rna7037, rna7037 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7037
Unique Name	rna7037
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1197
Alignment location	CM002470.1:296275..298891 -

Link to JBrowse

Properties


Property Name	Value
Product	Choline transporter
Orig transcript id	gnl\|cribi\|Naga_100191g9.7757.mrna
Orig protein id	gnl\|cribi\|Naga_100191g9.7757
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:296275..298891 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100191g9	gene6803	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23647.1	cds7020	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7037	rna7037-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:296275..298891-
coding sequence from alignment at CM002470.1:296275..298891-

mRNA sequence

>rna7037 ID=rna7037|Name=rna7037|organism=Nannochloropsis gaditana|type=mRNA|length=1197bp
ATGCGGAGTGGAGTCCCTGGACCCCGCAGGAGGTTATCGTATGCTCGACA
AACGGTCACAGCCCCGGGCTTCCAAGCACTGAGGGTGTACGTTGCCGGAA
AGGCATTACGTAACAAGATCAGTGATAGAAGTGATAGAGGTGCATCGGGT
TTCGAAGAGATGCTGTCTTTTGATTTTGTAGAGGTTTTCGCTCAAACTGC
CCAGCTCTTCCATATACATACCCAAAGGGAAAACATGTCTCTTCCGGATA
AATTGCCACCTCTACCCGTCTCGGAGGCGTCAAGACCACCATCAAAATTT
CTCATTAATCTGGTTATGGCAACCATATTTGCTACAACTTTGTCGTATCG
AGGTCTGTGGAAGCACTCCCTTTCCAAGAGTGGCGCATTGGCTGCTTGGG
TGGTTGGCTTTTTAAGCATGGGGGCATCTCTCCGGTTCGGTGCTCTGATG
ATTCTATTTTACCAAAGCAGCTCAATGCTCACCAGGTATCGATGTGAAAC
GAAGGCACTTTTGGAAGAAGATCACAAGCAAGGGGGCCAACGTTCTGCAG
CCCAAGTCCTTGCCTGCTCTTTTTTGGGCACCCTGATCGCGGTTGCCTTC
GTCTTCCTCCTCGGCCCCGACGACCTCCCCTTAAATTTTGAAGCGAGCCC
ATTGCGTAGTCGACTTCTCTGTGCGTACGTGGGTCACTATGCATGTTGCA
ACGGGGACACGTGGGCGTCCGAAATTGGCATATTGAGTCCTTCATCCCCG
CGCTTGGTCACGGCCGGCTTTCGACGGGTCGTGCCCAGGGGTACGAACGG
TGGTATGTCCTTGACGGGCACCTTGGCATCTATCGCTGGAGGTGCACTGA
TTGGGACCGGTCACAGCATCCTCGGTTTTGTCCTTGGAATGCCAGATGAC
GCCTCCGGGGCTGGATGGTGCCCAGGCTGGTTCTTCATGACTGTGATCGG
GGCCGCATGTGGTTTCATCGGCTCTTTGTCCGACTCGATCCTGGGTGGAC
TTTTCCAAGCGACCTGGTACTGCGCGGAAAAGAAGAGGGTGGTGAAGCAT
CCGACAGCTCAGGAGCGGCAAGGGCGGGGCGCGGAGCAGGTGCGCTTAAT
CAGCGGCCTGGATCTGTTGAGCAACGAGCATGTAAACCTGATATCCATCG
CGCTTTCCACGGCTCTCGCCCCTGTTTTGGGGCGTTTGCTCTGGTGA

protein sequence of rna7037

>rna7037-protein ID=rna7037-protein|Name=rna7037|organism=Nannochloropsis gaditana|type=polypeptide|length=682bp
MADLEDLEIFSISLGGLLIVISLILCCSAACLACCGGAFTPLCCWSGWIL
ACCSWRDSSYRTIGDRNFTTITVIPPPPVAVAPYNNMNSRSYPVIGTVVE
ERSGPSQAYHSQAEMELSKGILSGTVEGVVVEGSAPPAPLASLPQCLPPS
DASLPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLLQACFL
ITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLG
LVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCL
LFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVAL
HFLWVVIWAVAATGVYTTVAAESHGNHLQSGRQYGAGQEALLGFFLLFSL
YWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCK
GSLAVSLIETCRVGLRGLGGVGLGGSERGPGCCPCCLCPGCCFCGCRWVC
GCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWE
VILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLPEAFEALPASATFVAL
AGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVF
DQWRERGVVVDVGCSQDGRGERVPLNVAQVSI

