EWM23637.1, cds7039 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|585104789|gb|EWM23637.1| (pas-domain protein [Nannochloropsis gaditana]) HSP 1 Score: 573.548 bits (1477), Expect = 0.000e+0 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query: 1 MPGGIDADDRGSSGDDGSGGFLLVRCRWRRGRGAGAGAMSVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSLD 285
MPGGIDADDRGSSGDDGSGGFLLVRCRWRRGRGAGAGAMSVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSLD
Sbjct: 1 MPGGIDADDRGSSGDDGSGGFLLVRCRWRRGRGAGAGAMSVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSLD 285
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|960351367|gb|ALR84570.1| (bHLH transcription factor 1 [Nannochloropsis salina]) HSP 1 Score: 91.6633 bits (226), Expect = 3.751e-17 Identity = 69/255 (27.06%), Postives = 121/255 (47.45%), Query Frame = 0
Query: 42 KRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGRE----GGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVAT--------ATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSL 284
++K+ RN REQ+R+ I+ QI LK +LE ++ SK IL + ++YI+ L + + L + G G + G+G +++ + SE + S ++ + +E+ + + +F+ P+AV S++GR + NV F TGYT +L +T F L APE L+ F ++AR+L+ + +EK + RA P G + +I +SLV+ +E F C +
Sbjct: 380 RKKRLRNEREQRRAHLITDQIDSLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKLSGGGAGSPMTGFCKYNKAGIGVEGQSSSSVSSASEDNESTSSWGGVRGAAGGAAASQREIV--LDFSEIFRSSHVPMAVVSIDGRLLQCNVEFSRVTGYTNDKLAGVTLFGLAAPECLEQLFKSIARLLS--TAALDEKNPAYFATAAARATPFSHPG-----YKEANILLSLVRDEEHRARAFHCCI 625
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|219116546|ref|XP_002179068.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409835|gb|EEC49766.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 90.1225 bits (222), Expect = 9.493e-17 Identity = 76/274 (27.74%), Postives = 124/274 (45.26%), Query Frame = 0
Query: 42 KRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAEL------------------------------GRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKED-SKMLRLTRRALPKVGIGGLGQEAQNLHITISLVKPQEDSMAFFQCSL 284
+R+ DRNAREQ+RS +I+ QI LK++L E + K + K + L++V DY+K L+E +L +E ++ + + + ++ G V A + S T E RG+ Y ++F A+A+++GRF+D N FE TGYT+ EL L+ F ++ + +QD F A+ ML +P GE + S + L R P + +I +SLV+ + S FF +L
Sbjct: 234 RRRYDRNAREQQRSQQITVQIDVLKNVLTEANVQFKPD-KYSTLVTVVDYVKTLQER--STLLDQEH-KKLLDTISKTTEIVNGLYVPAESSSSDVLSGPCSRPEPTPEDETLVFVRGLDYKAVFAFCPFACAIANIDGRFLDCNQDFENITGYTRDELLPLEASSSDQHAYLTPLPTTSGDVIESTQPRNLSLFIVLNQDHMQDVFGAMRDMLRRPFPGEIRHDSWSHPVHLNR--FPDTLV----------NIKVSLVRTAQHSPRFFNVAL 491
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|223999963|ref|XP_002289654.1| (pas-domain protein [Thalassiosira pseudonana CCMP1335] >gi|220974862|gb|EED93191.1| pas-domain protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 89.3521 bits (220), Expect = 2.903e-16 Identity = 61/190 (32.11%), Postives = 99/190 (52.11%), Query Frame = 0
Query: 38 AMSVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSV-ATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLN 226
A + +R+ +RN RE++RS +I+ Q+ L+ LL+ G + KN+K +L +YI+ L+E M + E EG+K + V V ++ G+ G ++ S ATA S +D YH +FK +AVAS+ G +D N F TG + EL +T FN+V P +L ++RM++
Sbjct: 382 ATTEERRLERNQREKERSNRIASQVDTLRCLLQRGGLFIPKNTKSTVLNEASNYIRTLQERQQLMSM-------EMEGLKRQLVVAVA--LKNGGEAGGAAQQATSQEATADSAEQD--------YHLIFKNTMAGMAVASMGGALLDCNAAFHGETGLSSEELKGMTVFNIVHPTDLSRALDLISRMID 554
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|1072229424|gb|OEU14159.1| (HLH and PAS domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 85.5001 bits (210), Expect = 4.431e-15 Identity = 70/218 (32.11%), Postives = 104/218 (47.71%), Query Frame = 0
Query: 42 KRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELE-----------------EEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEV--ARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAE-LGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSK 239
+R+ +RN REQ+RS KIS QI L+ +L E K N K +ILL V +YIK+L+ ++ M+ E E D +G + R+GR S++ S D E+ +G+ Y LF Q T + +A+++GR ++ N F+ GYT E L + + FNLV QD F A+A+ML + EDSK
Sbjct: 363 RRRYERNLREQQRSSKISTQIKELREVLSECNVPFKPN-KYSILLKVVEYIKQLQSRAIMLDAEHQKLITTVQQTNEMITNTGKNNSNNENGGETSDTTMGIEND---WRHGRGTSEI----VGSPSRDSELYFVKGIDYRGLFDQCPTAMGIAALDGRILECNTEFQSLLGYTTHEDLLKQSLFNLV--HNHQDIFRAMAQML-------KTAEDSK 563
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|223993223|ref|XP_002286295.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977610|gb|EED95936.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 83.9593 bits (206), Expect = 1.974e-14 Identity = 65/219 (29.68%), Postives = 107/219 (48.86%), Query Frame = 0
Query: 24 VRCRWRRGRG--AGAGAMSVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAG-QRNGRSESDLSVATATSVREDQEVARGVG--------------YHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARML 225
VR RRG G + ++Q+RNARE++RS +I++QI L+SLL G V K +K ++L +YI L+++ + R+ + M+E VG + + A Q+ G + S+ + Q+ A GV Y +F S +A+AS+ G FID N F + Y+K E+ +T FN+ A +LQ F +++M+
Sbjct: 573 VRSAIRRGNGGKSHPATQDPTKRQERNAREKERSCRIAKQIDDLRSLLSRGGVVVAKGTKSSVLAEAANYINVLQQQQVQWEMDRQALVRQ---MQE-----VGATPDMAQIQQQG-----VMPMNPNSIAQVQQAASGVPGAMTMNPSTMGPNDYKFVFNNSSVGMAIASMGGAFIDCNENFCQLSEYSKEEVCAMTIFNMTARSDLQHAFELISQMI 778
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|397619761|gb|EJK65393.1| (hypothetical protein THAOC_13749 [Thalassiosira oceanica]) HSP 1 Score: 82.4185 bits (202), Expect = 3.041e-14 Identity = 59/180 (32.78%), Postives = 93/180 (51.67%), Query Frame = 0
Query: 55 SLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEE-EVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVARGVG---YHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSG 230
SLKI+QQI L++LL G V K +K IL +YI+ L++ +V V E+G+ +KE +G G + A Q S+ A S +A +G Y +F S +A+A++ G FID N+ F + Y+K EL +T FN+ + E+LQ F +++++ PSG
Sbjct: 109 SLKITQQIHELRNLLSLGGVIVPKGTKSTILTEAANYIRLLQQHQVRSEV-------EKGQLVKEVQRIGSGAIQQNAAQNGALSQGQAQQPQAPS----SGIADTLGDREYRCVFNSCSVGMAIATMGGSFIDCNLAFTQLSSYSKQELKAMTIFNITSREDLQGAFDMMSQLITPPSG 277
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|1210519797|dbj|GAX21349.1| (hypothetical protein FisN_6Lh085 [Fistulifera solaris]) HSP 1 Score: 80.8777 bits (198), Expect = 1.206e-13 Identity = 70/251 (27.89%), Postives = 117/251 (46.61%), Query Frame = 0
Query: 40 SVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGRE----------GGREEGEGMKEGMDVGVGTSVEAAGQRNG--------RSESDLSVATATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAELGRLTFFNLVAPEELQDTFAAVARMLNQPSGGEEEKEDSKMLRLTRRALP-KVGIGGLGQEAQNLHITISLVK 271
S KRK+ RNARE++RS +I+++I L+ LL G V K +K ++L YI+ L++ + R+ GG + + V + G G SE S A++ ++ +Q + Y F +A+AS+ G FID N F T YTK +L LT FNL A ++LQ F ++ +++ P ++L++ + P V + G + +L +++SLVK
Sbjct: 178 SSKRKE-RNAREKERSFRIAKKINELRDLLSTGGVIVPKGTKSSVLTEAASYIRTLQQHQYRAEIDRQQLIQQMQMIGGGAHGPQAAAAIRQLAAQNGVWSLGNFGGVPPKPTMYPSEPKSSDASSGFLQANQ--LEPLDYRFFFNSCGIGMAIASMGGAFIDCNQLFTQLTEYTKQDLSSLTIFNLTARQDLQKAFDQISLLISPP------------MKLSKESPPANVVVRGSFKNRPDLGLSVSLVK 413
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|1072228674|gb|OEU13409.1| (hypothetical protein FRACYDRAFT_241747 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 80.4925 bits (197), Expect = 1.852e-13 Identity = 65/215 (30.23%), Postives = 98/215 (45.58%), Query Frame = 0
Query: 17 GSGGFLLVRCRWRRGRGAGAGAMSV--------KRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELE---------------------EEVGGMVLGREGGREEGEGMKEGMDVGVGTSVEAAGQRNGRSESDLSVATATSVREDQEVA--RGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTKAEL 200
G+GG R +R R + +M+V KR+ DRN REQKRS KI++QI L+ +L + K + K + L+SV +Y+K+L+ E V L G G TS+ A + D +V++ + + D E+A R V Y +F + PLAVAS++GR +D N F T Y++ EL
Sbjct: 180 GTGGTSSSR---KRSRQKESSSMAVSDSEDEGSKRRSDRNLREQKRSQKITEQIDQLREVLAAASVRFKPD-KFSTLISVVEYVKQLQTRSTMLDTEHKNLLDTISRTNEMVNESYLPASATGGGGSSHSSGNKTDCDTSLNA--------QPDSAVSSGSDIYNDDEMAFVRNVDYRCIFDKCGVPLAVASIDGRLLDCNDEFLQLTQYSRKEL 382
BLAST of EWM23637.1 vs. NCBI_GenBank
Match: gi|1210518067|dbj|GAX22998.1| (hypothetical protein FisN_15Hh105 [Fistulifera solaris]) HSP 1 Score: 80.1073 bits (196), Expect = 2.590e-13 Identity = 61/204 (29.90%), Postives = 104/204 (50.98%), Query Frame = 0
Query: 40 SVKRKQDRNAREQKRSLKISQQIGHLKSLLEEEGRKVKKNSKMAILLSVEDYIKELEEEVGGMVLGREGG------REEGEGMKEGMDVGVGTSVEAAG---------QRNGRS-ESDLSVA-TATSVREDQEVARGVGYHSLFKQVSTPLAVASVEGRFIDANVRFEMATGYTK-AELGRLTFFNLVAPEELQDTFAAVARML 225
S KR+ +RN +EQ+RS +ISQQI L+ +L E K N K +IL+SV +YI++L+ + ++L + R+ E G + +S+ AAG N S + DL + S+ +D + + + Y +F P A+AS++GR + N +F + G T A+L + + F + + Q+ F A+A +L
Sbjct: 203 SSKRRYERNLKEQQRSHQISQQIKQLRDVLTEANVSFKSN-KFSILVSVSEYIQQLQSQ--AIMLDADYQRLVQTIRQTQEASVAGDEALAPSSMSAAGVSSEDSQSRSSNFNSGQKDLYYSYNCPSLNDDGPLTQSIDYEQIFLHCPYPWALASLDGRLLCCNPKFAESVGATNHAQLVQQSLFLFI--QNHQEIFEAMADLL 401 The following BLAST results are available for this feature:
BLAST of EWM23637.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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