rna7045, rna7045 (mRNA) Nannochloropsis gaditana

Overview
Namerna7045
Unique Namerna7045
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length549
Alignment locationCM002470.1:313402..314850 +

Link to JBrowse

Properties
Property NameValue
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_100165g16.9697.mrna
Orig protein idgnl|cribi|Naga_100165g16.9697
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:313402..314850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100165g16gene6811Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7045rna7045-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23645.1cds7028Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7045 ID=rna7045|Name=rna7045|organism=Nannochloropsis gaditana|type=mRNA|length=549bp
ATGGCAGGTATACCCGCTACCATGGTGGCACCGACCGCCATAGAAGGAGA
AATTTCGGAGCAGCAGCTGGTCCAGGAGCGGCATCTTGCAGCAGAGGCGT
CAAGCCTAGTAGATGGGGAAGAACAAGAGCAGGAAACAGGGCAGATTAGT
CAGCTAGAAACTACCAATCAACATGACAAGGACGATGGCAATGGCATCTC
GGGCGAGAAAGAGGCACCGACCGCAGCCACCGTAAGCAAGAGTCCGGAAT
TTGAGCCGCCCCTGTCCAGCGTCACCAAAATCATTCGACGGGCAGTAGGG
GACAGCGTGCAGGTCGGCAAGGAGGCGAAGGCGACTTTCACGCGCGTGGC
CGGCATATTTATCCTGTACATCACGGCCTGTGCGAACGACTTCTCAAGGG
AAGGGAAACGGGCGACCATAACTGCCAACGACGTGTACCAGGCTTTGAAG
GAGTTGGAATTCGAAGACATGGTCGAGCCTCTACAAGAATTCTTGCGCCG
AGGAGGAAGTGGGCGACAGCGGAGGCGAGAAAGAGGACTCTACCACTGA
back to top

protein sequence of rna7045

>rna7045-protein ID=rna7045-protein|Name=rna7045|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MAGKYPHLDPRQLCVFITGATAGFGQATALRFLAGGARVVALGRRAERLE
ALARLHQEQEHGSGEGPRGESERLHTIQADVGDVEGMKAALGALPPAFRD
VDVLVNNAGFAAGLGLAHESSLEDWHAMVETNIKGVLNTTHLLLPGMVAR
KRGHVVMMGSVASRYPYPGGNCYGGTKAFVHQFAMNLRADLAGTNVRVTN
VLPGMCETEFSLVRFKGDEARAKKVYDGMTPLTAEDIAEVVYWTTTLPAH
VNVNALEIMPVQQAFAPFAVSRRSPSPLSKGKADKEDS
back to top

mRNA from alignment at CM002470.1:313402..314850+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7045 ID=rna7045|Name=rna7045|organism=Nannochloropsis gaditana|type=mRNA|length=1449bp|location=Sequence derived from alignment at CM002470.1:313402..314850+ (Nannochloropsis gaditana)
gggggggtgatGGATACAGCGAACTAGAGATCTAAGCGAGAAGTTAGTGC
TCGGCAAAGAATGTTACAGTATGGCTGGTTGAATGAAAAAGGGGCTCTGC
CTGTGTCTGTCGCTGGTTGGAGTATCTTTTACCGACCTTGGCCGTTACGT
TGCTTCTACCGTTGCGGGCACCCGGCAACTAAAGTTGGCAAAATCGAGCT
AAACGAGAAAGCATGGGCGGCCGGAAGGGCCGCAAGAGCCGCCGAAAGAA
GTTATTTATGGCCGCATTGTTAGTCACGAGGCGACCCCGCGTCCGctttg
ccttctctccccgcctccacatTCTCAAgcgctcctttcctttcttcccc
caccccgcccaggccgcttcctcccaacATGGCCGGTAAGTACCCGCACC
TGGACCCCCGTCAGCTCTGCGTCTTCATCACGGGCGCCACCGCGGGCTTC
GGGCAAGCGACTGCCCTTCGTTTTCTGGCGGGCGGGGCCAGGGTCGTCGC
CCTGGGCCGGCGCGCGGAACGCCTCGAAGCCTTGGCTCGCCTTCATCAAG
AGCAAGAGCATGGTTCCGGGGAGGGTCCCCGGGGCGAGAGCGAGCGGTTG
CACACCATCCAAGCGGATGTGggggatgtggaggggatgaaggctGCCCt
gggggccctcccccccgccttccggGACGTGGACGTGCTCGTCAACAATG
CCGGTTTCGCCGCGGGACTGGGCCTGGCTCATGAGAGCAGCTTGGAAGAC
TGGCACGCCATGGTGGAGACGAACATAAAGGGCGTGCTCAACACCACGCA
CTTGCTGCTCCCGGGTATGGTGGCGCGGAAAAGGGGACACGTAGTCATGA
TGGGCAGCGTGGCCTCCCGCTATCCCTACCCCGGAGGGAACTGCTACGGG
GGCACCAAAGCCTTTGTCCACCAGTTCGCCATGAATCTGCGGGCGGATCT
GGCGGGGACGAACGTGCGTGTGACTAACGTGCTGCCGGGCATGTGCGAGA
CCGAGTTCAGCCTGGTTCGCTTCAAAGGCGACGAGGCGCGGGCTAAGAAA
GTGTACGATGGCATGACGCCCTTGACGGCGGAGGACATCGCAGAGGTAGT
GTACTGGACGACTACACTGCCGGCTCACGTGAACGTAAATGCGCTCGAAA
TCATGCCGGTACAGCAAGCTTTCGCCCCTTTTGCCGTGTCGCGAAGAAGT
CCATCTCCCTTgtcaaaggggaaggcagacAAAGAGGATTCTTGAAATAA
TTTCCAAAGCcttggcgaagaaggagggttggATTAATGTACTTCATGGG
TTGTAAGGGAAATAGGAAGAAATGGGACGGCCGTGGAACTACCGGGCGTC
CGACAAAAAGTTGACCGTCCACAGGCAAGCTCGGCGGCGAATGGAGTTTG
TAAGCTATTGAAGTTTTTAATAAAATAAGCCGCCATGCCTGTAGTACTG
back to top

Coding sequence (CDS) from alignment at CM002470.1:313402..314850+

>rna7045 ID=rna7045|Name=rna7045|organism=Nannochloropsis gaditana|type=CDS|length=867bp|location=Sequence derived from alignment at CM002470.1:313402..314850+ (Nannochloropsis gaditana)
ATGGCCGGTAAGTACCCGCACCTGGACCCCCGTCAGCTCTGCGTCTTCAT
CACGGGCGCCACCGCGGGCTTCGGGCAAGCGACTGCCCTTCGTTTTCTGG
CGGGCGGGGCCAGGGTCGTCGCCCTGGGCCGGCGCGCGGAACGCCTCGAA
GCCTTGGCTCGCCTTCATCAAGAGCAAGAGCATGGTTCCGGGGAGGGTCC
CCGGGGCGAGAGCGAGCGGTTGCACACCATCCAAGCGGATGTGggggatg
tggaggggatgaaggctGCCCtgggggccctcccccccgccttccggGAC
GTGGACGTGCTCGTCAACAATGCCGGTTTCGCCGCGGGACTGGGCCTGGC
TCATGAGAGCAGCTTGGAAGACTGGCACGCCATGGTGGAGACGAACATAA
AGGGCGTGCTCAACACCACGCACTTGCTGCTCCCGGGTATGGTGGCGCGG
AAAAGGGGACACGTAGTCATGATGGGCAGCGTGGCCTCCCGCTATCCCTA
CCCCGGAGGGAACTGCTACGGGGGCACCAAAGCCTTTGTCCACCAGTTCG
CCATGAATCTGCGGGCGGATCTGGCGGGGACGAACGTGCGTGTGACTAAC
GTGCTGCCGGGCATGTGCGAGACCGAGTTCAGCCTGGTTCGCTTCAAAGG
CGACGAGGCGCGGGCTAAGAAAGTGTACGATGGCATGACGCCCTTGACGG
CGGAGGACATCGCAGAGGTAGTGTACTGGACGACTACACTGCCGGCTCAC
GTGAACGTAAATGCGCTCGAAATCATGCCGGTACAGCAAGCTTTCGCCCC
TTTTGCCGTGTCGCGAAGAAGTCCATCTCCCTTgtcaaaggggaaggcag
acAAAGAGGATTCTTGA
back to top
Synonyms
Publications