mRNA from alignment at CM002470.1:296275..298891-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7037 ID=rna7037|Name=rna7037|organism=Nannochloropsis gaditana|type=mRNA|length=2617bp|location=Sequence derived from alignment at CM002470.1:296275..298891- (Nannochloropsis gaditana)
CGATTGTGCCCGGTTGTCGACTGCCGAGGCCGCCGAACGCTTCAATCCAA
TGGTAAGGCCAGGGCACCACCAAATAGTCTTCCAATGTATCGGCTATGTG
CGCATGAGTGTGACAGGAACACGCGTAAGTTGCATTTTTCCTCGGGCTCC
AGAATCCTCCAGACTCCTCGCTCGTTCAGAGACATGCGCCTGGCGTGGGC
AACGGTTCGACCTCCCCTGGGAAGGTCCGCGCTTCCCGAGGTGTTAACTT
TACAAACGAGCACGATCACAATGCTCACCTCCGAACCTTTAACATCACAG
AGTGAATACCCTTTACATGTCCTGAATAGCCTAGCCGCGTTCTCGTGCTC
ATATTATTTATTGCGCTTAGGTTGGGCTTCTGGACCTAATGGCCGATTTG
GAGGACCTGGAGATCTTCTCTATCTCCCTTGGAGGCCTGCTTATCGTCAT
TTCCCTTATACTGTGTTGCTCGGCAGCTTGCCTAGCATGCTGTGGTGGCG
CTTTCACCCCGCTCTGTTGTTGGTCTGGTTGGATCCTTGCATGCTGCTCC
TGGAGGGACAGCTCTTATCGCACCATTGGAGACAGGAATTTTACTACAAT
AACAGTGATCCCGCCGCCACCTGTCGCCGTCGCCCCTTACAACAATATGA
ATTCGAGATCATATCCTGTCATCGGAACGGTGGTGGAGGAGCGCTCTGGC
CCCTCTCAAGCCTACCATAGTCAGGCAGAGATGGAGCTCTCCAAAGGGAT
TCTTTCCGGCACCGTGGAAGGCGTGGTGGTGGAAGGCAGCGCCCCGCCCG
CCCCGCTCGCATCCCTGCCCCAGTGTCTGCCTCCATCGGATGCTTCCCTT
CCTCACCACGCCCCTTCCTCGCATGGCCATGCAGCCCATGTCATAATGGC
CGACCTGCATGCCACTCCCCCCCCCCAGACGTCTGTCCCCCGGGACTGGG
GGTTTTTGGTCCTTTTTCTCCTCCAAGCCTGCTTCCTCATCACCCTCGCT
CTTCGCCTGGGCCTTCCCTCCCTCGGACTCTGGGAGCACGCCTTGGTCGA
CGACGCCAGTCGGACCGCGCCCCTCGCCCACTCTCCCGAGACCGTCGCCG
TCGCTCGCAACCTCCTCTGCCTGGCGGCGGGCCTTGGTCTGGTCGCGAAC
