rna7040, rna7040 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7040
Unique Name	rna7040
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1755
Alignment location	CM002470.1:301594..303465 +

Link to JBrowse

Properties


Property Name	Value
Product	trna (uracil-5-)-methyltransferase
Orig transcript id	gnl\|cribi\|Naga_100191g5.7758.mrna
Orig protein id	gnl\|cribi\|Naga_100191g5.7758
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:301594..303465 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100191g5	gene6806	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7040	rna7040-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23648.1	cds7023	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:301594..303465+
coding sequence from alignment at CM002470.1:301594..303465+

mRNA sequence

>rna7040 ID=rna7040|Name=rna7040|organism=Nannochloropsis gaditana|type=mRNA|length=1755bp
ATGCGCTCTACACATTGTATAAAACCCGCCGCGTTCGGCCCCAATATCCT
CGGTCTGGAATCGCCCTTGCATGCCAGAGAACTTGTGATGGTGGAGCCTG
AAGATGCGTGCTCTGACCTTTTCCCAAGGAGAGCTTCCTACCAGGATTCC
TTTTTTTCTTCCTCCTCACCATCTTCCCTTTCCGCTCCCTCGCTTCGAGG
TAGAATCGCGCTGATCAAACGAAATGGATGCAATTTTACAGAAAAGGTGT
GGCGAGCCCAGCAAGCAGAGGCGGCGGGAGTCATCGTCTACGACTCGGCG
GCCCGTGAGCGGTGGGGGACCATCATGTCAGGCGTGGAGGAGTGGACGTC
GCGCATCACCATCCCCTCGGTCTTCGTCTCGCACTCCACGGGGCTGAGCC
TCAGGAACGCCGTTGCCCAGTCAGAACGCCAGTCCTCCGGGCCCGGTTTT
GAGGGGGCCGCGCGTGTCCGGGTCACTCTCAACGACACGGGCCACGTACG
GGCCAAGACGAAGCAGATTGGACCTATCGAGACCCTCGCCACCTACGTGG
TCGTCTCCCTCGTTCTGCTTTCCTTCTCCGGCTGTTGCGGCCTCCTCCTC
GCCCTCTGCGTTACCTGCTACCAGCGAGCCTTTCGGCACCGGGCCCTTCG
TGGGCTCAAGGTGGAGAAATACCAACGTAAGAAAGTTAGCCAGCAGCCAC
TGCTTGCCTACAACAGTAAAGACAAGGGCAGCAGCGCCTCGACATCCCCC
TCTGCCCTCTTGTCGCGCGCGAGCCCCACCTCCCTCCCCGACAGGCGCAA
AGGCCTGCGAGGCTTGTGGGGTCTCTTGAGCTTGCGACGCGTCATAAACA
AGCAGCGCTCAAGAATTCCGCTTCCACTACCTGCTCACCCGCGTCTGGAG
TCCGTGCCAGCCTCGGGTCTGGGGAAGGCGCGGGGGGGGCGCTCTCCTTG
CCCTCTCACGGGAGACGGGGAGGCGCCGACGGCTTGTGAGGGGGTAGGAG
CGTCGAAGGACTCCTGGAGCGAGGAGGAAGAGCAGACTACATGTGCCATT
TGCTTGGACGAATATGAAGATGGCGATCTTCTGCGTTTTCTGCCGTGTCA
GCACAGATATCACGACAAGTGTATCTTGCCCTGGTTGCTGGAGAAGTCCG
AGGCCTGCCCCATGTGCAAAAGGCCCTGCTTCTCGACGGTTCCACGACCC
GGTGGCAGCGAAAGGAGAGGAAGGCAGGAGACAGCAGCCACCACGATAGC
GCTATCATCTCGTGCGCATGAGCGATGGGAAGAAGGAGGAGGAGAGGGTA
GGAGAAGGCAGGAGAGGGAAGGCAGCGCGCAGGGCCCAGACAGCGCAACG
TATCCCCCGACGCTCGACGTACAGATTTTAGATGAGATTGTGCTATTCTT
AACAAACAACCTGTCGCTTTTAGCTATGCTCTTAGTAGGGGTGGTGACAT
GCTGCGTTTTGCTCGGGGCAGAAAAGAAACTAGCACCAGGTGTTCCATCC
AGCCACAGAAACATCAAAAACAAAGGAGAGGAAAGGAAGGCCGGAATTGT
ACAGGCACTGGCCATCGCGGTAGAAAGCAGGCAGCAGTCCGTCGTGAGAA
TCGTCGCCGGGGGCAGGAGGTTGGGAAGAGATAAATGTCCTCAAAAACCG
TCGACACCAGGCAGGGAAATGAACGTGCTTCCATTTCGTACTCGTCCGAG
TGTCGATGCAAATGCGAGACTGGTCTTATCCATAAATTCTTATCCGCGAA
AGTAA

