rna7056, rna7056 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7056
Unique Name	rna7056
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2241
Alignment location	CM002470.1:333952..336886 -

Link to JBrowse

Properties


Property Name	Value
Product	pas-domain protein
Orig transcript id	gnl\|cribi\|Naga_100165g4.9689.mrna
Orig protein id	gnl\|cribi\|Naga_100165g4.9689
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:333952..336886 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100165g4	gene6822	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23637.1	cds7039	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7056	rna7056-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:333952..336886-
coding sequence from alignment at CM002470.1:333952..336886-

mRNA sequence

>rna7056 ID=rna7056|Name=rna7056|organism=Nannochloropsis gaditana|type=mRNA|length=2241bp
GTTCCACACGTTGCATCGGCAGGTTTTCCACTGGGGGCCATCAACTTGCC
CAACCCTCACTATGGCTGTCCTCTTTTCCTTGGTATATATTTTACGACAC
GAGTCTTAGTTGCTTGTACCCTCAACTTTGCACCAAGGGCAAAGAACCAG
GGTATTAAGGTCTCACTTTATGGAAGCATGGACTCTAGCACCGAAACGTG
TGTTCTGAAGGATTGCATATGCATCAGTTCTAGCAAGCACAGAATTAAGG
AGAGAGCTCGTCGAGACAGCGCGGCTTTTCACTTCCCGCCGGATATTTCT
TCTCCATTGTTTTATACCAACACATTATCATTATCATTATCGACGAACAG
TGAAGAGTCAACTGTGCCATCACAAGGCGCGGAGGGGCCGACAAATGGAG
AGATATCAAAAAATAGAGAAAAATGGGGGTGGAAATTTAGGAGAAGGCAC
ATACGGGGTGGTGTACAAGGCCCGAGACAAGCAGACAAATGATATAGTGG
CCCTGAAGAGGATTCGGTTGGAAATGGAGGACGAGGGGATACCAAGCACG
GCGTTGAGGGAGATCTCGCTGCTCCAAGAGCTGCGCCACCCTTGCATCGT
CGAGCTCCTGGACTGCGTTCAGAGCGAGGGCCGCCTCTACCTCGTCTTCG
AGTTCGTGGACCGGGACCTGAAAAAGTACATGGAGGCCCAGCCAGGGACG
CTCTCCCGGGGCGTGGTCAAATCCTTCCTCTTCCAGATCTTCCATGGCCT
CGCCTTCTGCCATGCCCGCGGCATCATGCACAGGGACCTGAAGCCTCAGA
ACCTCCTGGTCTCCAAGGAGGGTCGCCTCAAAATCGCCGACTTCGGCCTC
GCCCGGGCCTTCGTCCCCCCCATCCGCCCGCTCACCCACGAGGTGGTGAC
GCTGTGGTACCGGCCACCCGAGATCTTGCTGGGCTCCCAGACCTATGCCC
CCCCCGTGGACGTGTGGGCCTGTGGGGCCATTTTTGTCGAGTTGCTCTGC
AAGCGGGCCATGTTCCAGGGGGACTCGGAGGTCGACCAACTCTTCAAGAT
TTTTCGCTCGTTAGGCACCCCTTCCGAAGAGACGTGGCCCGGCGTGACGG
CCCTCCAAGACTGGAATCCGGCCTTCCCCGTCTGGCCCCCCGTGAAGCTC
ACCAAGTACTGCCCCTCCATAGATGAGGCGGGCTTGGATTTGCTGGAGAA
ACTGGTGGTGCTTGATCCCAAGAGCCGGATTAGCGCGAAGACCGCCCTGT
ACCACCGGTACTTTGATGACTTGGACAAGCAGCAATTTCGGCAATGAGCC
GACTCGACCCCCGGGCCGGGACAAGGGAGGACGAGGGAGGAAAAGCTGGG
AAAGTGGAGCGGCCACGTGATGTGTGGAAATTTAAGGCGTGGACCTCCAG
GGCCAGGACGTGGTGGAGCTACAGGCGATGCCCGAGGCTGAAAGGCAGGG
GGCGAGGGAAATCGAGAGGGGTAGGAAGGGGGCCTGTTCCGTGCACGGAA
GTGCCCAAAATTATATTTGAGAGTTTGAAGAGAAGAGAAATGTCGCGGAG
ACAATCCGATGCTCTTATGGCTGCGGAAATGGTAGTCTGGTAGTTTCAGC
TTCAGTATCTGATGCAGGTGGTCGCGTGAAGATATGAGGAAAGATGGTAT
GTCGAGACAGCTGGTAAGAGGGTTCTTGGCAGTGAGGTACTAAGGAAGTA
ATCCTTAGTACCTCACTGTCACTATCCGAGGGAGCAGAAGAGACAGCGTT
AGGCGAGTTCGGGATGGGTTGCCGAAAGGGAAGGATGACGGAGGTTCAGG
ATGAGTGGAGGGACGAGTTGCTAGGGAATCGCCTGACAACGGTCGTCTTT
GCGCAGGATGCACGCAATGGCCGTGCTCGGATTCGAAATGTGAAAGGAGC
GGTGTGAATGGATTCTTTGCCAAGAGAGACGAGGCTTGGAATTCGCCTGT
ATGTTGTGCCAGCTTACCACGGAGGGAAAAAAGCGACCCGCCCCGACGTG
GAAATGAAAACTCGGTGGAAAATGGTTGAGGGGACAAGCGTGGCTGCACA
TGGCACGCTTCCCGGCTCTTCCTGTTCGCTCTTCCTTTCCTTCGATCATC
TTCCGGCTGGTCTGTACTCCAAACAAATGATCACTTGCTTCATGCTCGCG
CCCCTCAAAGGGTCGTCGCCTTTTCCGACTTATAAGTGTTTGCACACAAT
GGTATTTCACACGGAGCATCGCTGGCTCAGTACCGCACACC