GTCCTGTCCTTTGTGTGGTTGGGGTTCATGCTCAATCTGTCCACAGCCCT
TATCACCAGCACCGTTTTTCTCAGCATAATGAGCGCCGGCCTCCTCGCCC
TCCTCTCCCTCCTCTCCGGCCACCTGATCGGCTGCCTGCTCTTCGCCTCC
CTGGCCGTCGCCGGCCTCTGTCTCCTCCGCGAGGACCCGTCTCGCGTCTT
GGTCTCTTCTAGCATCCTGGGGACCGCCTGTCGCGCCGTGGCCGAGTCTC
GGAATCTTTTCGGGGCCGCCTACCTCCTCGTGGCTCTGCACTTTCTCTGG
GTCGTGATATGGGCCGTGGCCGCCACGGGCGTGTATACTACCGTCGCTGC
CGAGTCCCACGGGAATCACTTGCAGTCCGGTCGCCAGTATGGAGCCGGGC
AGGAGGCGCTTCTAGGCTTCTTTCTGCTCTTCTCCCTGTACTGGGGCGCT
AGCGTCTGTCAGAACACCTTGCGCTGCACCGTGGTCGGGGCCGTGGCGGC
CTGGTGGTATGTTCCCGGCCCGGCCCGGGATTCCGTGAGCCTAGCTTTGG
CTCGGGCGACGGGGCCCTCGCTGGGAAGCGTTTGTAAGGGCTCATTGGCG
GTCTCGTTGATCGAGACGTGCAGGGTCGGCCTGCGCGGCCTGGGGGGCGT
GGGCTTGGGCGGGAGCGAACGGGGGCCGGGTTGCTGTCCTTGCTGCCTGT
GCCCGGGGTGCTGTTTCTGTGGCTGCCGCTGGGTGTGTGGGTGTGTGCTG
GACTACCTGCTGGGTTGCGTGGAGGCGGCCTGGCGGGCCTTCAACCGGTT
CGCCTTCGTCTTCGTAGGGGTCTGGGGCTACCCGTACAGCGAAGCTGCCC
GTCTGGCGCTTCGTTTGTTCGAAGCGAGGGGATGGGAAGTGATCCTCAAC
GATTATCTGATCGGCAATGTCCTCTTCCTCGGCTGCATGCTCATGGGCGG
CGGCACGGCCTTTTTAGGGGTCATGACAACGCGGCTCCTGCCCGAGGCCT
TCGAGGCCCTCCCCGCCTCCGCCACCTTCGTCGCCCTGGCGGGCTTCCTG
ATCGGTCTGGGTAATTGCCTGCTCCTTGTGAGCGTGGTGTCGTCGGCCGT
GGACACGGTCTTCGTCTGCTTTGCGGCAAGTCCTCACGTCTTGCAAACAA
ATCGCCCAGCGGAGTACGCGCATTTGCGCCATGTATTTGACCAATGGAGG
GAGAGAGGTGTTGTAGTGGATGTGGGCTGCTCACAGGATGGGCGAGGGGA
GAGGGTGCCGTTGAATGTGGCTCAGGTGTCGATATGAGGTAACGAAGAGC
GGGGAGGAATGAGAGGAGAGTGGTGATGATGTTGGGAGAAGGAACAAGGG
CACTAGAAGAATGCCATGTCTTCGACAGGGGGGCTAGATTGAAGAAAGAT
TATACAGTGCATTGTTTGATAGGAAAGCCCAAGAGGATGAAAGTAATCAA
GACTTCTGAGAACGGAA

Coding sequence (CDS) from alignment at CM002470.1:296275..298891-

>rna7037 ID=rna7037|Name=rna7037|organism=Nannochloropsis gaditana|type=CDS|length=2049bp|location=Sequence derived from alignment at CM002470.1:296275..298891- (Nannochloropsis gaditana)
ATGGCCGATTTGGAGGACCTGGAGATCTTCTCTATCTCCCTTGGAGGCCT
GCTTATCGTCATTTCCCTTATACTGTGTTGCTCGGCAGCTTGCCTAGCAT
GCTGTGGTGGCGCTTTCACCCCGCTCTGTTGTTGGTCTGGTTGGATCCTT
GCATGCTGCTCCTGGAGGGACAGCTCTTATCGCACCATTGGAGACAGGAA
TTTTACTACAATAACAGTGATCCCGCCGCCACCTGTCGCCGTCGCCCCTT
ACAACAATATGAATTCGAGATCATATCCTGTCATCGGAACGGTGGTGGAG
GAGCGCTCTGGCCCCTCTCAAGCCTACCATAGTCAGGCAGAGATGGAGCT
CTCCAAAGGGATTCTTTCCGGCACCGTGGAAGGCGTGGTGGTGGAAGGCA
GCGCCCCGCCCGCCCCGCTCGCATCCCTGCCCCAGTGTCTGCCTCCATCG
GATGCTTCCCTTCCTCACCACGCCCCTTCCTCGCATGGCCATGCAGCCCA
TGTCATAATGGCCGACCTGCATGCCACTCCCCCCCCCCAGACGTCTGTCC
CCCGGGACTGGGGGTTTTTGGTCCTTTTTCTCCTCCAAGCCTGCTTCCTC
ATCACCCTCGCTCTTCGCCTGGGCCTTCCCTCCCTCGGACTCTGGGAGCA
CGCCTTGGTCGACGACGCCAGTCGGACCGCGCCCCTCGCCCACTCTCCCG
AGACCGTCGCCGTCGCTCGCAACCTCCTCTGCCTGGCGGCGGGCCTTGGT
CTGGTCGCGAACGTCCTGTCCTTTGTGTGGTTGGGGTTCATGCTCAATCT
GTCCACAGCCCTTATCACCAGCACCGTTTTTCTCAGCATAATGAGCGCCG
GCCTCCTCGCCCTCCTCTCCCTCCTCTCCGGCCACCTGATCGGCTGCCTG
CTCTTCGCCTCCCTGGCCGTCGCCGGCCTCTGTCTCCTCCGCGAGGACCC
GTCTCGCGTCTTGGTCTCTTCTAGCATCCTGGGGACCGCCTGTCGCGCCG
TGGCCGAGTCTCGGAATCTTTTCGGGGCCGCCTACCTCCTCGTGGCTCTG
CACTTTCTCTGGGTCGTGATATGGGCCGTGGCCGCCACGGGCGTGTATAC
TACCGTCGCTGCCGAGTCCCACGGGAATCACTTGCAGTCCGGTCGCCAGT
ATGGAGCCGGGCAGGAGGCGCTTCTAGGCTTCTTTCTGCTCTTCTCCCTG
TACTGGGGCGCTAGCGTCTGTCAGAACACCTTGCGCTGCACCGTGGTCGG
GGCCGTGGCGGCCTGGTGGTATGTTCCCGGCCCGGCCCGGGATTCCGTGA
GCCTAGCTTTGGCTCGGGCGACGGGGCCCTCGCTGGGAAGCGTTTGTAAG
GGCTCATTGGCGGTCTCGTTGATCGAGACGTGCAGGGTCGGCCTGCGCGG
CCTGGGGGGCGTGGGCTTGGGCGGGAGCGAACGGGGGCCGGGTTGCTGTC
CTTGCTGCCTGTGCCCGGGGTGCTGTTTCTGTGGCTGCCGCTGGGTGTGT
GGGTGTGTGCTGGACTACCTGCTGGGTTGCGTGGAGGCGGCCTGGCGGGC
CTTCAACCGGTTCGCCTTCGTCTTCGTAGGGGTCTGGGGCTACCCGTACA
GCGAAGCTGCCCGTCTGGCGCTTCGTTTGTTCGAAGCGAGGGGATGGGAA
GTGATCCTCAACGATTATCTGATCGGCAATGTCCTCTTCCTCGGCTGCAT
GCTCATGGGCGGCGGCACGGCCTTTTTAGGGGTCATGACAACGCGGCTCC
TGCCCGAGGCCTTCGAGGCCCTCCCCGCCTCCGCCACCTTCGTCGCCCTG
GCGGGCTTCCTGATCGGTCTGGGTAATTGCCTGCTCCTTGTGAGCGTGGT
GTCGTCGGCCGTGGACACGGTCTTCGTCTGCTTTGCGGCAAGTCCTCACG
TCTTGCAAACAAATCGCCCAGCGGAGTACGCGCATTTGCGCCATGTATTT
GACCAATGGAGGGAGAGAGGTGTTGTAGTGGATGTGGGCTGCTCACAGGA
TGGGCGAGGGGAGAGGGTGCCGTTGAATGTGGCTCAGGTGTCGATATGA

Synonyms

Publications