protein sequence of rna7040

>rna7040-protein ID=rna7040-protein|Name=rna7040|organism=Nannochloropsis gaditana|type=polypeptide|length=623bp
MADFEGRCEDILTLAGEALGIDLSYLSPNSASLDQYETSLQRKVDELRSI
FFPYWSCEPTIFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITESART
GAPQGSPGKLCYLMWGADKKLVVISSFPLASRRINDLMPRLLLALGEGPL
ILRRSLRAVNFLDTLAGDTLIALMYETAWAEGGKAAKEEWVAAAREHVKE
ALGVQVVGRGKRVALPVDRAYVLEEFCLSPPPPASSRGASPLPPYAPGTG
GADTGRDPRGGPRRASAGVPHPCPSILRYKQWDGAFSNPNGCMALHTLRW
LCARADAVLQRGDAPRGVQATGGEADERGRERQMEDGDREQQGDTEGRGG
PGGCEGCVDVASGGEGRVCRERQGLRPRVCRPPPSGDKPPAFDLLELFCG
GGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERF
HPERLGHYRRQQEQEEEHDGEGARARTMLGPGKRVASAGGEAGLTARAQG
MGQSPPGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLL
RDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEV
AVHLQRRGTDEKGADGSHTLIDG

mRNA from alignment at CM002470.1:301594..303465+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7040 ID=rna7040|Name=rna7040|organism=Nannochloropsis gaditana|type=mRNA|length=1872bp|location=Sequence derived from alignment at CM002470.1:301594..303465+ (Nannochloropsis gaditana)
ATGGCTGATTTTGAAGGAAGGTGTGAGGACATCCTTACGTTGGCCGGCGA
GGCCTTGGGCATAGACCTCAGCTACCTCTCTCCTAATTCTGCATCATTGG
ATCAGTACGAGACCTCTCTTCAACGGAAAGTAGATGAGTTGCGAAGTATT
TTCTTCCCATATTGGTCCTGCGAGCCTACGATTTTTCGCTCGCCGCCTGT
GCACTACCGCCTCCGGGCCAAGTTCGGGATCGGCCGCGTGCTCCCGCAAG
CATCCCACCCGGCAGGCCCCATGGCGGGCATCACGGAGTCGGCGAGGACT
GGGGCGCCACAGGGGTCTCCCGGTAAGCTCTGCTACCTTATGTGGGGGGC
CGACAAGAAGCTGGTCGTGATCTCGTCGTTCCCCTTGGCCTCCCGTCGCA
TCAATGACCTTATGCCTCGCCTGCTTCTCGCactgggggaggggccctTG
ATCTTGCGTCGAAGCCTCCGCGCCGTGAATTTTCTGGATACTTTAGCGGG
GGATACCCTCATTGCTCTCATGTATGAGACGGCCTgggcagagggcggga
aagcagccaaggaggagtgggtggcggcggcacgAGAGCATGTGAAGGAG
GCTCTGGGCGTgcaggtggtggggaggggcaagagggtCGCCCTGCCCGT
GGACAGGGCCTacgtgctggaggagttctgtctctctcctcccccgccag
cctcGTCACGCGGCGCGtcgcccttgcctccctaCGCGCCTGGGACCGGT
GGGGCCGACACGGGCAGGGACCcgagaggagggccaaggcGGGCTTCGGC
CGGCGTCCCGCACCCTTGTCCTTCGATCTTGCGGTACAAGCAGTGGGACG
GGGCGTTCTCCAACCCGAACGGGTGCATGGCCCTCCACACCCTCCGCTGG
CTGTGTGCGCGGGCCGACGCCGTCCTGCAAAGAGGCGATGCCCCTCGTGG
CGTGCAggcgacggggggggaggccgatgagaggggaagggaaagacaaa
tggaggacggggaccgGGAGCAGCAAGGGGACACGGAAGGTcgtggaggg
cctggaggctGCGAGGGGTGTGTGGACGTTGCatcggggggagagggacg
ggtgtGCCGCGAGAGGCAGGGCTTGCGTCCCCGCGtctgccgcccccccc
caagcgGAGACAAGCCGCCTGCTTTCGATTTGTTGGAGCTCTTTTgcggc
ggaggaaatcaCACGGTCGCTTTGAGCCGGAAATTTCGTCGGGTGGTAGG
CGTGGAAATTGACCGGCGGCTGGTGGCCGCAGCCAAGGAGAACCTGGCCC
TGAACGGTGTGAAGAACGCCTCGGTCATCCAGATCCCCAGCGAGAGGTTC
CATCCAGAGCGCTTGGGCCATTATCGGCGGCagcaagagcaggaggagga
gcacgacggcgagggagcgagggcaaGAACGATGCTCGGGCCGGGGAAGC
GGGTAGCTAGTGCcggcggggaggccgggcTGACCGCACGGGCGCAGGGC
ATGGGGCAGAGTCCACCCGGTGAAGACGACCCTTCCTTTCGGGTTGTACT
TGTAGACCCGCCACGGGCTGGATTGGACAGACACACACGGAAGATGGTCT
CTAAGTACGAAGACATCTTGTACATATCCTGTGCGCCCCTCTCCTTATTG
CGTGACCTGCgcggggagagcgaggaagaacgGCGACAGAGTGCAGACAG
GAAGTTCCTGTCGCTCGCAGGCTTTGGGCTGGTTCACACGCACAAAGTGG
TGGACATGTGTGTCCTTGACCACTTCCCGGGCACGCGGCATATCGAGGTC
GCCGTCCACCTACAGCGACGCGGAACCGACGAGAAAGGAGCAGATGGCTC
CCACACATTGATCGATGGCTGA

Coding sequence (CDS) from alignment at CM002470.1:301594..303465+

>rna7040 ID=rna7040|Name=rna7040|organism=Nannochloropsis gaditana|type=CDS|length=1872bp|location=Sequence derived from alignment at CM002470.1:301594..303465+ (Nannochloropsis gaditana)
ATGGCTGATTTTGAAGGAAGGTGTGAGGACATCCTTACGTTGGCCGGCGA
GGCCTTGGGCATAGACCTCAGCTACCTCTCTCCTAATTCTGCATCATTGG
ATCAGTACGAGACCTCTCTTCAACGGAAAGTAGATGAGTTGCGAAGTATT
TTCTTCCCATATTGGTCCTGCGAGCCTACGATTTTTCGCTCGCCGCCTGT
GCACTACCGCCTCCGGGCCAAGTTCGGGATCGGCCGCGTGCTCCCGCAAG
CATCCCACCCGGCAGGCCCCATGGCGGGCATCACGGAGTCGGCGAGGACT
GGGGCGCCACAGGGGTCTCCCGGTAAGCTCTGCTACCTTATGTGGGGGGC
CGACAAGAAGCTGGTCGTGATCTCGTCGTTCCCCTTGGCCTCCCGTCGCA
TCAATGACCTTATGCCTCGCCTGCTTCTCGCactgggggaggggccctTG
ATCTTGCGTCGAAGCCTCCGCGCCGTGAATTTTCTGGATACTTTAGCGGG
GGATACCCTCATTGCTCTCATGTATGAGACGGCCTgggcagagggcggga
aagcagccaaggaggagtgggtggcggcggcacgAGAGCATGTGAAGGAG
GCTCTGGGCGTgcaggtggtggggaggggcaagagggtCGCCCTGCCCGT
GGACAGGGCCTacgtgctggaggagttctgtctctctcctcccccgccag
cctcGTCACGCGGCGCGtcgcccttgcctccctaCGCGCCTGGGACCGGT
GGGGCCGACACGGGCAGGGACCcgagaggagggccaaggcGGGCTTCGGC
CGGCGTCCCGCACCCTTGTCCTTCGATCTTGCGGTACAAGCAGTGGGACG
GGGCGTTCTCCAACCCGAACGGGTGCATGGCCCTCCACACCCTCCGCTGG
CTGTGTGCGCGGGCCGACGCCGTCCTGCAAAGAGGCGATGCCCCTCGTGG
CGTGCAggcgacggggggggaggccgatgagaggggaagggaaagacaaa
tggaggacggggaccgGGAGCAGCAAGGGGACACGGAAGGTcgtggaggg
cctggaggctGCGAGGGGTGTGTGGACGTTGCatcggggggagagggacg
ggtgtGCCGCGAGAGGCAGGGCTTGCGTCCCCGCGtctgccgcccccccc
caagcgGAGACAAGCCGCCTGCTTTCGATTTGTTGGAGCTCTTTTgcggc
ggaggaaatcaCACGGTCGCTTTGAGCCGGAAATTTCGTCGGGTGGTAGG
CGTGGAAATTGACCGGCGGCTGGTGGCCGCAGCCAAGGAGAACCTGGCCC
TGAACGGTGTGAAGAACGCCTCGGTCATCCAGATCCCCAGCGAGAGGTTC
CATCCAGAGCGCTTGGGCCATTATCGGCGGCagcaagagcaggaggagga
gcacgacggcgagggagcgagggcaaGAACGATGCTCGGGCCGGGGAAGC
GGGTAGCTAGTGCcggcggggaggccgggcTGACCGCACGGGCGCAGGGC
ATGGGGCAGAGTCCACCCGGTGAAGACGACCCTTCCTTTCGGGTTGTACT
TGTAGACCCGCCACGGGCTGGATTGGACAGACACACACGGAAGATGGTCT
CTAAGTACGAAGACATCTTGTACATATCCTGTGCGCCCCTCTCCTTATTG
CGTGACCTGCgcggggagagcgaggaagaacgGCGACAGAGTGCAGACAG
GAAGTTCCTGTCGCTCGCAGGCTTTGGGCTGGTTCACACGCACAAAGTGG
TGGACATGTGTGTCCTTGACCACTTCCCGGGCACGCGGCATATCGAGGTC
GCCGTCCACCTACAGCGACGCGGAACCGACGAGAAAGGAGCAGATGGCTC
CCACACATTGATCGATGGCTGA

Synonyms

Publications