EWM23621.1, cds7045 (CDS) Nannochloropsis gaditana

Overview
NameEWM23621.1
Unique Namecds7045
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:355992..356217 -
Alignment locationCM002470.1:353733..355801 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23621.1
Producttrna pseudouridine synthase 3
Orig transcript idgnl|cribi|Naga_100137g19.23.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:355992..356217 -
CM002470.1supercontigCM002470.1:353733..355801 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR001406PsdUridine_synth_TruA
IPR020097PsdUridine_synth_TruA_a/b_dom
IPR020095PsdUridine_synth_TruA_C
IPR020094PsdUridine_synth_TruA_N
Homology
BLAST of EWM23621.1 vs. NCBI_GenBank
Match: gi|585104772|gb|EWM23621.1| (trna pseudouridine synthase 3 [Nannochloropsis gaditana])

HSP 1 Score: 1586.62 bits (4107), Expect = 0.000e+0
Identity = 764/764 (100.00%), Postives = 764/764 (100.00%), Query Frame = 0
Query:    1 MPSPCINIKSRAFTAQGCMKTAQGHVEGPAPESCTGLDQDAHLPFQSPSPPLPQDLTRSQLYSMLRHIQEQTDGKALVGHALHHILSLATGSTPHPPPKKQKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMACIKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVTGGFFKEEAEDPALDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVTTVQSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRFHHQPSALFRLWTELRLAWGQTAVRLARLQDQMGYVGELAVRKAALDGWVDAELGMGRFQGSRFQKQEKKKKGKRREAGGGEGAGTAGGGGGEGGSKTCEAMNNESGSVHGVSDRGGEAEDEKSVGKKEDTVLMTWRDALAYLSAQGIVPDLEVSKKKKGIWTPYVPLKDRPLGKTYEEAVLGMGTKKRELYEQAQRKRKAAETKGGMEAFFHNMRGTSPGPSLSSSGRKSPHDKNVINDDVSAAKRKPHRTSDSELNRLNHLAASSSHDGANINSQARSENDLLSHKGLGHGGKSAVQHATAWPN 764
            MPSPCINIKSRAFTAQGCMKTAQGHVEGPAPESCTGLDQDAHLPFQSPSPPLPQDLTRSQLYSMLRHIQEQTDGKALVGHALHHILSLATGSTPHPPPKKQKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMACIKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVTGGFFKEEAEDPALDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVTTVQSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRFHHQPSALFRLWTELRLAWGQTAVRLARLQDQMGYVGELAVRKAALDGWVDAELGMGRFQGSRFQKQEKKKKGKRREAGGGEGAGTAGGGGGEGGSKTCEAMNNESGSVHGVSDRGGEAEDEKSVGKKEDTVLMTWRDALAYLSAQGIVPDLEVSKKKKGIWTPYVPLKDRPLGKTYEEAVLGMGTKKRELYEQAQRKRKAAETKGGMEAFFHNMRGTSPGPSLSSSGRKSPHDKNVINDDVSAAKRKPHRTSDSELNRLNHLAASSSHDGANINSQARSENDLLSHKGLGHGGKSAVQHATAWPN
Sbjct:    1 MPSPCINIKSRAFTAQGCMKTAQGHVEGPAPESCTGLDQDAHLPFQSPSPPLPQDLTRSQLYSMLRHIQEQTDGKALVGHALHHILSLATGSTPHPPPKKQKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMACIKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVTGGFFKEEAEDPALDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVTTVQSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRFHHQPSALFRLWTELRLAWGQTAVRLARLQDQMGYVGELAVRKAALDGWVDAELGMGRFQGSRFQKQEKKKKGKRREAGGGEGAGTAGGGGGEGGSKTCEAMNNESGSVHGVSDRGGEAEDEKSVGKKEDTVLMTWRDALAYLSAQGIVPDLEVSKKKKGIWTPYVPLKDRPLGKTYEEAVLGMGTKKRELYEQAQRKRKAAETKGGMEAFFHNMRGTSPGPSLSSSGRKSPHDKNVINDDVSAAKRKPHRTSDSELNRLNHLAASSSHDGANINSQARSENDLLSHKGLGHGGKSAVQHATAWPN 764          
