EWM23648.1, cds7023 (CDS) Nannochloropsis gaditana

Overview
NameEWM23648.1
Unique Namecds7023
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:301594..303465 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23648.1
Producttrna (uracil-5-)-methyltransferase
Orig transcript idgnl|cribi|Naga_100191g5.7758.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:301594..303465 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008173RNA methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR030390MeTrfase_TrmA_AS
IPR010280U5_MeTrfase_fam
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM23648.1 vs. NCBI_GenBank
Match: gi|585104801|gb|EWM23648.1| (trna (uracil-5-)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 1258.82 bits (3256), Expect = 0.000e+0
Identity = 623/623 (100.00%), Postives = 623/623 (100.00%), Query Frame = 0
Query:    1 MADFEGRCEDILTLAGEALGIDLSYLSPNSASLDQYETSLQRKVDELRSIFFPYWSCEPTIFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITESARTGAPQGSPGKLCYLMWGADKKLVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIALMYETAWAEGGKAAKEEWVAAAREHVKEALGVQVVGRGKRVALPVDRAYVLEEFCLSPPPPASSRGASPLPPYAPGTGGADTGRDPRGGPRRASAGVPHPCPSILRYKQWDGAFSNPNGCMALHTLRWLCARADAVLQRGDAPRGVQATGGEADERGRERQMEDGDREQQGDTEGRGGPGGCEGCVDVASGGEGRVCRERQGLRPRVCRPPPSGDKPPAFDLLELFCGGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQQEQEEEHDGEGARARTMLGPGKRVASAGGEAGLTARAQGMGQSPPGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRRGTDEKGADGSHTLIDG 623
            MADFEGRCEDILTLAGEALGIDLSYLSPNSASLDQYETSLQRKVDELRSIFFPYWSCEPTIFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITESARTGAPQGSPGKLCYLMWGADKKLVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIALMYETAWAEGGKAAKEEWVAAAREHVKEALGVQVVGRGKRVALPVDRAYVLEEFCLSPPPPASSRGASPLPPYAPGTGGADTGRDPRGGPRRASAGVPHPCPSILRYKQWDGAFSNPNGCMALHTLRWLCARADAVLQRGDAPRGVQATGGEADERGRERQMEDGDREQQGDTEGRGGPGGCEGCVDVASGGEGRVCRERQGLRPRVCRPPPSGDKPPAFDLLELFCGGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQQEQEEEHDGEGARARTMLGPGKRVASAGGEAGLTARAQGMGQSPPGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRRGTDEKGADGSHTLIDG
Sbjct:    1 MADFEGRCEDILTLAGEALGIDLSYLSPNSASLDQYETSLQRKVDELRSIFFPYWSCEPTIFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITESARTGAPQGSPGKLCYLMWGADKKLVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIALMYETAWAEGGKAAKEEWVAAAREHVKEALGVQVVGRGKRVALPVDRAYVLEEFCLSPPPPASSRGASPLPPYAPGTGGADTGRDPRGGPRRASAGVPHPCPSILRYKQWDGAFSNPNGCMALHTLRWLCARADAVLQRGDAPRGVQATGGEADERGRERQMEDGDREQQGDTEGRGGPGGCEGCVDVASGGEGRVCRERQGLRPRVCRPPPSGDKPPAFDLLELFCGGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQQEQEEEHDGEGARARTMLGPGKRVASAGGEAGLTARAQGMGQSPPGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRRGTDEKGADGSHTLIDG 623          
BLAST of EWM23648.1 vs. NCBI_GenBank
Match: gi|553188667|ref|XP_005854838.1| (trna (uracil-5-)-methyltransferase, partial [Nannochloropsis gaditana CCMP526] >gi|422294218|gb|EKU21518.1| trna (uracil-5-)-methyltransferase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 365.54 bits (937), Expect = 3.949e-121
Identity = 179/183 (97.81%), Postives = 181/183 (98.91%), Query Frame = 0
Query:    1 MADFEGRCEDILTLAGEALGIDLSYLSPNSASLDQYETSLQRKVDELRSIFFPYWSCEPTIFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITESARTGAPQGSPGKLCYLMWGADKKLVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIALMYETAWAEGG 183
            MADFEGRCEDIL LAGEALGIDLSYLSPNSASLDQYETSLQRKVDELRSIFFPYWSC+PTIFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITESARTGAPQGSPGKLCYLMWGADKK VVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIAL+YETAWAEGG
Sbjct:    1 MADFEGRCEDILMLAGEALGIDLSYLSPNSASLDQYETSLQRKVDELRSIFFPYWSCQPTIFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITESARTGAPQGSPGKLCYLMWGADKKPVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIALIYETAWAEGG 183          
BLAST of EWM23648.1 vs. NCBI_GenBank
Match: gi|553188670|ref|XP_005854839.1| (trna (uracil-5-)-methyltransferase, partial [Nannochloropsis gaditana CCMP526] >gi|422294219|gb|EKU21519.1| trna (uracil-5-)-methyltransferase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 221.09 bits (562), Expect = 3.853e-66
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0
Query:  506 PGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRRGTDEKG 613
            PGEDDPSFRVVLVDPPRAGLDRHTRKMVS YEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRRGTDEKG
Sbjct:    1 PGEDDPSFRVVLVDPPRAGLDRHTRKMVSNYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRRGTDEKG 108          
BLAST of EWM23648.1 vs. NCBI_GenBank
Match: gi|255080342|ref|XP_002503751.1| (predicted protein [Micromonas commoda] >gi|226519018|gb|ACO65009.1| predicted protein [Micromonas commoda])