protein sequence of rna7056

>rna7056-protein ID=rna7056-protein|Name=rna7056|organism=Nannochloropsis gaditana|type=polypeptide|length=285bp
MPGGIDADDRGSSGDDGSGGFLLVRCRWRRGRGAGAGAMSVKRKQDRNAR
EQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVG
GMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSV
REDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAEL
GRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALPK
VGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSLD

mRNA from alignment at CM002470.1:333952..336886-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7056 ID=rna7056|Name=rna7056|organism=Nannochloropsis gaditana|type=mRNA|length=2935bp|location=Sequence derived from alignment at CM002470.1:333952..336886- (Nannochloropsis gaditana)
AGAGCTGCAGCAGCGCCGACTCCGGGAACGGGCGTGAATGCCCGGAGGGA
TCGACGCCGATGACAGAGGGTCTAGTGGAGACGATGGGTCTGGAGGGTTT
CTTCTCGTCCGGTGCCGGTGGAGGAGGGGGCGGGGGGCGGGGGCGGGAGC
GATGAGCGTGAAGCGCAAACAAGATCGGAACGCCCGGGAGCAGAAGCGCT
CCTTGAAGATCAGCCAGCAGATCGGTCACCTGAAGAGCCTGCTGGAGGAG
GAGGGGCGCAAGGTGAAGAAGAACAGCAAGATGGCGATCCTCCTGAGTGT
GGAGGATTACATCAAGGAGCTGGAGGAGGAGGTGGGGGGGATGGTGCTGG
GCCGGGAGGGCGGGCGGGAGGAGGGGGAGGGAATGAAGGAAGGGATGGAC
GTGGGCGTGGGCACAAGCGTGGAGGCCGCGGGCCAGAGGAACGGCCGGAG
CGAGAGCGATCTGTCCGTGGCGACGGCGACCTCGGTGCGGGAGGACCAGG
AGGTGGCGCGGGGCGTGGGCTACCACTCCCTTTTCAAGCAGGTGAGCACC
CCCTTGGCCGTGGCGTCGGTGGAGGGGCGATTCATCGACGCGAATGTGCG
CTTTGAGATGGCCACAGGATACACCAAGGCGGAACTGGGGCGCTTGACGT
TCTTCAACCTGGTGGCTCCGGAAGAGCTGCAGGACACCTTTGCGGCCGTT
GCCCGCATGCTTAACCAGCCGAGCGGGGGGGAAGAGGAGAAGGAGGACTC
GAAAATGCTGCGATTGACGAGGCGGGCCCTGCCCAAGGTGGGGATCGGGG
GCCTTGGCCAGGAGGCGCAGAATCTGCACATCACCATCTCTTTGGTGAAA
CCGCAGGAGGATTCGATGGCCTTTTTTCAGTGCAGCCTGGACTGATGGAA
CAGGTTGTTGTGAGGCGAGAGAGAAGCTAGAGAATGACGGATGGTGGAGA
GGAAGTATTTTGGTGGAGGGAGACGGCGTGCAGGAGGTGGGTGTGCATGG
AGGCGTGGGGGCACAGAGGATGGGGTTCCCAGACCCGCGCCAGAGGCCAT
GTCGCACTCGCTGCGGGCGAGATGGGCGCCCCCGATGGCTATTTTGCCGA
GGAGCAAGTGGTTGATCCCGGGCCCGGCGTGACTAATCGAGGAGCATTTA
AAATTAAAGGGCGTGCCGCGCCATGTCCACAAGTATCGATTTTTTGTGAT
TAAAGCCGAGAGACTTGAGATTTCTCAGCACGAGATGTAGACTGACAGGT
AGATCGAAGGGATTGAGATGGTTGGCAACAGGCGGAAGTCGCGAGCACTT
CCAGCAAAAGTGTACGAAGAGGGAAAATGACAGGGGATGGAAGAGATTTT
ATGTGCTTTTAAATCATACTTGTTTGTAACAGCTTTGTGTTGTGCGTGGA
AAGGCACTGCACACGATCTCACACATATCGCACGCAAAGTTACTGGTTGA
AACGACCCGGAAAAGACGATAGTACATGTGAGCAGGAATTTCATGGAAAG
GGAAGGGTGTCAGAGGGACAGCGCGTAAAGGACGCTGAGGGTGTGCGGTA
CTGAGCCAGCGATGCTCCGTGTGAAATACCATTGTGTGCAAACACTTATA
AGTCGGAAAAGGCGACGACCCTTTGAGGGGCGCGAGCATGAAGCAAGTGA
TCATTTGTTTGGAGTACAGACCAGCCGGAAGATGATCGAAGGAAAGGAAG
AGCGAACAGGAAGAGCCGGGAAGCGTGCCATGTGCAGCCACGCTTGTCCC
CTCAACCATTTTCCACCGAGTTTTCATTTCCACGTCGGGGCGGGTCGCTT
TTTTCCCTCCGTGGTAAGCTGGCACAACATACAGGCGAATTCCAAGCCTC
GTCTCTCTTGGCAAAGAATCCATTCACACCGCTCCTTTCACATTTCGAAT
CCGAGCACGGCCATTGCGTGCATCCTGCGCAAAGACGACCGTTGTCAGGC
GATTCCCTAGCAACTCGTCCCTCCACTCATCCTGAACCTCCGTCATCCTT
CCCTTTCGGCAACCCATCCCGAACTCGCCTAACGCTGTCTCTTCTGCTCC
CTCGGATAGTGACAGTGAGGTACTAAGGATTACTTCCTTAGTACCTCACT
GCCAAGAACCCTCTTACCAGCTGTCTCGACATACCATCTTTCCTCATATC
TTCACGCGACCACCTGCATCAGATACTGAAGCTGAAACTACCAGACTACC
ATTTCCGCAGCCATAAGAGCATCGGATTGTCTCCGCGACATTTCTCTTCT
CTTCAAACTCTCAAATATAATTTTGGGCACTTCCGTGCACGGAACAGGCC
CCCTTCCTACCCCTCTCGATTTCCCTCGCCCCCTGCCTTTCAGCCTCGGG
CATCGCCTGTAGCTCCACCACGTCCTGGCCCTGGAGGTCCACGCCTTAAA
TTTCCACACATCACGTGGCCGCTCCACTTTCCCAGCTTTTCCTCCCTCGT
CCTCCCTTGTCCCGGCCCGGGGGTCGAGTCGGCTCATTGCCGAAATTGCT
GCTTGTCCAAGTCATCAAAGTACCGGTGGTACAGGGCGGTCTTCGCGCTA
ATCCGGCTCTTGGGATCAAGCACCACCAGTTTCTGCTCGAGGGGGTGCGT
GAAAAAATAGTGAGGGTGAGAGAGAGGGTCGAAAATAAGCAGACCTGCGA
TGCATTCCAGATCCAAAGACGACCGCGTGGAAGAGGCAGCGAGCACACCA
GAGGCCCTCGGGTCCCAGTTCTTCCTTGGTGCATGCGTCAAACACGGCTG
TGGGTCCGGGGCAATCTCCTACCTCCAGCAAATCCAAGCCCGCCTCATCT
ATGGAGGGGCAGTACTTGGTGAGCTTCACGGGGGGCCAGACGGGGAAGGC
CGGATTCCAGTCTTGGAGGGCCGTCACGCCGGGCCACGTCTCTTCGGAAG
GGGTGCCTAACGAGCGAAAAATCTAGGCGAGTGCG

Coding sequence (CDS) from alignment at CM002470.1:333952..336886-

>rna7056 ID=rna7056|Name=rna7056|organism=Nannochloropsis gaditana|type=CDS|length=858bp|location=Sequence derived from alignment at CM002470.1:333952..336886- (Nannochloropsis gaditana)
ATGCCCGGAGGGATCGACGCCGATGACAGAGGGTCTAGTGGAGACGATGG
GTCTGGAGGGTTTCTTCTCGTCCGGTGCCGGTGGAGGAGGGGGCGGGGGG
CGGGGGCGGGAGCGATGAGCGTGAAGCGCAAACAAGATCGGAACGCCCGG
GAGCAGAAGCGCTCCTTGAAGATCAGCCAGCAGATCGGTCACCTGAAGAG
CCTGCTGGAGGAGGAGGGGCGCAAGGTGAAGAAGAACAGCAAGATGGCGA
TCCTCCTGAGTGTGGAGGATTACATCAAGGAGCTGGAGGAGGAGGTGGGG
GGGATGGTGCTGGGCCGGGAGGGCGGGCGGGAGGAGGGGGAGGGAATGAA
GGAAGGGATGGACGTGGGCGTGGGCACAAGCGTGGAGGCCGCGGGCCAGA
GGAACGGCCGGAGCGAGAGCGATCTGTCCGTGGCGACGGCGACCTCGGTG
CGGGAGGACCAGGAGGTGGCGCGGGGCGTGGGCTACCACTCCCTTTTCAA
GCAGGTGAGCACCCCCTTGGCCGTGGCGTCGGTGGAGGGGCGATTCATCG
ACGCGAATGTGCGCTTTGAGATGGCCACAGGATACACCAAGGCGGAACTG
GGGCGCTTGACGTTCTTCAACCTGGTGGCTCCGGAAGAGCTGCAGGACAC
CTTTGCGGCCGTTGCCCGCATGCTTAACCAGCCGAGCGGGGGGGAAGAGG
AGAAGGAGGACTCGAAAATGCTGCGATTGACGAGGCGGGCCCTGCCCAAG
GTGGGGATCGGGGGCCTTGGCCAGGAGGCGCAGAATCTGCACATCACCAT
CTCTTTGGTGAAACCGCAGGAGGATTCGATGGCCTTTTTTCAGTGCAGCC
TGGACTGA

Synonyms

Publications