BLAST of EWM23621.1 vs. NCBI_GenBank
Match: gi|1210515231|dbj|GAX25943.1| (tRNA pseudouridine38/39 synthase [Fistulifera solaris])

HSP 1 Score: 280.796 bits (717), Expect = 7.238e-82
Identity = 196/564 (34.75%), Postives = 268/564 (47.52%), Query Frame = 0
Query:  115 RHIAIQFSYEGGPYNGLTSN-GPNEEESVEAQLLMACIKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVTGGFFKEEAEDPALDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVTTVQSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRFHHQPSALFRLWTELRLAWGQTAVRLARLQDQMGYVGELAVRKAALDGWVDAELGMGRFQGSRFQKQEKKKKGKRREAGGGEGAGTAGGGGGEGGSKTCEAMNNESGSVHGVSDRGGEAEDEKSVGKKEDTVLMTWRDALAYLSAQG-IVPDLEVSKKKKGIWTPYVPLKDRPLGKTYEEAV--LGMGTKKRELYE-QAQRKRKAAETKGGMEAFFHNM 673
            RHIA+Q  Y+G  Y GL  N G   ++SVE  L  A  +  LI  R+S   SRCGRTD+GV+A  QVV L+++S +S                  AS D+   R++   N D                   E    A+D   L       SA    RT  E  Y  +LN +LP DI+VLGW PV D FSARF C  RTYRYFF  +  DL RM  A   L+GEHDFRNFCKMDV  V +F RV+ +A ++           + P       PA  VC  QIQGQAFLWH +RCI ++LF++GRG E   ++ +LLDV +YPGKP Y LA E  LVLH+C F  L+F +  + L+ ++   +  W +  +  AR+Q+ +  +  L VR   L  +    L   R Q         KK  KR  A                       + NE  +V   S+R                 +++W+ A+ +L   G I+ + E           ++P+ DR +G TYEE +  L    +KR+ YE    +KRK   +K   E F+  M
Sbjct:   89 RHIALQIYYDGSKYTGLAENVGVEHDQSVEKALFRALRQAYLIEGRSSCQYSRCGRTDKGVSAAGQVVALQLKSAISLQ----------------ASWDEAGQRLL---NTD-------------------ELPKNAVDALQLWVPPRKPSAPKQLRTVREYAYDRVLNNLLPSDIQVLGWVPVDDAFSARFSCRDRTYRYFFHSESMDLERMRDAMTLLLGEHDFRNFCKMDVEKVYNFKRVIHQAIIV----------EKEP-------PASGVCYFQIQGQAFLWHQIRCIASILFSIGRGYESPTLISELLDVKKYPGKPAYPLAPERPLVLHNCGFGHLQFGYTVANLWSVYETQKEQWKELILTAARIQNLLETIESLTVRTDDLQAFY---LEKKRVQS--------KKNNKRYFAN----------------------LTNEIAAVP--SER-----------------MISWKQAMEWLQQNGQIMNNTET----------HIPMADRSMGTTYEEKLQALQASDRKRQRYETNVMQKRK---SKQEDEQFYAEM 532          
BLAST of EWM23621.1 vs. NCBI_GenBank
Match: gi|1210512859|dbj|GAX28157.1| (tRNA pseudouridine38/39 synthase [Fistulifera solaris])

HSP 1 Score: 273.478 bits (698), Expect = 4.083e-79
Identity = 185/558 (33.15%), Postives = 259/558 (46.42%), Query Frame = 0
Query:  115 RHIAIQFSYEGGPYNGLTSN-GPNEEESVEAQLLMACIKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVTGGFFKEEAEDPALDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVTTVQSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRFHHQPSALFRLWTELRLAWGQTAVRLARLQDQMGYVGELAVRKAALDGWVDAELGMGRFQGSRFQKQEKKKKGKRREAGGGEGAGTAGGGGGEGGSKTCEAMNNESGSVHGVSDRGGEAEDEKSVGKKEDTVLMTWRDALAYLSAQGIVPDLEVSKKKKGIWTPYVPLKDRPLGKTYEEAV--LGMGTKKRELYE-QAQRKRKAAETKGGMEA 668
            RHIA+Q  Y+G  Y GL  N G   ++SVE  L  A  +  LI DR+S   SRCGRTD+GV+A  QVV L ++S +S                  AS D+   R++   N D                   E    A+D   L       SA    RT  E  Y  +LN +LP DI+VLGW PV D FSARF C  RTYRYFF  +  DL RM  A   L+GEHDFRNFCKMDV  V +F RV+ +A ++                 P S+    VC  QIQGQAFLWH +RCI ++LF++GRG E   ++ +LLD+++YPGKP Y LA E  LVLH+C F  L+F +  + ++ ++   +  W    +  AR+Q+ +  +  L VR   L  +          + +R Q    KK  KR                          + NE  ++                       L++W+ A+ +L   G         +       ++P+ DR +G TYEE +  L    +KR+ YE +  +KRK+ +      A
Sbjct:   89 RHIALQIYYDGAKYTGLAENVGVEHDQSVEKALFRALRQAHLIEDRSSCQYSRCGRTDKGVSAAGQVVALELKSAISLQ----------------ASWDEAGQRLL---NTD-------------------ELPKNAVDALQLWVPPRKPSAPKQLRTVREYSYDRVLNNLLPSDIQVLGWVPVDDAFSARFSCRDRTYRYFFHSESLDLERMREAMTLLLGEHDFRNFCKMDVEKVYNFKRVIHQAIIVEK--------------EPRSSG---VCYFQIQGQAFLWHQIRCIASILFSIGRGYESPSLITELLDINKYPGKPAYPLAPERPLVLHNCGFGHLQFGYTVANIWSVYETQKEEWKDLILTAARIQNLLETLESLTVRTDDLQAFY--------LEKTRVQ---SKKNNKRFLVN----------------------LTNEFAALPS-------------------ETLVSWKQAMEWLQQNG---------QAMNNSETHIPMADRSMGTTYEEKLQALQASDRKRQRYETKVVQKRKSKQEDAQFYA 530          
BLAST of EWM23621.1 vs. NCBI_GenBank
Match: gi|1183470424|gb|ORY94331.1| (pseudouridine synthase [Lobosporangium transversale])

HSP 1 Score: 267.7 bits (683), Expect = 2.019e-76
Identity = 161/456 (35.31%), Postives = 237/456 (51.97%), Query Frame = 0
Query:  100 KQKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMACIKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVTGGFFKEEAEDPALDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVT-TVQSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRFHHQ----------PSALFRLWTELRLAWGQTAVRLARLQDQ--------------MGYVGELAVRKAALDGWV----DAELGMGRFQGSRFQKQE 526
            K+K  R FDFS++  RH+A + +Y G PY G  S G  + ++VE++L  A +  ++I D  +   SRCGRTDRGV+ L QV+ L VRS L  P +SP+                    VI     + D Y+  AE   + G  +EE     L+  A     N    + D    GEL Y  ++NR+LP DIR++ WAPVP+ F+ARF C++R Y+YFF     D+ RM  AA + +G HDFRNFCK D + T+ ++ R +   ++ T  E  +      PM     T  R    L ++G AFLWH VRC+MAVLFAVG+G EE  V+D ++D+ + P KP Y +AS+  LV +DCHFE + + +Q          P  L+R   +    +   ++  +R+  Q              M  +GE A R AA +  +    D  + MG+   +  Q+Q+
Sbjct:  106 KRKDRRPFDFSKYAKRHVAFKIAYFGWPYAGFASQGAVDVKTVESELFNALLAARIIEDPQNCNYSRCGRTDRGVSGLGQVIALTVRSAL--PKSSPY--------------------VI---RSEGDGYDPKAEEEKSEGLTQEE-----LESKAGVYYKNGVKRNKDGSVFGELAYLNIVNRLLPPDIRIVAWAPVPEDFNARFHCAWREYKYFFPKGIIDIDRMRTAATKFLGTHDFRNFCKYDSSKTIVNYDRTIMAISIDTVPEHEF------PM-----TQGREFYQLTLRGSAFLWHQVRCMMAVLFAVGQGLEEPEVIDQMMDIKQCPAKPNYDMASDLPLVFYDCHFENVEWQYQNEVDLVSDITPLRLYRAMEDQWSCYVTKSLMYSRMLQQLDKAMLHNLPERGDMTLLGEYAQRNAAKENNISLGGDLRMFMGKKYATLMQRQK 520          
BLAST of EWM23621.1 vs. NCBI_GenBank
Match: gi|1032644033|gb|OAQ25366.1| (tRNA pseudouridine synthase [Mortierella elongata AG-77])

HSP 1 Score: 266.929 bits (681), Expect = 8.229e-76
Identity = 158/413 (38.26%), Postives = 221/413 (53.51%), Query Frame = 0
Query:   87 SLATGSTP---HPPPKKQKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMACIKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVTGGFFKEEAEDPALDPAALAAGGNIWSA----SYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVT-TVQSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRFHHQPSALFRLWTELRLAWGQTAVRLAR-LQDQ 490
            S AT STP        K+K  R FDFS++  RH+A + +Y G PY G  S G NE ++VE++L  A +  ++I D      SRCGRTDRGV+ L QV+ L VRS L  P +SP                 H  R       + D +    +     G  +EE E         A  G  W      + D    GEL Y  ++NR+LP DIR++ WAPV + F+ARF CS+R Y+YFF     D+ +M AA+ + +G HDFRNFCK D + T++++ R + E ++ T  E  +        P   S   R    L ++G AFLWH VRC+M+VL +VG+G EE  V+D L+DV + P KP Y +AS+  LVL+DCHFE + + +Q        TE+ L    T +RL R ++DQ
Sbjct:   97 SEATASTPVYTTIETPKRKDRRPFDFSKYAKRHVAFRVAYFGWPYGGFASQGMNEIKTVESELFNAMLAARIIEDPLQCNYSRCGRTDRGVSGLGQVIALTVRSAL--PKSSP-----------------HVIR------SEGDGFVPETKDLADEGLTQEELE---------AKAGVYWKRGIKRNKDGSVFGELAYLNIINRLLPPDIRIVAWAPVAEDFNARFHCSWRQYKYFFPKGIIDIEKMRAASVKFLGTHDFRNFCKYDASKTIENYDRTIHEISIETVPEHNF--------PAKKS---REFYQLTLKGSAFLWHQVRCMMSVLLSVGQGLEEPEVIDQLMDVQQCPAKPNYDMASDLPLVLYDCHFENIEWQYQ--------TEVDLVNDITPLRLYRAMEDQ 456          
BLAST of EWM23621.1 vs. NCBI_GenBank
Match: gi|672820031|gb|KFH64929.1| (hypothetical protein MVEG_09657 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 260.766 bits (665), Expect = 9.553e-74
Identity = 164/446 (36.77%), Postives = 231/446 (51.79%), Query Frame = 0
Query:   51 PLPQDLTRSQLYSMLRHIQEQTDGKALVGHALHHILSLATGSTPHPPPKKQKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMACIKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVTGGFFKEEAEDPALDPAALAAGGNIWSA----SYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVT-TVQSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRFHHQPSALFRLWTELRLAWGQTAVRLAR-LQDQ 490
            P+P  LT S   S+       TD     G  +    S +   +P   P+K K  R FDFS++  RH+A + +Y G PY G  S G NE ++VE+++  A +  ++I D  +   SRCGRTDRGV+ L QV+ L VRS  S P +SP                 H  R       + D Y             +EE E         A  G  W      + D    GEL Y  ++NR+LP DIR++ WAPV + F+ARF CS+R Y+YFF     D+ RM  AA + +G HDFRNFCK D + T++++ R + E ++    E  +A  SRG         +     L ++G AFLWH VRC+MAVLF VG+G EE  ++D ++D+ + P KP Y +AS+  LVL+DCHFE L + +Q        TE+ L    T +RL R ++DQ
Sbjct:   63 PIPAHLTGSDTSSIPGSPITATDS----GEPISRPESPSNNYSPIETPRK-KDRRPFDFSKYAKRHVAFRVAYFGWPYGGFASQGVNEIKTVESEIFNALMAARIIDDPLTCNYSRCGRTDRGVSGLGQVIALTVRS--SLPKSSP-----------------HVIR------SEGDGYVPETPNPDGPVLTQEEQE---------AKEGVYWKRGIKRNKDGSVFGELAYLNIINRLLPPDIRIVAWAPVSEDFNARFHCSWRQYKYFFPKGIIDIERMRTAAVKFLGTHDFRNFCKYDASKTIENYDRTIHEISIEPVPEHEFA--SRG---------SNEFYQLTLKGSAFLWHQVRCMMAVLFCVGQGLEEPDIIDKMMDLKQCPAKPNYDMASDLPLVLYDCHFENLEWQYQ--------TEVDLVNDITPLRLYRAMEDQ 450          
BLAST of EWM23621.1 vs. NCBI_GenBank
Match: gi|530474311|gb|EQB54565.1| (tRNA pseudouridine synthase A [Colletotrichum gloeosporioides Cg-14])

HSP 1 Score: 215.312 bits (547), Expect = 8.598e-58
Identity = 157/424 (37.03%), Postives = 207/424 (48.82%), Query Frame = 0
Query:   58 RSQLYSMLRHIQEQTDG-KALVGHALHHILSLATGSTPHPPPKKQKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMACIKTKLIPDRASACV-------SRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNE-HAETTVTGGFFKEEAEDPALDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPD-GFSARFCCSYRTYRYFF-------------DG--DGY-DLGRMSAAAGRLVGEHDFRNFCKMDV-TTVQSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHF 454
            + +L S +RH++ + D  KA    A+        G+   PP KK+K+ +G D SR+ TR IA++ +Y G  Y G          ++E +L  A  K  LI     A V       S+CGRTDRGV+A  QV+GLRVRS    P   P P                         GDAD+  E  AE T       E  ED    P         WS       E E+DY   LNR+LP DIR+L W P P  GFSARF C  R YRYFF             DG  +GY D+  M AAA   VG+HDFRNFCK+D    + +F R + EA V    + G AL   G +     +   +V    I+G AFLWH +R ++++LF VG+  E+  +V +LLDV + P KP Y LA++  LVL +C F
Sbjct:   13 KERLISRIRHLEHELDKQKAAASKAVD-------GAAAPPPAKKRKTKKGIDPSRYSTRFIALKLAYLGKRYGGFEYADSAALPTIEGELWNALTKACLIFPEDPAVVNFDCCEYSKCGRTDRGVSAFGQVIGLRVRSSKPLPKPEPAP-----------------------TEGDADTPMEGTAEKT-------ETEEDTKKKPEVE------WS------DEKEIDYIKTLNRLLPDDIRILAWCPSPPPGFSARFSCEERQYRYFFTQPAFAPTTGVSADGLKEGYLDIEAMDAAAQLFVGDHDFRNFCKVDGGKQITNFERRMFEAGVEEVKDVGSALPYLG-LSSADGSKLPKVYSFNIRGTAFLWHQIRHMVSILFLVGQRLEKPELVAELLDVEKTPRKPNYDLANDTPLVLWNCVF 386          
BLAST of EWM23621.1 vs. NCBI_GenBank
Match: gi|1048066736|ref|XP_017485891.1| (PREDICTED: tRNA pseudouridine(38/39) synthase-like [Rhagoletis zephyria])

HSP 1 Score: 211.846 bits (538), Expect = 1.433e-56
Identity = 146/423 (34.52%), Postives = 198/423 (46.81%), Query Frame = 0
Query:   82 LHHILSLATGSTPHPPPKKQKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMACIKTKLIPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAE-TTVTGGFFKEEAEDPALDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGF-SARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVTT-VQSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFE-----RLRFHHQPSALFRLWTELRLAWGQTAVRLARLQDQMGYVGE 496
            +  +  L     P+      +  R F+FS++  RHI ++F Y GG Y G          +VE +L  A IKTKLI  R +A   RCGRTD+GV+A  QVV L VRS L        P           + D        DA GD  S  +      V  G+  E   + A D     AGG+  +    T    ELDY + LN VLP DIRV+ WAP+     SARF C  R Y Y+F      + RM  A   L+G HDFRN CKMD+   V +++R V  A+V         L+               +C  QI+  AFLWH +RCIMAVLF +G G+EE  ++  LLD+   P +P Y LA +  LVL+   ++     R  +    + L    T L   W + AV+ A  +  +G + E
Sbjct:   37 IRQLQGLLNKQAPNGKKTSTRPGRTFEFSQYKQRHIFLRFLYLGGSYEGYVVQEATLN-TVEEKLFEALIKTKLITSRETANYHRCGRTDKGVSAFCQVVSLTVRSRLKQGPGLIVPEGYTGEPVTNDAGDTGT-----DAGGDXRSRLKQGPGLIVPEGYSGEAVTNDAGDTGT-DAGGDQPAVDLST---AELDYISALNGVLPKDIRVIAWAPMASTTTSARFDCRRRLYHYYFPRGQLQIERMHEACQHLIGSHDFRNLCKMDINNGVLTYIRRVFAASVT-------KLEPTSSASADGDDSPYSMCLFQIEASAFLWHQIRCIMAVLFLIGLGREEPSIIARLLDIEAQPARPQYGLAPDLPLVLYAAAYDTETVPRWLYGRNSTVLQTTITSLHEQWTRNAVQAAITRSMIGSLVE 442          
BLAST of EWM23621.1 vs. NCBI_GenBank
Match: gi|168049023|ref|XP_001776964.1| (predicted protein [Physcomitrella patens] >gi|162671665|gb|EDQ58213.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 212.616 bits (540), Expect = 1.827e-55
Identity = 136/398 (34.17%), Postives = 198/398 (49.75%), Query Frame = 0
Query:  100 KQKSARGFDFSRFGTRHIAIQFSYEGGPYNGLTSNG--PNEEESV------EAQLLMACIKTKLIPDRAS-ACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVTGGFFKEEAEDPALDPAALAAGGNIWSASY-DTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDL-------------GRMSAAAGRLVGEHDFRNFCKMDVTTVQSFVRVVREATVLTAGE-WGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRFHHQPSALFRLWTEL 473
            K+++A     S + +RH+A++  Y G  Y G  S    PN  E        + +L  A  +T++I   A+ A  +RCGRTD+GV+A+ QVV L +RS +  P       +   +     S    + + +P+  G+  S+ ++     +G        D + D  A+A         +  T  E E DY  +LNR LP DIRVLGW PVP GF+ARF C YR Y+YFF  DG ++               M  A  +  GEHDF NFCKMD   V +++R +    ++ + E WG                 + V  + ++G AFLWH VRC+ AVLF VG G E+  +V++LLDV +   KP Y +ASE  L+L  C ++ L F   P A+ RL   L
Sbjct:  200 KKRNAMEKSMSHYCSRHVALKVMYLGTGYQGFASQAGSPNTVEVQNSLIGGQTELFAALHRTRMITGTAAEAKYTRCGRTDKGVSAVGQVVALYLRSKIQ-PRRQENIVSTGDAEEELNSKSSISAQGVPE--GEDGSFTKN-----SGFVMDLSCIDHSGDRVAMARASRKEEEQFARTAYEDEYDYVGILNRALPEDIRVLGWCPVPPGFNARFSCMYREYKYFFIDDGLNIDVWTLIYAFNRQYNVMKFACKQFEGEHDFTNFCKMDAANVHNYMRTITHFDIIPSNEKWG----------------GKSVWIMNVKGTAFLWHQVRCMAAVLFMVGAGHEKPTIVEELLDVKKIVRKPQYIMASETPLLLFHCGYQGLSFRCHPDAVKRLRLHL 573          