HSP 1 Score: 120.939 bits (302), Expect = 1.996e-25
Identity = 85/215 (39.53%), Postives = 106/215 (49.30%), Query Frame = 0
Query:  394 LLELFCGGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQQEQEEEHDGEGARARTMLGPGKRVASAGGEAG-LTARAQGMGQSPPGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRR 607
            LLEL+CG GNH V+LS +F RV  VEI+ RLVAAA EN A+NGV NA+V  +P+E F                      ARART  G G R    G +   L A A   G             VLVDPPRAGLD  T  +V+ +  +LY++C   SL RDL+                      L  TH+V  M + DHFPG+R  EV V L+ +
Sbjct:  353 LLELYCGNGNHAVSLSPRFGRVTAVEIEPRLVAAANENFAVNGVANATVTALPAEVF----------------------ARART--GTGSRGLLDGDDVDQLLADAWRDGT------------VLVDPPRAGLDEDTLALVAGFGSVLYVACDCASLARDLKST--------------------LGKTHEVRRMALFDHFPGSRFCEVVVWLEAK 511          
BLAST of EWM23648.1 vs. NCBI_GenBank
Match: gi|255073729|ref|XP_002500539.1| (predicted protein [Micromonas commoda] >gi|226515802|gb|ACO61797.1| predicted protein [Micromonas commoda])

HSP 1 Score: 120.939 bits (302), Expect = 9.463e-25
Identity = 84/220 (38.18%), Postives = 107/220 (48.64%), Query Frame = 0
Query:  389 PPAFDLLELFCGGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQQEQEEEHDGEGARARTMLGPGKRVASAGGEAGLTARAQGMGQSPPGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLS-LLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRR 607
            PP+  LLEL+ G GNHTVAL++ F  V  VE+   L  AA+ENL  NGV+NA V+  PSE      L   +R +E         A A       KR   +G E  + A                + VVLVDPPRAGLD  T  +VS+++ +LYISC P   LL +  G        + + +       GL  TH +V   V DHFP TRHIE      RR
Sbjct:  941 PPS--LLELYSGNGNHTVALAKYFDSVAAVELSGVLCEAARENLERNGVENAKVLHSPSESVARGMLRRKKRHEEGRVGKAAMAAAATGAGDGSKRGDGSGMEFDINA----------------YDVVLVDPPRAGLDPDTLDLVSRFDVVLYISCDPRKGLLENAVGPHAARALDTGEFEGEFKGWSGLARTHDLVRFAVFDHFPYTRHIECGACFVRR 1142          

