCTTTTGCTGCTCCTA
CCGCACCTACCGATATTTCTTCGACGGCGACGGCTACGACTTAGGCCGCA
TGTCCGCCGCTGCCGGGCGTTTGGTGGGAGAGCACGACTTTCGAAACTTC
TGTAAAATGGACGTGACGACGGTGCAGAGCTTTGTGCGGGTGGTGCGGGA
GGCTACGGTCTTGACGGCGGGGGAGTGGGGATGGGCGTTGGACTCCAGGG
GACCCATGCCGGGCCCATCGTCCACGCCCGCCCGCCGCGTGTGCTGCCTG
CAGATCCAAGGCCAAGCTTTCCTCTGGCACATGGTCCGGTGCATCATGGC
CGTGCTCTTCGCCGTGGGCCGGGGCCAGGAGGAGGTGGGCGTGGTGGACG
ACCTCCTCGACGTCTCCCGCTACCCCGGGAAGCCTCTCTACGCGCTCGCC
TCCGAGCACGCCCTGGTCCTCCACGACTGCCACTTTGAGCGCCTGCGCTT
CCACCACCAACCCTCGGCGCTCTTCCGGCTTTGGACAGAGCTGCGGCTGG
CTTGGGGCCAGACGGCCGTCCGTCTGGCCAGGCTGCAGGATCAGATGGGT
TACGTGGGGGAGCTGGCTGTGCGTAAAGCCGCCCTGGACGGGTGGGTGGA
CGCAGAGCTAGGCATGGGTCGCTTCCAGGGGAGTCGATTCCAGAAACAGG
AAAAGAAGAAAAAGGGCAAGAGGAGAGAGGCGGGGGGAGGGGAGGGAGCG
GGGACGGCGGGAGGGGGGGGAGGAGAGGGAGGGAGTAAGACTTGTGAGGC
GATGAACAACGAATCCGGCTCGGTCCATGGGGTGAGTGACAGAGGAGGCG
AGGCGGAAGACGAGAAGAGCGTCGGAAAGAAGGAAGATACCGTGCTGATG
ACGTGGCGGGATGCGCTGGCCTACCTCTCGGCGCAGGGAATCGTTCCCGA
CCTGGAGGTGAGCAAGAAGAAAAAGGGCATCTGGACGCCCTACGTGCCCC
TGAAAGATCGTCCTCTGGGCAAAACCTACGAAGAGGCCGTGTTGGGGATG
GGGACTAAGAAACGGGAGCTCTACGAGCAGGCGCAACGGAAGAGAAAGGC
TGCCGAGACGAAGGGAGGCATGGAGGCATTTTTCCACAACATGCGAGGGA
CCTCCCCCGGCCCCTCGCTCAGTAGTAGCGGACGCAAAAGCCCTCATGAC
AAGAACGTGATCAATGATGACGTGAGCGCGGCCAAGAGGAAACCTCACCG
CACCAGTGATAGCGAGCTCAACCGTCTCAATCATCTTGCCGCCTCGAGCT
CTCACGATGGAGCTAATATCAATAGTCAAGCGCGATCGGAAAATGATTTA
CTCAGTCATAAGGGCTTGGGACATGGAGGTAAAAGTGCAGTGCAGCATGC
GACAGCATGGCCAAATTAGATGCCTTCCCCCTGTATAAATATTAAGTCTC
GCGCCTTCACCGCACAGGGGTGCATGAAGACCGCCCAGGGGCACGTGGAG
GGCCCAGCGCCTGAGTCTTGCACTGGACTGGATCAAGATGCTCATCTTCC
TTTTCAGTCACCCTCGCCTCCGCTTCCACAAGATTTGACTCGTAGTCAGC
TCTATTCGATGTTACGACACATACAAGAGCAGACAGACGGAAAAGCACTT
GTTGGTCACGCGCTCCACCACATCCTGTCCCTGGCGACTGGATCGACCCC
ACACCCACCGCCCAAGAAGCAGAAGTCGGCCAGGGGGTTCGACTTCAGTC
GATTTGGGACCCGTCACATTGCTATACAGTTCAGCTACGAGGGCGGTCCC
TACAACGGCCTGACCTCCAACGGGCCCAACGAGGAAGAGTCGGTGGAGGC
GCAGCTCCTGATGGCGTGCATCAAGACCAAGCTCATCCCGGACAGGGCCT
CCGCCTGCGTCTCTCGCTGTGGACGAACAGACAGAGGTGTCAATGCGCTG
CGGCAGGTCGTGGGTTTACGCGTGCGTTCCATCTTGTCGACGCCCTCTAC
CTCTCCCTGGCCCCCCGCCTGTGCCTCGTCCTCGAGCCCGTGCGCAAGCC
CAGATCAGCATGCACCCAGAGTCATTCCCGATGCGAATGGCGACGCTGAT
TCTTACAATGAGCATGCAGAGACCACAGTCACAGGCGGCTTCTTCAAAGA
GGAAGCGGAGGATCCGGCTCTGGACCCAGCCGCCCTCGCTGCCGGGGGGA
ACATTTGGTCGGCCTCGTACGACACCCGCACGGAGGGAGAGCTCGATTAC
ACAACGCTTCTCAACCGCGTCCTTCCCTTGGATATCCGCGTGCTGGGCTG
GGCGCCTGTCCCTGACGGGTTTTCCGCCCGCTTTTGCTGCTCCTACCGCA
CCTACCGATATTTCTTCGACGGCGACGGCTACGACTTAGGCCGCATGTCC
GCCGCTGCCGGGCGTTTGGTGGGAGAGCACGACTTTCGAAACTTCTGTAA
AATGGACGTGACGACGGTGCAGAGCTTTGTGCGGGTGGTGCGGGAGGCTA
CGGTCTTGACGGCGGGGGAGTGGGGATGGGCGTTGGACTCCAGGGGACCC
ATGCCGGGCCCATCGTCCACGCCCGCCCGCCGCGTGTGCTGCCTGCAGAT
CCAAGGCCAAGCTTTCCTCTGGCACATGGTCCGGTGCATCATGGCCGTGC
TCTTCGCCGTGGGCCGGGGCCAGGAGGAGGTGGGCGTGGTGGACGACCTC
CTCGACGTCTCCCGCTACCCCGGGAAGCCTCTCTACGCGCTCGCCTCCGA
GCACGCCCTGGTCCTCCACGACTGCCACTTTGAGCGCCTGCGCTTCCACC
ACCAACCCTCGGCGCTCTTCCGGCTTTGGACAGAGCTGCGGCTGGCTTGG
GGCCAGACGGCCGTCCGTCTGGCCAGGCTGCAGGATCAGATGGGTTACGT
GGGGGAGCTGGCTGTGCGTAAAGCCGCCCTGGACGGGTGGGTGGACGCAG
AGCTAGGCATGGGTCGCTTCCAGGGGAGTCGATTCCAGAAACAGGAAAAG
AAGAAAAAGGGCAAGAGGAGAGAGGCGGGGGGAGGGGAGGGAGCGGGGAC
GGCGGGAGGGGGGGGAGGAGAGGGAGGGAGTAAGACTTGTGAGGCGATGA
ACAACGAATCCGGCTCGGTCCATGGGGTGAGTGACAGAGGAGGCGAGGCG
GAAGACGAGAAGAGCGTCGGAAAGAAGGAAGATACCGTGCTGATGACGTG
GCGGGATGCGCTGGCCTACCTCTCGGCGCAGGGAATCGTTCCCGACCTGG
AGGTGAGCAAGAAGAAAAAGGGCATCTGGACGCCCTACGTGCCCCTGAAA
GATCGTCCTCTGGGCAAAACCTACGAAGAGGCCGTGTTGGGGATGGGGAC
TAAGAAACGGGAGCTCTACGAGCAGGCGCAACGGAAGAGAAAGGCTGCCG
AGACGAAGGGAGGCATGGAGGCATTTTTCCACAACATGCGAGGGACCTCC
CCCGGCCCCTCGCTCAGTAGTAGCGGACGCAAAAGCCCTCATGACAAGAA
CGTGATCAATGATGACGTGAGCGCGGCCAAGAGGAAACCTCACCGCACCA
GTGATAGCGAGCTCAACCGTCTCAATCATCTTGCCGCCTCGAGCTCTCAC
GATGGAGCTAATATCAATAGTCAAGCGCGATCGGAAAATGATTTACTCAG
TCATAAGGGCTTGGGACATGGAGGTAAAAGTGCAGTGCAGCATGCGACAG
CATGGCCAAATTAGATGCCTTCCCCCTGTATAAATATTAAGTCTCGCGCC
TTCACCGCACAGGGGTGCATGAAGACCGCCCAGGGGCACGTGGAGGGCCC
AGCGCCTGAGTCTTGCACTGGACTGGATCAAGATGCTCATCTTCCTTTTC
AGTCACCCTCGCCTCCGCTTCCACAAGATTTGACTCGTAGTCAGCTCTAT
TCGATGTTACGACACATACAAGAGCAGACAGACGGAAAAG back to top
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