BLAST of EWM23621.1 vs. NCBI_GenBank
Match: gi|297739353|emb|CBI29343.3| (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 206.453 bits (524), Expect = 3.701e-55
Identity = 124/352 (35.23%), Postives = 178/352 (50.57%), Query Frame = 0
Query:  109 FSRFGTRHIAIQFSYEGGPYNGLTSNGPNEEESVEAQLLMACIKTKL-IPDRASACVSRCGRTDRGVNALRQVVGLRVRSILSTPSTSPWPPACASSSSPCASPDQHAPRVIPDANGDADSYNEHAETTVTGGFFKEEAEDPALDPAALAAGGNIWSASYDTRTEGELDYTTLLNRVLPLDIRVLGWAPVPDGFSARFCCSYRTYRYFFDGDGYDLGRMSAAAGRLVGEHDFRNFCKMDVTTVQSFVRVVREATVLTAGEWGWALDSRGPMPGPSSTPARRVCCLQIQGQAFLWHMVRCIMAVLFAVGRGQEEVGVVDDLLDVSRYPGKPLYALASEHALVLHDCHFERLRF 459
             +    R++A++  Y G  + G  S   + + +VE+++  A  KT L + D+     SRCGRTD+GV+++ QV+ L +RS L                    + ++++  V+P+     + Y E  E    GG                  G ++ S       EGE+DY  +LNRVLP DIRV+GW PVP GF ARF C  R Y+YFF     ++  M +A  + VGEHDFRNFCKMD   V ++ R +    +                P  +     ++  ++I+G AFLWH VRC++AVLF +G+G E   VVD LLD  R   KP YA+A E  LVL  C FE L+F
Sbjct:   95 MNHISKRYVALKVMYFGPRFYGFASEA-HMDPTVESEIFKALEKTWLAVGDKKELQYSRCGRTDKGVSSVGQVIALFLRSNL----------------KEIGAREENSKEVVPE-----EQYEERREVKDEGG------------------GDSLAS-------EGEIDYMRVLNRVLPKDIRVMGWCPVPIGFHARFSCLSREYKYFFWRGNLNILAMESAGKKFVGEHDFRNFCKMDAVNVHNYRRHIISFEI---------------APTNNRYDGNQLWAIKIKGSAFLWHQVRCMVAVLFMIGQGLESPDVVDALLDTERTSRKPQYAMAPEIPLVLESCEFEGLKF 384          
The following BLAST results are available for this feature:
BLAST of EWM23621.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104772|gb|EWM23621.1|0.000e+0100.00trna pseudouridine synthase 3 [Nannochloropsis gad... [more]
gi|1210515231|dbj|GAX25943.1|7.238e-8234.75tRNA pseudouridine38/39 synthase [Fistulifera sola... [more]
gi|1210512859|dbj|GAX28157.1|4.083e-7933.15tRNA pseudouridine38/39 synthase [Fistulifera sola... [more]
gi|1183470424|gb|ORY94331.1|2.019e-7635.31pseudouridine synthase [Lobosporangium transversal... [more]
gi|1032644033|gb|OAQ25366.1|8.229e-7638.26tRNA pseudouridine synthase [Mortierella elongata ... [more]
gi|672820031|gb|KFH64929.1|9.553e-7436.77hypothetical protein MVEG_09657 [Mortierella verti... [more]
gi|530474311|gb|EQB54565.1|8.598e-5837.03tRNA pseudouridine synthase A [Colletotrichum gloe... [more]
gi|1048066736|ref|XP_017485891.1|1.433e-5634.52PREDICTED: tRNA pseudouridine(38/39) synthase-like... [more]
gi|168049023|ref|XP_001776964.1|1.827e-5534.17predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|297739353|emb|CBI29343.3|3.701e-5535.23unnamed protein product, partial [Vitis vinifera][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7062rna7062Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications