EWM23637.1, cds7039 (CDS) Nannochloropsis gaditana

Overview
NameEWM23637.1
Unique Namecds7039
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:335992..336849 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23637.1
Productpas-domain protein
Orig transcript idgnl|cribi|Naga_100165g4.9689.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:335992..336849 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR000014PAS
IPR011598bHLH_dom
Homology
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|585104789|gb|EWM23637.1| (pas-domain protein [Nannochloropsis gaditana])

HSP 1 Score: 573.548 bits (1477), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query:    1 MPGGIDADDRGSSGDDGSGGFLLVRCRWRRGRGAGAGAMSVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSLD 285
            MPGGIDADDRGSSGDDGSGGFLLVRCRWRRGRGAGAGAMSVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSLD
Sbjct:    1 MPGGIDADDRGSSGDDGSGGFLLVRCRWRRGRGAGAGAMSVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSLD 285          
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|960351367|gb|ALR84570.1| (bHLH transcription factor 1 [Nannochloropsis salina])

HSP 1 Score: 91.6633 bits (226), Expect = 3.751e-17
Identity = 69/255 (27.06%), Postives = 121/255 (47.45%), Query Frame = 0
Query:   42 KRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGRE----GGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVAT--------ATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSL 284
            ++K+ RN REQ+R+  I+ QI  LK +LE     ++  SK  IL + ++YI+ L +    + L  +    G      G  +    G+G   +++   +  SE + S ++          +    +E+   + +  +F+    P+AV S++GR +  NV F   TGYT  +L  +T F L APE L+  F ++AR+L+  +   +EK  +       RA P    G      +  +I +SLV+ +E     F C +
Sbjct:  380 RKKRLRNEREQRRAHLITDQIDSLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKLSGGGAGSPMTGFCKYNKAGIGVEGQSSSSVSSASEDNESTSSWGGVRGAAGGAAASQREIV--LDFSEIFRSSHVPMAVVSIDGRLLQCNVEFSRVTGYTNDKLAGVTLFGLAAPECLEQLFKSIARLLS--TAALDEKNPAYFATAAARATPFSHPG-----YKEANILLSLVRDEEHRARAFHCCI 625          
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|219116546|ref|XP_002179068.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409835|gb|EEC49766.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 90.1225 bits (222), Expect = 9.493e-17
Identity = 76/274 (27.74%), Postives = 124/274 (45.26%), Query Frame = 0
Query:   42 KRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAEL------------------------------GRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKED-SKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSL 284
            +R+ DRNAREQ+RS +I+ QI  LK++L E   + K + K + L++V DY+K L+E     +L +E  ++  + + +  ++  G  V A    +       S    T   E     RG+ Y ++F       A+A+++GRF+D N  FE  TGYT+ EL                                L+ F ++  + +QD F A+  ML +P  GE   +  S  + L R   P   +          +I +SLV+  + S  FF  +L
Sbjct:  234 RRRYDRNAREQQRSQQITVQIDVLKNVLTEANVQFKPD-KYSTLVTVVDYVKTLQER--STLLDQEH-KKLLDTISKTTEIVNGLYVPAESSSSDVLSGPCSRPEPTPEDETLVFVRGLDYKAVFAFCPFACAIANIDGRFLDCNQDFENITGYTRDELLPLEASSSDQHAYLTPLPTTSGDVIESTQPRNLSLFIVLNQDHMQDVFGAMRDMLRRPFPGEIRHDSWSHPVHLNR--FPDTLV----------NIKVSLVRTAQHSPRFFNVAL 491          