HSP 2 Score: 79.7221 bits (195), Expect = 8.237e-12
Identity = 91/328 (27.74%), Postives = 128/328 (39.02%), Query Frame = 0
Query:   25 YLSPNSASLDQYETSLQRKVDELRSIFFPYW-----------------SCEPTIFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGIT--ESARTGAPQGSPGKLCYLMWGADKKLVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDT--LAGDTLIALMY----ETAW---AEGGKAAKEEWVAAAREHVK---------------------EALGVQVVGRGKRVALPV-DRAYVLEEFCLSPPPPASSRGASPLPPYAPGTGGADTGRDPRGGPRRASAGVPHPCPSILRYKQWDGAFSNPNGCMALHTLRWLC 302
            Y  P  AS   Y  +L  KV EL  +F P                   S  P +F SPP+++R R +F   +V+ + +       GIT  ES   G       +L Y MW   K  V I+ FP+A R I +LMP +L      P  L   L+A++FL +  + G  L+ ++Y    + AW   AEG +A  +  +   RE V                      +A  + ++GR +   + V D  +V E   L                              R G R             LRY+Q +GAFSNPN  MA  TL WLC
Sbjct:  646 YHDPVDAS--TYSAALDAKVAELERLFSPLMQQASIPILNAKGVDRSVSVRPEVFPSPPLNFRSRCRF---QVMWEDAPVTAESTGITPGESVEPGR------RLSYRMWNKGKPTVPITEFPMALREIEELMPAVLREAEAHPE-LGDGLQAIHFLASRGIRGGMLVTMVYGRPIDEAWKMAAEGPRARLKAAMVDIRERVYGGGDDDGFDGFAGPRGDDEELDATALNILGRSRGTQIVVGDACHVFETLAL------------------------------RDGRR-------------LRYRQAEGAFSNPNSFMAESTLDWLC 918          
BLAST of EWM23648.1 vs. NCBI_GenBank
Match: gi|515481214|ref|WP_016914482.1| (tRNA (uridine(54)-C5)-methyltransferase TrmA [Halomonas stevensii])

HSP 1 Score: 112.849 bits (281), Expect = 2.311e-23
Identity = 77/216 (35.65%), Postives = 99/216 (45.83%), Query Frame = 0
Query:  393 DLLELFCGGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQQEQEEEHDGEGARARTMLGPGKRVASAGGEAGLTARAQGMGQSPPGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRRG 608
            DL+EL+CG GN T+AL+  FRRV+  EI R  VA+A  NL  NG+ NA V ++ +E F                   GE A        G+RVA    E GL              DD  F  VLVDPPRAGLD  + + +S+Y  I+YISC P++L  +L                       L  TH++    + D FP T H E  V L RR 
Sbjct:  214 DLVELYCGNGNFTIALAENFRRVLATEISRTSVASANVNLEANGINNAHVARMSAEEFALAL--------------KGEKA--------GRRVA----EMGL--------------DDYRFSTVLVDPPRAGLDEQSCEQLSEYAQIVYISCNPVTLADNLA---------------------QLTKTHQIERFALFDQFPFTHHCECGVLLTRRS 368          

HSP 2 Score: 66.2402 bits (160), Expect = 5.451e-8
Identity = 50/174 (28.74%), Postives = 76/174 (43.68%), Query Frame = 0
Query:   61 IFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITESARTGAPQGSPGKLCYLMWGAD------KKLVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIALMY----ETAWAEGGKAAKEEWVAAAREHVKEALGVQVVGRGKRVALPVDRAYVLE 224
            ++ SP  HYR R +F I                                L Y M+  D      K+++ +  F +AS RIN+LMP+L  A      +LRR L  V FL TL+G+ L+ L+Y    + AW E  +A + E            LG+ ++GR ++  L + R +V E
Sbjct:   36 VYPSPASHYRQRCEFRIWH--------------------------EDDDLFYAMFEVDPDNPKQKRVIRLDQFAVASERINELMPQLRDAFLASD-VLRRRLFQVEFLTTLSGEALVTLIYHRPLDDAWEEQARALEAE------------LGIMIIGRSRKQRLVLSRDHVWE 170          
BLAST of EWM23648.1 vs. NCBI_GenBank
Match: gi|746110342|ref|WP_039176204.1| (tRNA (uracil(54)-C(5))-methyltransferase [Halomonas hydrothermalis] >gi|730432330|gb|KHJ51959.1| tRNA (uracil-5-)-methyltransferase [Halomonas hydrothermalis])

HSP 1 Score: 112.464 bits (280), Expect = 2.712e-23
Identity = 76/216 (35.19%), Postives = 98/216 (45.37%), Query Frame = 0
Query:  393 DLLELFCGGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQQEQEEEHDGEGARARTMLGPGKRVASAGGEAGLTARAQGMGQSPPGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRRG 608
            DL+EL+CG GN T+AL+  FRRV+  EI R  VA+A  NL  NG+ NA V ++ +E F                      A A      G+RVA    E GL              DD  F  VLVDPPRAGLD  + + +S+Y  I+YISC P++L  +L                       L  TH++    + D FP T H E  V L RR 
Sbjct:  214 DLVELYCGNGNFTIALAENFRRVLATEISRTSVASANVNLEANGINNAHVARMSAEEF----------------------ALALKGEKAGRRVA----EMGL--------------DDYRFSTVLVDPPRAGLDEQSCEQLSEYAQIVYISCNPVTLADNLA---------------------QLTKTHQIERFALFDQFPFTHHCECGVLLTRRS 368          

HSP 2 Score: 66.6254 bits (161), Expect = 4.057e-8
Identity = 50/174 (28.74%), Postives = 76/174 (43.68%), Query Frame = 0
Query:   61 IFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITESARTGAPQGSPGKLCYLMWGAD------KKLVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIALMY----ETAWAEGGKAAKEEWVAAAREHVKEALGVQVVGRGKRVALPVDRAYVLE 224
            ++ SP  HYR R +F I                                L Y M+  D      K+++ +  F +AS RIN+LMP+L  A      +LRR L  V FL TL+G+ L+ L+Y    + AW E  +A + E            LG+ ++GR ++  L + R +V E
Sbjct:   36 VYPSPASHYRQRCEFRIWH--------------------------EDDDLFYAMFEVDPDNPKQKRVIRLDQFAVASERINELMPQLRDAFLASD-VLRRRLFQVEFLTTLSGEALVTLIYHRPLDDAWEEQARALETE------------LGIMIIGRSRKQRLVLSRDHVWE 170          
BLAST of EWM23648.1 vs. NCBI_GenBank
Match: gi|1173338847|ref|WP_081195611.1| (tRNA (uridine(54)-C5)-methyltransferase TrmA [Halomonas sp. BC1])

HSP 1 Score: 112.079 bits (279), Expect = 3.992e-23
Identity = 75/216 (34.72%), Postives = 97/216 (44.91%), Query Frame = 0
Query:  393 DLLELFCGGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQQEQEEEHDGEGARARTMLGPGKRVASAGGEAGLTARAQGMGQSPPGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRRG 608
            DL+EL+CG GN T+AL+  FRRV+  EI R  VA+A  NL  NG+ NA V ++ +E F                   GE A        G+RVA  G E                  D  F  VLVDPPRAGLD  + + +S+Y  I+YISC P++L  +L                       L  TH++    + D FP T H E  V L RR 
Sbjct:  214 DLVELYCGNGNFTIALAENFRRVLATEISRTSVASANVNLEANGINNAHVARMSAEEFALAL--------------KGEKA--------GRRVAEIGLE------------------DYRFSTVLVDPPRAGLDEQSCEQLSEYAQIVYISCNPVTLADNLA---------------------QLTKTHQIERFALFDQFPFTHHCECGVLLTRRS 368          
BLAST of EWM23648.1 vs. NCBI_GenBank
Match: gi|551611175|ref|XP_005786680.1| (hypothetical protein EMIHUDRAFT_449313 [Emiliania huxleyi CCMP1516] >gi|485639982|gb|EOD34251.1| hypothetical protein EMIHUDRAFT_449313 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 110.153 bits (274), Expect = 2.905e-22
Identity = 84/217 (38.71%), Postives = 104/217 (47.93%), Query Frame = 0
Query:  400 GGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQQEQEEEHDGEGARARTMLGP----GKRVASAGGEAGLTARAQGMGQSPPGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDL-RGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRRGTDE 611
               NHTVAL+  F  V+ VEIDRRL AAA+ NLA NGV+NA+V+   S RF    L    R  +       E A  RT   P    G R       A   A +         E      V+LVDPPR GLD  T ++VS ++ +LYISC P +LL +L RG                    GL+ TH VV   + DHF  T H+E AV L+RR   E
Sbjct:  213 SASNHTVALATHFSHVLAVEIDRRLCAAAEHNLASNGVRNATVLAADSGRFCRSLLRKLDRGAK-------EAAAGRTAAPPDAELGGREEPTQPAAEAAAPSANPTTRWLEEARGRTDVILVDPPRCGLDADTLRLVSYFDHVLYISCNPEALLDNLQRG--------------------GLLQTHAVVRSAIFDHFAYTPHLECAVLLRRRTLCE 402          

HSP 2 Score: 74.3294 bits (181), Expect = 1.612e-10
Identity = 83/320 (25.94%), Postives = 120/320 (37.50%), Query Frame = 0
Query:   34 DQYETSLQRKVDELRSIFFPYWS-CEPTIFRSPPVHYRLRAKFGIGRVLPQASHPAGPMAGITESARTGAPQGSPGKLCYLMWGADKKLVVISSFPLASRRINDLMPRLLLALGEGPLILRRSLRAVNFLDTLAGDTLIALMYETAWAEGGKAAKEEWVAAAREHVKEALGVQ---VVGRGKRVALPVDRAYVLEEFCLSPPPPASSRGASPLPPYAPGTGGADTGRDPRGGPRRASAGVPHPCPSILRYKQWDGAFSNPNGCMALHTLRWLCARAD----AVLQRGDAPRGVQATGGEADERGRE-----RQMEDGDRE 340
            + YE  LQ K   +RS+F    +  E  IF S P H+R RA+F + R                            G L + ++  D   V +  FP+ASR IN+LMPRLL A+      L   L A +FL T  GD L++L+Y       G+    +W             +    ++GR K   + +DR  V E                    YA   G   T R   G     SA +          ++W G+ SN    +A H    L    D    A  +   A  GV+     A + GR      R+++ G +E
Sbjct:   21 ESYEHQLQEKTSAMRSLFGAVLAGVEVQIFPSMPAHFRQRARFAMCRF--------------------------DGVLKFALFDKDAPRVAVDRFPVASREINELMPRLLAAVASSE-ALSTGLEACHFLGTQTGDMLVSLIY-------GEPMHSDWRGRRAAAEAMRAELSLPALLGRAKGTRVVLDRDSVDE-------------------TYALHDGRRLTYRQVEGSFSNPSAAI----------RRWTGSASNHTVALATHFSHVLAVEIDRRLCAAAEHNLASNGVRNATVLAADSGRFCRSLLRKLDRGAKE 277          
BLAST of EWM23648.1 vs. NCBI_GenBank
Match: gi|302841023|ref|XP_002952057.1| (hypothetical protein VOLCADRAFT_118051 [Volvox carteri f. nagariensis] >gi|300262643|gb|EFJ46848.1| hypothetical protein VOLCADRAFT_118051 [Volvox carteri f. nagariensis])

HSP 1 Score: 110.923 bits (276), Expect = 2.975e-22
Identity = 75/218 (34.40%), Postives = 101/218 (46.33%), Query Frame = 0
Query:  390 PAFDLLELFCGGGNHTVALSRKFRRVVGVEIDRRLVAAAKENLALNGVKNASVIQIPSERFHPERLGHYRRQQEQEEEHDGEGARARTMLGPGKRVASAGGEAGLTARAQGMGQSPPGEDDPSFRVVLVDPPRAGLDRHTRKMVSKYEDILYISCAPLSLLRDLRGESEEERRQSADRKFLSLAGFGLVHTHKVVDMCVLDHFPGTRHIEVAVHLQRR 607
            P  DLLEL+CG GN TV L++ FRRVV  E+ +  V AA+ NL  NGV N  + ++ SE F                        A TM   G R            R +G+G   P E +   R +LVDPPRAGLD  T +++ +++ I+YISC P +L  +LR                      +  THK+      D FP T H+E  V+L RR
Sbjct:  297 PQDDLLELYCGNGNFTVPLAQNFRRVVATEVAKSSVEAARFNLEANGVSNVFLARMASEEF------------------------AETMRSRGSR-----------RRLEGLG---PWE-ELRLRTILVDPPRAGLDGFTVELLKEFDRIVYISCNPETLHANLR---------------------AIATTHKIARFAAFDQFPYTHHLECGVYLTRR 454          
The following BLAST results are available for this feature:
BLAST of EWM23648.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104801|gb|EWM23648.1|0.000e+0100.00trna (uracil-5-)-methyltransferase [Nannochloropsi... [more]
gi|553188667|ref|XP_005854838.1|3.949e-12197.81trna (uracil-5-)-methyltransferase, partial [Nanno... [more]
gi|553188670|ref|XP_005854839.1|3.853e-6699.07trna (uracil-5-)-methyltransferase, partial [Nanno... [more]
gi|255080342|ref|XP_002503751.1|1.996e-2539.53predicted protein [Micromonas commoda] >gi|2265190... [more]
gi|255073729|ref|XP_002500539.1|9.463e-2538.18predicted protein [Micromonas commoda] >gi|2265158... [more]
gi|515481214|ref|WP_016914482.1|2.311e-2335.65tRNA (uridine(54)-C5)-methyltransferase TrmA [Halo... [more]
gi|746110342|ref|WP_039176204.1|2.712e-2335.19tRNA (uracil(54)-C(5))-methyltransferase [Halomona... [more]
gi|1173338847|ref|WP_081195611.1|3.992e-2334.72tRNA (uridine(54)-C5)-methyltransferase TrmA [Halo... [more]
gi|551611175|ref|XP_005786680.1|2.905e-2238.71hypothetical protein EMIHUDRAFT_449313 [Emiliania ... [more]
gi|302841023|ref|XP_002952057.1|2.975e-2234.40hypothetical protein VOLCADRAFT_118051 [Volvox car... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7040rna7040Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications