rna7043, rna7043 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7043
Unique Name	rna7043
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1670
Alignment location	CM002470.1:309880..311941 -

Link to JBrowse

Properties


Property Name	Value
Product	DNA repair protein Sae2/CtIP
Orig transcript id	gnl\|cribi\|Naga_100191g2.7762.mrna
Orig protein id	gnl\|cribi\|Naga_100191g2.7762
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:309880..311941 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100191g2	gene6809	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7043	rna7043-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23652.1	cds7026	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:309880..311941-
coding sequence from alignment at CM002470.1:309880..311941-

mRNA sequence

>rna7043 ID=rna7043|Name=rna7043|organism=Nannochloropsis gaditana|type=mRNA|length=1670bp
CGCTCCTACGAAGAGTCGCCCACAAGCCTGATTGCACTGCCAAGCCCACC
GCGACCCGACACCCTTTGTCACCTCCACGTCCGCACCATACCAACAGGAT
GCCACGATCTTACCGCCCTGCTATTTTCTGGCTCCTGCTGGCAGTGGCGC
TGCCGGTATGCCCCTCTACCGCCGCGTTTGCCTGGCACAGCATCCGACCT
CCTACCGAGCTTACAGCAGACTCACCTCGGTACCCCTCCTCGATCTCATG
CTCCAGAGGCTCGACCCATCGCTTTGCGGACCGAAGAAGAGATCAACGGA
TAAATTCAGACCTGATGAAGTCATCGCCATCTAAAGCGGCCCCTAGTGCA
TTTTGCAAGTTTTCTCCGCTGCTATTCGGCTTCCTTCCTGTCCTGGCTCC
AGCTGCCGCGTCCTTCACCCCGACCCCCGCCCATGCCGTGTCAGCCCCCG
TCGCGGTGTCTTTTTCAATTATCTCGACAAAAGGGCCGACAGCTTTGGTA
GCAGCGACGGACATGGTACTGAAAGAGGATGAAATGAAGGCTGATGGAGA
AGAGGTGCAGCGCTTGATGGGTCGAGTTGAGCCGATAGACCGGCTGGGAC
AGGAAGCTGAAGGCATTTTCAAGCGGGCTCGCATTGCTGAGGCGGACAAT
GAATTCGAGAAGGCGCTGCGCCTCTATGACAGGGTGACCCGGGTGGCCCC
CGGATACGCCTACGCCTGGAGCAACAAGGGCAATGCCTACATCGCCCTGG
GCGACCTGGAGAAGGGCCTCGACTCCTATAGCCGAGCCGTCGAGCTCCTC
CCCTCCAAGACGGGGGACGCCTGGCTGGTGTACCTGAACAAAGCGACCAC
AGAGCTGGCACTTGATAGGCTGGATGCGGCTATTCAGGACCTGGATTTGG
CCCGCGTCCTCCGCGGCCAGCCGGACATGCTCCTCTTCGCGAACAAGGGA
CTGGCCCTGGAGCGGAAGGGAGACCTGGCGCAGGCCTTGGAGAACTACGA
GTTTGCGGTGCTGACCAAGCCCAAAGACGTCCAGCCGTGGTGGCTGAGGT
ACTCCATGGTGCTCTTCCAGGAGCAGCAAGACATCAAGGCCATGGAGGTC
ATGCGGAAGGTGGTGGGGAAATTCGGGCGCGTGGAAGAGACCAAGGTGGC
GCTGGCGAGTAAGTGTCTGGGGGTGGGCTGGGGCCGAGGAAGGGAGCGTG
GTCAGATGACGCTCCGACTCTCGTTTTAGTCTGAGTTTGAAAATTGTGGG
AAGCAAGAGCGGAGAATAGGGTAGGGGCTAGCGCCAGGGGCACTGTAAGG
GTAGCGGCTGCCGAACCCCTCGTGTTCTTGCCTCTCACACCTTTCCCTTG
TGCCTGACAGCCCTGGTCTACGCATACGGCGACAAAAACGAAGCTGAACG
GATGTGGAGCGAGCTGAGCGGGCAGACTCAGTACAAGTATAGGGACGAGG
ATTTCCTTCGCTCGAAGCTCCGTTGGCCCTCACGGATGATCTCGACACTG
AGGGACTTCAAGGGACTTTATACTCCCAGAGCGTAGGCGGATGAGGGCGC
TGGGGCGACGGGATTGGGTGGCTGGCGGAAGATGGTGTGAAGTGGACTTA
CTAAGAACTGGGTTAGAAACGTGGCGTAGGCGCCTGAAGGGAAAGAAGTC
ATCTGTAACTTAGTCACTCC

protein sequence of rna7043

>rna7043-protein ID=rna7043-protein|Name=rna7043|organism=Nannochloropsis gaditana|type=polypeptide|length=533bp
MTESTCQQSVAGLDNALEELCKFRRQLEEERRTELQRAQEKDALLETQQS
QIEELREENELLRQKNARQAEKMRMVMKAIKRVSGDGVPRGMPEQQCPEE
TASESSGQTSVGICSRTIDGSHGIKWSGGEGTPAGVHSSCSQGLPVAPSS
RSKLRETQSKRELGAHEHFSRAKKEGGKNAMAVHVKCPPSKGDELVMADH
AEHVFKPNFKIQPQTKECVPKGAVKGGGRVERGWLKEPRLPLADMGNAPY
AERPGAAAAPVSAGLASSVRGSKDEFEQASSPSLVSRPRGTASPSHPGGA
GLPFMLSCPGAHGGDEDSGSGGRDNAREEEVESEELLANAGSEQLQRIQE
PLRRGLKRRPWERPRPSARPTSRPELSVHSRDRGPASTTCVSPSPSAMLS
EPAAALGLRVVTGAGGRKQISPGSHCPPSPRGASKPQSSLPSPTGPIKAA
HKVPQPQQHQQHRSVQVVRSRETRMALPAYACPECSGFLDAVGDLFDREQ
ILKKCSRHRHAHKPYETPEGFWDLSFPDSQDKH

mRNA from alignment at CM002470.1:309880..311941-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7043 ID=rna7043|Name=rna7043|organism=Nannochloropsis gaditana|type=mRNA|length=2062bp|location=Sequence derived from alignment at CM002470.1:309880..311941- (Nannochloropsis gaditana)
TTTCCACACGTCATCGCTGCTGCCACATCTACACACGGACAGGAAGCAAT
TAACGAACTATCTAAGCGCGAAAACACGGGATCAAGCCCTGACTTTTTCC
TTTACCCTCCCGCGGCCTGTCTGCCGCCTGGTCCTAATTCCTGTTTCCCA
TGACCGAGTCGACCTGCCAACAGAGCGTGGCCGGCCTCGATAACGCATTA
GAAGAGTTGTGCAAATTTCGAAGACAGCTAGAAGAAGAACGCAGAACTGA
ACTTCAAAGAGCACAGGAAAAGGACGCCTTATTGGAGGTAAGTCGTACAA
CATCCATCGGGGACATGTAGTGTTTCTTTCATCTTATGCTCGCCTTCAAC
AGACACAACAAAGTCAGATAGAGGAGTTGCGAGAAGAGAATGAGTTATTG
AGACAGAAAAATGCCAGGCAGGCTGAGAAGATGCGTATGGTCATGAAAGC
GATCAAGCGAGTGTCGGGCGACGGTGTCCCAAGGGGAATGCCCGAGCAAC
AGTGCCCGGAGGAAACCGCATCTGAGAGCAGCGGGCAGACAAGCGTAGGG
ATATGCTCAAGAACTATTGACGGGTCGCATGGCATTAAATGGAGCGGTGG
AGAAGGCACGCCGGCAGGTGTACACTCATCCTGTAGCCAAGGTCTTCCAG
TCGCTCCCTCTTCCCGATCCAAACTGCGGGAGACTCAGTCAAAGCGGGAG
CTTGGGGCCCATGAGCACTTTTCGCGGGCAAAGAAAGAAGGGGGAAAGAA
CGCAATGGCGGTTCATGTCAAATGTCCGCCCTCGAAGGGAGATGAGCTGG
TCATGGCAGACCACGCAGAGCACGTATTCAAACCAAACTTCAAAATCCAG
CCCCAGACAAAGGAATGCGTCCCCAAAGGAGCGGTGAAGGGTGGTGGAAG
GGTCGAGCGGGGCTGGTTGAAGGAGCCGCGCTTGCCTTTAGCGGACATGG
GGAATGCACCCTACGCCGAAAGACCCGGTGCGGCCGCCGCCCCCGTGTCG
GCTGGCCTCGCCTCTTCTGTCAGAGGCAGCAAGGACGAGTTTGAGCAAGC
CTCTAGCCCCTCGTTGGTATCGAGACCCCGTGGGACTGCTTCCCCTTCTC
ATCCGGGGGGTGCTGGGCTCCCATTCATGCTCTCCTGCCCTGGCGCACAC
GGGGGGGACGAGGATAGTGGGAGTGGAGGAAGGGACAATGCACGGGAAGA
AGAGGTAGAAAGCGAAGAGCTCTTGGCAAACGCGGGGTCAGAACAATTAC
AGCGCATCCAAGAGCCGCTCAGGAGGGGCCTGAAGCGTAGACCCTGGGAG
CGTCCCCGGCCCTCAGCCCGACCAACGTCCAGGCCCGAGCTAAGTGTTCA
CTCTCGAGACCGCGGCCCGGCGTCGACAACCTGCGTGTCTCCCTCGCCGT
CGGCCATGCTCTCGGAGCCGGCGGCGGCGCTCGGTCTCCGCGTGGTCACT
GGGGCGGGAGGGAGGAAGCAGATTTCGCCAGGCAGTCATTGCCCTCCGTC
CCCGCGGGGCGCCAGCAAGCCTCAGTCAAGCCTTCCATCGCCCACAGGTC
CAATCAAAGCGGCGCATAAGGTGCCACAACCGCAGCAGCACCAGCAGCAT
CGCTCCGTCCAAGTCGTCCGAAGCCGCGAGACTCGCATGGCCTTGCCCGC
ATACGCATGCCCGGAATGCTCGGGCTTTTTGGACGCCGTCGGGGATCTCT
TCGATCGGGAACAGATCTTGAAGAAGTGCTCTCGACACCGACATGCGCAC
AAGCCCTACGAGACGCCGGAGGGCTTCTGGGACCTGTCCTTTCCGGACTC
CCAGGACAAGCACTGACAGAAGGGACTGATCCTCTGGTTCCCATGCCCTT
TCTTTTTTTCGGTGCAAGCCAATTTGCTGTCACTGTGTGGAGATCAGGGA
CCTCGTCTGCTCTCAAAGGAAAAGGGTCCAGGGTGAATGATGCGCGGGAC
AAAAAGGAATGAGATATGTGTGTCAAAAAGCAATCGAGACATGGAGTGAC
TAAGTTACAGATGACTTCTTTCCCTTCAGGCGCCTACGCCACGTTTCTAA
CCCAGTTCTTAG

Coding sequence (CDS) from alignment at CM002470.1:309880..311941-

>rna7043 ID=rna7043|Name=rna7043|organism=Nannochloropsis gaditana|type=CDS|length=3204bp|location=Sequence derived from alignment at CM002470.1:309880..311941- (Nannochloropsis gaditana)
ACACAACAAAGTCAGATAGAGGAGTTGCGAGAAGAGAATGAGTTATTGAG
ACAGAAAAATGCCAGGCAGGCTGAGAAGATGCGTATGGTCATGAAAGCGA
TCAAGCGAGTGTCGGGCGACGGTGTCCCAAGGGGAATGCCCGAGCAACAG
TGCCCGGAGGAAACCGCATCTGAGAGCAGCGGGCAGACAAGCGTAGGGAT
ATGCTCAAGAACTATTGACGGGTCGCATGGCATTAAATGGAGCGGTGGAG
AAGGCACGCCGGCAGGTGTACACTCATCCTGTAGCCAAGGTCTTCCAGTC
GCTCCCTCTTCCCGATCCAAACTGCGGGAGACTCAGTCAAAGCGGGAGCT
TGGGGCCCATGAGCACTTTTCGCGGGCAAAGAAAGAAGGGGGAAAGAACG
CAATGGCGGTTCATGTCAAATGTCCGCCCTCGAAGGGAGATGAGCTGGTC
ATGGCAGACCACGCAGAGCACGTATTCAAACCAAACTTCAAAATCCAGCC
CCAGACAAAGGAATGCGTCCCCAAAGGAGCGGTGAAGGGTGGTGGAAGGG
TCGAGCGGGGCTGGTTGAAGGAGCCGCGCTTGCCTTTAGCGGACATGGGG
AATGCACCCTACGCCGAAAGACCCGGTGCGGCCGCCGCCCCCGTGTCGGC
TGGCCTCGCCTCTTCTGTCAGAGGCAGCAAGGACGAGTTTGAGCAAGCCT
CTAGCCCCTCGTTGGTATCGAGACCCCGTGGGACTGCTTCCCCTTCTCAT
CCGGGGGGTGCTGGGCTCCCATTCATGCTCTCCTGCCCTGGCGCACACGG
GGGGGACGAGGATAGTGGGAGTGGAGGAAGGGACAATGCACGGGAAGAAG
AGGTAGAAAGCGAAGAGCTCTTGGCAAACGCGGGGTCAGAACAATTACAG
CGCATCCAAGAGCCGCTCAGGAGGGGCCTGAAGCGTAGACCCTGGGAGCG
TCCCCGGCCCTCAGCCCGACCAACGTCCAGGCCCGAGCTAAGTGTTCACT
CTCGAGACCGCGGCCCGGCGTCGACAACCTGCGTGTCTCCCTCGCCGTCG
GCCATGCTCTCGGAGCCGGCGGCGGCGCTCGGTCTCCGCGTGGTCACTGG
GGCGGGAGGGAGGAAGCAGATTTCGCCAGGCAGTCATTGCCCTCCGTCCC
CGCGGGGCGCCAGCAAGCCTCAGTCAAGCCTTCCATCGCCCACAGGTCCA
ATCAAAGCGGCGCATAAGGTGCCACAACCGCAGCAGCACCAGCAGCATCG
CTCCGTCCAAGTCGTCCGAAGCCGCGAGACTCGCATGGCCTTGCCCGCAT
ACGCATGCCCGGAATGCTCGGGCTTTTTGGACGCCGTCGGGGATCTCTTC
GATCGGGAACAGATCTTGAAGAAGTGCTCTCGACACCGACATGCGCACAA
GCCCTACGAGACGCCGGAGGGCTTCTGGGACCTGTCCTTTCCGGACTCCC
AGGACAAGCACTGAATGACCGAGTCGACCTGCCAACAGAGCGTGGCCGGC
CTCGATAACGCATTAGAAGAGTTGTGCAAATTTCGAAGACAGCTAGAAGA
AGAACGCAGAACTGAACTTCAAAGAGCACAGGAAAAGGACGCCTTATTGG
AGACACAACAAAGTCAGATAGAGGAGTTGCGAGAAGAGAATGAGTTATTG
AGACAGAAAAATGCCAGGCAGGCTGAGAAGATGCGTATGGTCATGAAAGC
GATCAAGCGAGTGTCGGGCGACGGTGTCCCAAGGGGAATGCCCGAGCAAC
AGTGCCCGGAGGAAACCGCATCTGAGAGCAGCGGGCAGACAAGCGTAGGG
ATATGCTCAAGAACTATTGACGGGTCGCATGGCATTAAATGGAGCGGTGG
AGAAGGCACGCCGGCAGGTGTACACTCATCCTGTAGCCAAGGTCTTCCAG
TCGCTCCCTCTTCCCGATCCAAACTGCGGGAGACTCAGTCAAAGCGGGAG
CTTGGGGCCCATGAGCACTTTTCGCGGGCAAAGAAAGAAGGGGGAAAGAA
CGCAATGGCGGTTCATGTCAAATGTCCGCCCTCGAAGGGAGATGAGCTGG
TCATGGCAGACCACGCAGAGCACGTATTCAAACCAAACTTCAAAATCCAG
CCCCAGACAAAGGAATGCGTCCCCAAAGGAGCGGTGAAGGGTGGTGGAAG
GGTCGAGCGGGGCTGGTTGAAGGAGCCGCGCTTGCCTTTAGCGGACATGG
GGAATGCACCCTACGCCGAAAGACCCGGTGCGGCCGCCGCCCCCGTGTCG
GCTGGCCTCGCCTCTTCTGTCAGAGGCAGCAAGGACGAGTTTGAGCAAGC
CTCTAGCCCCTCGTTGGTATCGAGACCCCGTGGGACTGCTTCCCCTTCTC
ATCCGGGGGGTGCTGGGCTCCCATTCATGCTCTCCTGCCCTGGCGCACAC
GGGGGGGACGAGGATAGTGGGAGTGGAGGAAGGGACAATGCACGGGAAGA
AGAGGTAGAAAGCGAAGAGCTCTTGGCAAACGCGGGGTCAGAACAATTAC
AGCGCATCCAAGAGCCGCTCAGGAGGGGCCTGAAGCGTAGACCCTGGGAG
CGTCCCCGGCCCTCAGCCCGACCAACGTCCAGGCCCGAGCTAAGTGTTCA
CTCTCGAGACCGCGGCCCGGCGTCGACAACCTGCGTGTCTCCCTCGCCGT
CGGCCATGCTCTCGGAGCCGGCGGCGGCGCTCGGTCTCCGCGTGGTCACT
GGGGCGGGAGGGAGGAAGCAGATTTCGCCAGGCAGTCATTGCCCTCCGTC
CCCGCGGGGCGCCAGCAAGCCTCAGTCAAGCCTTCCATCGCCCACAGGTC
CAATCAAAGCGGCGCATAAGGTGCCACAACCGCAGCAGCACCAGCAGCAT
CGCTCCGTCCAAGTCGTCCGAAGCCGCGAGACTCGCATGGCCTTGCCCGC
ATACGCATGCCCGGAATGCTCGGGCTTTTTGGACGCCGTCGGGGATCTCT
TCGATCGGGAACAGATCTTGAAGAAGTGCTCTCGACACCGACATGCGCAC
AAGCCCTACGAGACGCCGGAGGGCTTCTGGGACCTGTCCTTTCCGGACTC
CCAGGACAAGCACTGAATGACCGAGTCGACCTGCCAACAGAGCGTGGCCG
GCCTCGATAACGCATTAGAAGAGTTGTGCAAATTTCGAAGACAGCTAGAA
GAAGAACGCAGAACTGAACTTCAAAGAGCACAGGAAAAGGACGCCTTATT
GGAG

Synonyms

Publications