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|223999963|ref|XP_002289654.1| (pas-domain protein [Thalassiosira pseudonana CCMP1335] >gi|220974862|gb|EED93191.1| pas-domain protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 89.3521 bits (220), Expect = 2.903e-16
Identity = 61/190 (32.11%), Postives = 99/190 (52.11%), Query Frame = 0
Query:   38 AMSVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSV-ATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLN 226
            A + +R+ +RN RE++RS +I+ Q+  L+ LL+  G  + KN+K  +L    +YI+ L+E    M +       E EG+K  + V V   ++  G+  G ++   S  ATA S  +D        YH +FK     +AVAS+ G  +D N  F   TG +  EL  +T FN+V P +L      ++RM++
Sbjct:  382 ATTEERRLERNQREKERSNRIASQVDTLRCLLQRGGLFIPKNTKSTVLNEASNYIRTLQERQQLMSM-------EMEGLKRQLVVAVA--LKNGGEAGGAAQQATSQEATADSAEQD--------YHLIFKNTMAGMAVASMGGALLDCNAAFHGETGLSSEELKGMTVFNIVHPTDLSRALDLISRMID 554          
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|1072229424|gb|OEU14159.1| (HLH and PAS domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 85.5001 bits (210), Expect = 4.431e-15
Identity = 70/218 (32.11%), Postives = 104/218 (47.71%), Query Frame = 0
Query:   42 KRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELE-----------------EEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEV--ARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAE-LGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSK 239
            +R+ +RN REQ+RS KIS QI  L+ +L E     K N K +ILL V +YIK+L+                 ++   M+          E   E  D  +G   +    R+GR  S++      S   D E+   +G+ Y  LF Q  T + +A+++GR ++ N  F+   GYT  E L + + FNLV     QD F A+A+ML       +  EDSK
Sbjct:  363 RRRYERNLREQQRSSKISTQIKELREVLSECNVPFKPN-KYSILLKVVEYIKQLQSRAIMLDAEHQKLITTVQQTNEMITNTGKNNSNNENGGETSDTTMGIEND---WRHGRGTSEI----VGSPSRDSELYFVKGIDYRGLFDQCPTAMGIAALDGRILECNTEFQSLLGYTTHEDLLKQSLFNLV--HNHQDIFRAMAQML-------KTAEDSK 563          
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|223993223|ref|XP_002286295.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977610|gb|EED95936.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 83.9593 bits (206), Expect = 1.974e-14
Identity = 65/219 (29.68%), Postives = 107/219 (48.86%), Query Frame = 0
Query:   24 VRCRWRRGRG--AGAGAMSVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAG-QRNGRSESDLSVATATSVREDQEVARGVG--------------YHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARML 225
            VR   RRG G  +        ++Q+RNARE++RS +I++QI  L+SLL   G  V K +K ++L    +YI  L+++     + R+    +   M+E     VG + + A  Q+ G     +      S+ + Q+ A GV               Y  +F   S  +A+AS+ G FID N  F   + Y+K E+  +T FN+ A  +LQ  F  +++M+
Sbjct:  573 VRSAIRRGNGGKSHPATQDPTKRQERNAREKERSCRIAKQIDDLRSLLSRGGVVVAKGTKSSVLAEAANYINVLQQQQVQWEMDRQALVRQ---MQE-----VGATPDMAQIQQQG-----VMPMNPNSIAQVQQAASGVPGAMTMNPSTMGPNDYKFVFNNSSVGMAIASMGGAFIDCNENFCQLSEYSKEEVCAMTIFNMTARSDLQHAFELISQMI 778          
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|397619761|gb|EJK65393.1| (hypothetical protein THAOC_13749 [Thalassiosira oceanica])

HSP 1 Score: 82.4185 bits (202), Expect = 3.041e-14
Identity = 59/180 (32.78%), Postives = 93/180 (51.67%), Query Frame = 0
Query:   55 SLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEE-EVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVARGVG---YHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSG 230
            SLKI+QQI  L++LL   G  V K +K  IL    +YI+ L++ +V   V       E+G+ +KE   +G G   + A Q    S+       A S      +A  +G   Y  +F   S  +A+A++ G FID N+ F   + Y+K EL  +T FN+ + E+LQ  F  +++++  PSG
Sbjct:  109 SLKITQQIHELRNLLSLGGVIVPKGTKSTILTEAANYIRLLQQHQVRSEV-------EKGQLVKEVQRIGSGAIQQNAAQNGALSQGQAQQPQAPS----SGIADTLGDREYRCVFNSCSVGMAIATMGGSFIDCNLAFTQLSSYSKQELKAMTIFNITSREDLQGAFDMMSQLITPPSG 277          
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|1210519797|dbj|GAX21349.1| (hypothetical protein FisN_6Lh085 [Fistulifera solaris])

HSP 1 Score: 80.8777 bits (198), Expect = 1.206e-13
Identity = 70/251 (27.89%), Postives = 117/251 (46.61%), Query Frame = 0
Query:   40 SVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGRE----------GGREEGEGMKEGMDVGVGTSVEAAGQRNG--------RSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALP-KVGIGGLGQEAQNLHITISLVK 271
            S KRK+ RNARE++RS +I+++I  L+ LL   G  V K +K ++L     YI+ L++      + R+          GG    +       +     V + G   G         SE   S A++  ++ +Q     + Y   F      +A+AS+ G FID N  F   T YTK +L  LT FNL A ++LQ  F  ++ +++ P            ++L++ + P  V + G  +   +L +++SLVK
Sbjct:  178 SSKRKE-RNAREKERSFRIAKKINELRDLLSTGGVIVPKGTKSSVLTEAASYIRTLQQHQYRAEIDRQQLIQQMQMIGGGAHGPQAAAAIRQLAAQNGVWSLGNFGGVPPKPTMYPSEPKSSDASSGFLQANQ--LEPLDYRFFFNSCGIGMAIASMGGAFIDCNQLFTQLTEYTKQDLSSLTIFNLTARQDLQKAFDQISLLISPP------------MKLSKESPPANVVVRGSFKNRPDLGLSVSLVK 413          
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|1072228674|gb|OEU13409.1| (hypothetical protein FRACYDRAFT_241747 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 80.4925 bits (197), Expect = 1.852e-13
Identity = 65/215 (30.23%), Postives = 98/215 (45.58%), Query Frame = 0
Query:   17 GSGGFLLVRCRWRRGRGAGAGAMSV--------KRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELE---------------------EEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVA--RGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAEL 200
            G+GG    R   +R R   + +M+V        KR+ DRN REQKRS KI++QI  L+ +L     + K + K + L+SV +Y+K+L+                     E V    L        G     G      TS+ A        + D +V++ + +  D E+A  R V Y  +F +   PLAVAS++GR +D N  F   T Y++ EL
Sbjct:  180 GTGGTSSSR---KRSRQKESSSMAVSDSEDEGSKRRSDRNLREQKRSQKITEQIDQLREVLAAASVRFKPD-KFSTLISVVEYVKQLQTRSTMLDTEHKNLLDTISRTNEMVNESYLPASATGGGGSSHSSGNKTDCDTSLNA--------QPDSAVSSGSDIYNDDEMAFVRNVDYRCIFDKCGVPLAVASIDGRLLDCNDEFLQLTQYSRKEL 382          
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|1210518067|dbj|GAX22998.1| (hypothetical protein FisN_15Hh105 [Fistulifera solaris])

HSP 1 Score: 80.1073 bits (196), Expect = 2.590e-13
Identity = 61/204 (29.90%), Postives = 104/204 (50.98%), Query Frame = 0
Query:   40 SVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGG------REEGEGMKEGMDVGVGTSVEAAG---------QRNGRS-ESDLSVA-TATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTK-AELGRLTFFNLVAPEELQDTFAAVARML 225
            S KR+ +RN +EQ+RS +ISQQI  L+ +L E     K N K +IL+SV +YI++L+ +   ++L  +        R+  E    G +    +S+ AAG           N  S + DL  +    S+ +D  + + + Y  +F     P A+AS++GR +  N +F  + G T  A+L + + F  +  +  Q+ F A+A +L
Sbjct:  203 SSKRRYERNLKEQQRSHQISQQIKQLRDVLTEANVSFKSN-KFSILVSVSEYIQQLQSQ--AIMLDADYQRLVQTIRQTQEASVAGDEALAPSSMSAAGVSSEDSQSRSSNFNSGQKDLYYSYNCPSLNDDGPLTQSIDYEQIFLHCPYPWALASLDGRLLCCNPKFAESVGATNHAQLVQQSLFLFI--QNHQEIFEAMADLL 401          
The following BLAST results are available for this feature:
BLAST of EWM23637.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104789|gb|EWM23637.1|0.000e+0100.00pas-domain protein [Nannochloropsis gaditana][more]
gi|960351367|gb|ALR84570.1|3.751e-1727.06bHLH transcription factor 1 [Nannochloropsis salin... [more]
gi|219116546|ref|XP_002179068.1|9.493e-1727.74predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223999963|ref|XP_002289654.1|2.903e-1632.11pas-domain protein [Thalassiosira pseudonana CCMP1... [more]
gi|1072229424|gb|OEU14159.1|4.431e-1532.11HLH and PAS domain-containing protein [Fragilariop... [more]
gi|223993223|ref|XP_002286295.1|1.974e-1429.68predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397619761|gb|EJK65393.1|3.041e-1432.78hypothetical protein THAOC_13749 [Thalassiosira oc... [more]
gi|1210519797|dbj|GAX21349.1|1.206e-1327.89hypothetical protein FisN_6Lh085 [Fistulifera sola... [more]
gi|1072228674|gb|OEU13409.1|1.852e-1330.23hypothetical protein FRACYDRAFT_241747 [Fragilario... [more]
gi|1210518067|dbj|GAX22998.1|2.590e-1329.90hypothetical protein FisN_15Hh105 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7056rna7056Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications