EWM23652.1, cds7026 (CDS) Nannochloropsis gaditana

Overview
NameEWM23652.1
Unique Namecds7026
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:311655..311792 -
Alignment locationCM002470.1:310126..311589 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23652.1
ProductDNA repair protein Sae2/CtIP
Orig transcript idgnl|cribi|Naga_100191g2.7762.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:311655..311792 -
CM002470.1supercontigCM002470.1:310126..311589 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0000077DNA damage checkpoint
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0000014single-stranded DNA endodeoxyribonuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR013882Com1/Ctip_fam
Homology
[Close]
BLAST of EWM23652.1 vs. NCBI_GenBank
Match: gi|585104805|gb|EWM23652.1| (DNA repair protein Sae2/CtIP [Nannochloropsis gaditana])

HSP 1 Score: 1079.32 bits (2790), Expect = 0.000e+0
Identity = 533/533 (100.00%), Postives = 533/533 (100.00%), Query Frame = 0 
Query:    1 MTESTCQQSVAGLDNALEELCKFRRQLEEERRTELQRAQEKDALLETQQSQIEELREENELLRQKNARQAEKMRMVMKAIKRVSGDGVPRGMPEQQCPEETASESSGQTSVGICSRTIDGSHGIKWSGGEGTPAGVHSSCSQGLPVAPSSRSKLRETQSKRELGAHEHFSRAKKEGGKNAMAVHVKCPPSKGDELVMADHAEHVFKPNFKIQPQTKECVPKGAVKGGGRVERGWLKEPRLPLADMGNAPYAERPGAAAAPVSAGLASSVRGSKDEFEQASSPSLVSRPRGTASPSHPGGAGLPFMLSCPGAHGGDEDSGSGGRDNAREEEVESEELLANAGSEQLQRIQEPLRRGLKRRPWERPRPSARPTSRPELSVHSRDRGPASTTCVSPSPSAMLSEPAAALGLRVVTGAGGRKQISPGSHCPPSPRGASKPQSSLPSPTGPIKAAHKVPQPQQHQQHRSVQVVRSRETRMALPAYACPECSGFLDAVGDLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDSQDKH 533
            MTESTCQQSVAGLDNALEELCKFRRQLEEERRTELQRAQEKDALLETQQSQIEELREENELLRQKNARQAEKMRMVMKAIKRVSGDGVPRGMPEQQCPEETASESSGQTSVGICSRTIDGSHGIKWSGGEGTPAGVHSSCSQGLPVAPSSRSKLRETQSKRELGAHEHFSRAKKEGGKNAMAVHVKCPPSKGDELVMADHAEHVFKPNFKIQPQTKECVPKGAVKGGGRVERGWLKEPRLPLADMGNAPYAERPGAAAAPVSAGLASSVRGSKDEFEQASSPSLVSRPRGTASPSHPGGAGLPFMLSCPGAHGGDEDSGSGGRDNAREEEVESEELLANAGSEQLQRIQEPLRRGLKRRPWERPRPSARPTSRPELSVHSRDRGPASTTCVSPSPSAMLSEPAAALGLRVVTGAGGRKQISPGSHCPPSPRGASKPQSSLPSPTGPIKAAHKVPQPQQHQQHRSVQVVRSRETRMALPAYACPECSGFLDAVGDLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDSQDKH
Sbjct:    1 MTESTCQQSVAGLDNALEELCKFRRQLEEERRTELQRAQEKDALLETQQSQIEELREENELLRQKNARQAEKMRMVMKAIKRVSGDGVPRGMPEQQCPEETASESSGQTSVGICSRTIDGSHGIKWSGGEGTPAGVHSSCSQGLPVAPSSRSKLRETQSKRELGAHEHFSRAKKEGGKNAMAVHVKCPPSKGDELVMADHAEHVFKPNFKIQPQTKECVPKGAVKGGGRVERGWLKEPRLPLADMGNAPYAERPGAAAAPVSAGLASSVRGSKDEFEQASSPSLVSRPRGTASPSHPGGAGLPFMLSCPGAHGGDEDSGSGGRDNAREEEVESEELLANAGSEQLQRIQEPLRRGLKRRPWERPRPSARPTSRPELSVHSRDRGPASTTCVSPSPSAMLSEPAAALGLRVVTGAGGRKQISPGSHCPPSPRGASKPQSSLPSPTGPIKAAHKVPQPQQHQQHRSVQVVRSRETRMALPAYACPECSGFLDAVGDLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDSQDKH 533
[Close]
BLAST of EWM23652.1 vs. NCBI_GenBank
Match: gi|673031808|ref|XP_008869865.1| (hypothetical protein H310_06534 [Aphanomyces invadans] >gi|574475016|gb|ETW02017.1| hypothetical protein H310_06534 [Aphanomyces invadans])

HSP 1 Score: 82.0333 bits (201), Expect = 7.128e-14
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 0 
Query:  453 VPQPQQHQQHRSVQVVRSRETRMALPAYACPECSGFLDAVGDLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDS 529
            + +P      + ++VVR+R+ RMALP +AC EC+ +  A+GD F+  Q    CSRHR   +PY TPE FW LSFPDS
Sbjct:  184 IARPNSRPDFKYIEVVRNRDARMALPGHACEECAQYYAALGDEFEGHQF--ACSRHRAKWEPYATPEDFWRLSFPDS 258
[Close]
BLAST of EWM23652.1 vs. NCBI_GenBank
Match: gi|698819313|ref|XP_009842685.1| (hypothetical protein H257_16063 [Aphanomyces astaci] >gi|574102274|gb|ETV67827.1| hypothetical protein H257_16063 [Aphanomyces astaci])

HSP 1 Score: 82.8037 bits (203), Expect = 1.501e-13
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 0 
Query:  463 RSVQVVRSRETRMALPAYACPECSGFLDAVGDLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDS 529
            + ++VVR R+ RMALP +AC EC+ +  A+GD FD +Q    CSRHR   +PY TPE FW LSFPDS
Sbjct:  297 KYIEVVRKRDERMALPGHACDECARYYAALGDEFDGDQF--ACSRHRAKWEPYATPEDFWRLSFPDS 361
[Close]
BLAST of EWM23652.1 vs. NCBI_GenBank
Match: gi|567945467|gb|ETK71278.1| (hypothetical protein L915_21453 [Phytophthora parasitica] >gi|567974082|gb|ETL24729.1| hypothetical protein L916_21318 [Phytophthora parasitica] >gi|568003596|gb|ETL77943.1| hypothetical protein L917_21173 [Phytophthora parasitica])

HSP 1 Score: 78.9518 bits (193), Expect = 8.275e-13
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0 
Query:  465 VQVVRSRETRMALPAYACPECSGFLDAVG--DLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDSQ 530
            V+VVR+RE R ALP + C EC  + DA+G  D  D      KCSRHR   +PY+TP+ FW LSFPDS+
Sbjct:  187 VEVVRNREERKALPGHDCMECKKYYDALGGLDAVDAAAHKNKCSRHRARFEPYQTPDDFWRLSFPDSE 254
[Close]
BLAST of EWM23652.1 vs. NCBI_GenBank
Match: gi|675212707|ref|XP_008915238.1| (hypothetical protein PPTG_18752 [Phytophthora parasitica INRA-310] >gi|566007987|gb|ETI30898.1| hypothetical protein F443_22046 [Phytophthora parasitica P1569] >gi|568033504|gb|ETM31210.1| hypothetical protein L914_21186 [Phytophthora parasitica] >gi|568084573|gb|ETM99501.1| hypothetical protein PPTG_18752 [Phytophthora parasitica INRA-310] >gi|570311669|gb|ETO59617.1| hypothetical protein F444_22062 [Phytophthora parasitica P1976] >gi|570935439|gb|ETP00696.1| hypothetical protein F441_21940 [Phytophthora parasitica CJ01A1] >gi|570965737|gb|ETP28856.1| hypothetical protein F442_21911 [Phytophthora parasitica P10297] >gi|970662277|gb|KUF99679.1| Beta-D-xylosidase 3 [Phytophthora nicotianae])

HSP 1 Score: 78.9518 bits (193), Expect = 8.755e-13
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0 
Query:  465 VQVVRSRETRMALPAYACPECSGFLDAVG--DLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDSQ 530
            V+VVR+RE R ALP + C EC  + DA+G  D  D      KCSRHR   +PY+TP+ FW LSFPDS+
Sbjct:  187 VEVVRNREERKALPGHDCMECKKYYDALGGLDAVDAAAHKNKCSRHRARFEPYQTPDDFWRLSFPDSE 254
[Close]
BLAST of EWM23652.1 vs. NCBI_GenBank
Match: gi|970656944|gb|KUF94893.1| (DNA endonuclease RBBP8 [Phytophthora nicotianae])

HSP 1 Score: 78.9518 bits (193), Expect = 9.440e-13
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0 
Query:  465 VQVVRSRETRMALPAYACPECSGFLDAVG--DLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDSQ 530
            V+VVR+RE R ALP + C EC  + DA+G  D  D      KCSRHR   +PY+TP+ FW LSFPDS+
Sbjct:  187 VEVVRNREERKALPGHDCMECKKYYDALGGLDAVDAAAHKNKCSRHRARFEPYQTPDDFWRLSFPDSE 254
[Close]
BLAST of EWM23652.1 vs. NCBI_GenBank
Match: gi|301107954|ref|XP_002903059.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262098177|gb|EEY56229.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 77.7962 bits (190), Expect = 2.314e-12
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0 
Query:  465 VQVVRSRETRMALPAYACPECSGFLDAVGDL--FDREQILKKCSRHRHAHKPYETPEGFWDLSFPDSQ 530
            V+VVR+RE R ALP + C EC  + DA+G L   D      KCSRHR   +PY+TP+ FW LSFPDS+
Sbjct:  186 VEVVRNREERKALPGHDCMECKKYYDALGALGAVDAAAHKNKCSRHRARFEPYQTPDDFWRLSFPDSE 253
[Close]
BLAST of EWM23652.1 vs. NCBI_GenBank
Match: gi|669154518|ref|XP_008612821.1| (hypothetical protein SDRG_08705 [Saprolegnia diclina VS20] >gi|530735356|gb|EQC33598.1| hypothetical protein SDRG_08705 [Saprolegnia diclina VS20])

HSP 1 Score: 77.7962 bits (190), Expect = 2.660e-12
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 0 
Query:  465 VQVVRSRETRMALPAYACPECSGFLDAVGDLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDS 529
            ++VVR R+ R ALP +AC +C+ + DA+G+ F+ ++ L  CSRHR   +PY TPE FW L+FPDS
Sbjct:  202 IEVVRKRDERAALPGHACLQCTEYFDALGEGFEGQRDL--CSRHRARFEPYSTPEDFWRLTFPDS 264
[Close]
BLAST of EWM23652.1 vs. NCBI_GenBank
Match: gi|325183848|emb|CCA18306.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325183963|emb|CCA18421.1| conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 75.8702 bits (185), Expect = 1.830e-11
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = 0 
Query:  440 LPSPTGPIKAAHKVPQPQQHQQHRSVQVVRSRETRMALPAYACPECSGFLDAVG------------DLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDS 529
             PSP   +     +P+ +Q   +  V+VVR+R+ R  LPA+ C +CS + DA+             D+ D  ++  KCSRHR   +PY+TP+ FW LSFPDS
Sbjct:  206 FPSPRNTL-----LPKTKQ-SDYSYVEVVRNRDVRATLPAHDCRDCSKYYDAIAKMDFPMKSSDAYDMVDSHKM--KCSRHRARFEPYQTPDDFWRLSFPDS 299
[Close]
BLAST of EWM23652.1 vs. NCBI_GenBank
Match: gi|1214707702|gb|OWZ19069.1| (hypothetical protein PHMEG_0006736 [Phytophthora megakarya])

HSP 1 Score: 74.3294 bits (181), Expect = 2.382e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 0 
Query:  465 VQVVRSRETRMALPAYACPECSGFLDAVGDLFDREQILKKCSRHRHAHKPYETPEGFWDLSFPDSQ 530
            V+VVR+R+ R  LPA+ C EC  + DA+G +    Q   KCSRHR   +PY+TP+ FW LSFPDS+
Sbjct:  173 VEVVRNRDERKELPAHDCFECKKYYDALGGIGAAAQ-KNKCSRHRARFEPYQTPDDFWRLSFPDSE 237
The following BLAST results are available for this feature:
BLAST of EWM23652.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104805|gb|EWM23652.1|0.000e+0100.00DNA repair protein Sae2/CtIP [Nannochloropsis gadi... [more]
gi|673031808|ref|XP_008869865.1|7.128e-1448.05hypothetical protein H310_06534 [Aphanomyces invad... [more]
gi|698819313|ref|XP_009842685.1|1.501e-1355.22hypothetical protein H257_16063 [Aphanomyces astac... [more]
gi|567945467|gb|ETK71278.1|8.275e-1352.94hypothetical protein L915_21453 [Phytophthora para... [more]
gi|675212707|ref|XP_008915238.1|8.755e-1352.94hypothetical protein PPTG_18752 [Phytophthora para... [more]
gi|970656944|gb|KUF94893.1|9.440e-1352.94DNA endonuclease RBBP8 [Phytophthora nicotianae][more]
gi|301107954|ref|XP_002903059.1|2.314e-1252.94conserved hypothetical protein [Phytophthora infes... [more]
gi|669154518|ref|XP_008612821.1|2.660e-1250.77hypothetical protein SDRG_08705 [Saprolegnia dicli... [more]
gi|325183848|emb|CCA18306.1|1.830e-1138.24conserved hypothetical protein [Albugo laibachii N... [more]
gi|1214707702|gb|OWZ19069.1|2.382e-1151.52hypothetical protein PHMEG_0006736 [Phytophthora m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7043rna7043Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications