EWM23647.1, cds7020 (CDS) Nannochloropsis gaditana

Overview
NameEWM23647.1
Unique Namecds7020
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:296455..298503 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23647.1
ProductCholine transporter
Orig transcript idgnl|cribi|Naga_100191g9.7757.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:296455..298503 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like
Homology
BLAST of EWM23647.1 vs. NCBI_GenBank
Match: gi|585104800|gb|EWM23647.1| (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 1353.58 bits (3502), Expect = 0.000e+0
Identity = 682/682 (100.00%), Postives = 682/682 (100.00%), Query Frame = 0
Query:    1 MADLEDLEIFSISLGGLLIVISLILCCSAACLACCGGAFTPLCCWSGWILACCSWRDSSYRTIGDRNFTTITVIPPPPVAVAPYNNMNSRSYPVIGTVVEERSGPSQAYHSQAEMELSKGILSGTVEGVVVEGSAPPAPLASLPQCLPPSDASLPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLLQACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAAESHGNHLQSGRQYGAGQEALLGFFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLPEAFEALPASATFVALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRERGVVVDVGCSQDGRGERVPLNVAQVSI 682
            MADLEDLEIFSISLGGLLIVISLILCCSAACLACCGGAFTPLCCWSGWILACCSWRDSSYRTIGDRNFTTITVIPPPPVAVAPYNNMNSRSYPVIGTVVEERSGPSQAYHSQAEMELSKGILSGTVEGVVVEGSAPPAPLASLPQCLPPSDASLPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLLQACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAAESHGNHLQSGRQYGAGQEALLGFFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLPEAFEALPASATFVALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRERGVVVDVGCSQDGRGERVPLNVAQVSI
Sbjct:    1 MADLEDLEIFSISLGGLLIVISLILCCSAACLACCGGAFTPLCCWSGWILACCSWRDSSYRTIGDRNFTTITVIPPPPVAVAPYNNMNSRSYPVIGTVVEERSGPSQAYHSQAEMELSKGILSGTVEGVVVEGSAPPAPLASLPQCLPPSDASLPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLLQACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAAESHGNHLQSGRQYGAGQEALLGFFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLPEAFEALPASATFVALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRERGVVVDVGCSQDGRGERVPLNVAQVSI 682          
BLAST of EWM23647.1 vs. NCBI_GenBank
Match: gi|553188664|ref|XP_005854837.1| (hypothetical protein NGA_2014000 [Nannochloropsis gaditana CCMP526] >gi|422294217|gb|EKU21517.1| hypothetical protein NGA_2014000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1335.86 bits (3456), Expect = 0.000e+0
Identity = 674/682 (98.83%), Postives = 676/682 (99.12%), Query Frame = 0
Query:    1 MADLEDLEIFSISLGGLLIVISLILCCSAACLACCGGAFTPLCCWSGWILACCSWRDSSYRTIGDRNFTTITVIPPPPVAVAPYNNMNSRSYPVIGTVVEERSGPSQAYHSQAEMELSKGILSGTVEGVVVEGSAPPAPLASLPQCLPPSDASLPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLLQACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAAESHGNHLQSGRQYGAGQEALLGFFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLPEAFEALPASATFVALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRERGVVVDVGCSQDGRGERVPLNVAQVSI 682
            MADL+DLEIFSISLGGLLIVISLILCCSAACLACCGGAFTPLCCWSGWILACCSWRDSSYRTIGDRNFTTITVIPPPPVAVAPYNNMNSRSYPVIGTVVEERSGPSQAYHSQAEMELSKG LSGTVEGVVVEGSAPPAPLASLPQCLPPSDASLPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLL ACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLL LAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAAESHGNHLQSGRQYGAGQEALLGFFLLFSLYWGA VCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGS+RGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPY EAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGG TAFLGVMTTRLLPEAFEALPASATFVALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRERGVVVDVGCSQDGRGERVPLNVAQVSI
Sbjct:    1 MADLDDLEIFSISLGGLLIVISLILCCSAACLACCGGAFTPLCCWSGWILACCSWRDSSYRTIGDRNFTTITVIPPPPVAVAPYNNMNSRSYPVIGTVVEERSGPSQAYHSQAEMELSKGTLSGTVEGVVVEGSAPPAPLASLPQCLPPSDASLPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLLHACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLSLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAAESHGNHLQSGRQYGAGQEALLGFFLLFSLYWGAGVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSQRGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYGEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGVTAFLGVMTTRLLPEAFEALPASATFVALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRERGVVVDVGCSQDGRGERVPLNVAQVSI 682          
BLAST of EWM23647.1 vs. NCBI_GenBank
Match: gi|397606058|gb|EJK59191.1| (hypothetical protein THAOC_20618 [Thalassiosira oceanica])

HSP 1 Score: 191.045 bits (484), Expect = 1.240e-49
Identity = 129/393 (32.82%), Postives = 199/393 (50.64%), Query Frame = 0
Query:  271 LITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTT---VAAESHGNHLQSGRQYGAGQEALLGFFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSL----ALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLPEAFEALPASATFVALA-GFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRE 655
            LI  +V  S++ +GL+A +S   G + G +      +  LC       R+  +++ L T   AV  +  +   +Y+LVA  F ++++W VA  GVY     +  ++ GN   +G Q   G      F LL +L+W   V QNT+  T+ G V+ WW+VP  A    S     +  R+T  S GS+C GSL V++I+  RV +          S+   GC    LC   C              LL C+E     FN+FA+++VG++GY Y EA +  + LF+ +GW VI+ND L+ NVLFL  +++GG T  +G++   + P  F+    S   +A    FL+GL    + +SVV SAV+TV V FA  P   + N P E +H   + + WR+
Sbjct:  137 LIQISVLFSLVLSGLMAAVSFFYGQIWGGIFGIIFFLLSLCYTYYVWRRIPFAAANLNTGLTAVKANSGVVVMSYVLVAASFCYMILWMVALVGVYDKLNLITTDAQGNVQVTGDQLNWGYF----FLLLVALFWSEQVFQNTIHATIAGVVSTWWFVPEEANSCCSKGIWGSFIRSTTTSFGSICFGSLLVAIIKALRVMVES------ARSDSEGGCAAFLLCLVEC--------------LLRCLEGILEYFNKFAYIYVGMYGYSYLEAGKNVMTLFQQKGWTVIINDDLVSNVLFLFVLIIGGLTGCVGLVLNEINPLWFQGYGGSPMAIAFGFMFLVGLIIASITMSVVDSAVNTVIVAFAEGPAEFEENHP-ELSH--QMKEGWRK 502          
BLAST of EWM23647.1 vs. NCBI_GenBank
Match: gi|695378527|ref|XP_009516302.1| (hypothetical protein PHYSODRAFT_552564 [Phytophthora sojae] >gi|348689213|gb|EGZ29027.1| hypothetical protein PHYSODRAFT_552564 [Phytophthora sojae])

HSP 1 Score: 186.808 bits (473), Expect = 4.935e-48
Identity = 151/527 (28.65%), Postives = 242/527 (45.92%), Query Frame = 0
Query:  144 PQCLPPSDASLPHHAPSSHGHAAHVIMADLHATPP-PQTSVPRDWGFLVLFLLQACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAA-----ESHGNHLQSGRQYGA---GQEALLG-FFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLG-GSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLP-EAFEALPASATF---VALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRE 655
            P  + PS        PSS        +  L   PP P+ +   DW +  LFL     L  LA   G+P       AL +D  R       P   +VA  ++ +   LG    +LS  W+  ++  + ++I   ++L++      A+ +  S +    L F  +A   +  +    +R+  +S+ L  AC A+ +  ++F  A++LV     W+ +WAVAA G++          +   +    GR +G    G  A +  F++L S+YWG  V QN L CT  G VA WWY P   + +V  AL R+   S GS+C GSL V++++     L+ +  +     +E       C  C   C   C      +++Y           FN++A+V+VGV+GYP+  + +  + LF  RGW  ++ND L    L  G + +G  T  +G++  R  P E F AL +  +    +AL GF++G    L+L  V+ +A+ T+FVCFA  P     N P EY  L      WR+
Sbjct:   10 PMLMSPSGGKERRSPPSS-------AVNSLRLEPPAPKCN---DWLYAALFLSNVVALAALAFWKGVP-------ALKEDMGRNRSDGRVPTGHSVAGTMIAVLCVLG---TLLSLAWIKLLMAYAASMIRVALWLNVFMVLGFAVTTF-SVNAWAALAFLLMAAINVWYIYAVQNRIGFASANLKAACTALKQHSSVFAVAFVLVLQQLAWMFLWAVAALGMHQIFLEADPDCDREIDLASRGRNHGGLCVGLPAYVALFYMLVSVYWGQQVLQNILTCTTAGVVATWWYQPHAQKATVG-ALYRSVTTSFGSICFGSLIVAVLQ----ALKTMANMARRRANEENNNGLACLACMAECIVSC---LADIMEY-----------FNQWAYVYVGVYGYPFRTSGKAVMDLFNNRGWTAVINDDLTSGALSFGALGIGIVTCCVGLLMVRFSPVEWFTALGSRMSVYGTMALIGFMVGFTMALILAHVIIAALHTIFVCFAEDPVAFNRNHPKEYDDL---VSGWRQ 493          
BLAST of EWM23647.1 vs. NCBI_GenBank
Match: gi|224002216|ref|XP_002290780.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974202|gb|EED92532.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 185.267 bits (469), Expect = 1.113e-47
Identity = 128/406 (31.53%), Postives = 199/406 (49.01%), Query Frame = 0
Query:  249 LGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAAESHGNHLQSGRQYGAGQEALLGFFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVP---GPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLPEAFEALPASATFVALA---GFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRH 648
            +GLVA +LS V L  M+ +   LI +++FL ++ +G + ++S L G++ G ++     +  +C  +   SR+  +S  L TAC A+ ++  +   AY  +AL F W ++W+++  GV+  V  ES     Q+   +G      L FF          V QN+  C V G V  WW+ P   G     V  A  R    S GS+C GSL V++++  R          L  S R                    +  C+   +L C+E+    FN++AFV+VG++GY Y EA +  + LF+ RGWE I+ D LI NV F   + +GG  A  G++  +  PE FE  P S    A     GF++GL    +++S ++SAV+TV VCFA  P   + N P     +R 
Sbjct:   99 IGLVAIILSGVSLPIMMCMPELLIKASLFLMLILSGAMMVMSFLVGNIFGGIIGVIFFLIFMCYTKAVWSRIPFASVNLLTACTAIKKNLGVVIVAYFFIALAFGWSLLWSISVMGVWDEVIKESENQFEQNSVNWGYLFLLFLSFFFT------HQVIQNSTHCVVAGTVGTWWFSPEDSGCCSSGVVGAFIRTMTTSFGSICFGSLLVAIVQATR---------ALADSARNND---------------NQILVCIAQCILSCLESILEYFNKWAFVYVGLYGYSYIEAGKSVITLFKNRGWEAIIADDLISNVFFFISLCVGGLCAAFGLIFEQTNPEWFENAPISTNVGAQCAGLGFVVGLVLTSIMMSTIASAVNTVIVCFAEGPAEFEANHPELSRKMRE 474          
BLAST of EWM23647.1 vs. NCBI_GenBank
Match: gi|953497552|emb|CEG41039.1| (hypothetical protein L915_11285 [Plasmopara halstedii])

HSP 1 Score: 185.267 bits (469), Expect = 1.380e-47
Identity = 147/494 (29.76%), Postives = 228/494 (46.15%), Query Frame = 0
Query:  177 PPPQTSVPRDWGFLVLFLLQACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAA-----ESHGNHLQSGRQYGA------GQEALLGFFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLP-EAFEAL---PASATFVALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRE 655
            P   T    D  F V+FL     L  LA   GLP+L   E    + +    P  HS     +A  LLC+      +   LS  W+  +   ++++IT  ++L++      A+ S  S ++   L  A LA   +C +    +R+  +S+ L  AC  + E   +F  A++LV     W+ +W VA+ G++          +   +    GR  G          A+  F++L  LYWG  V QN L CT  G +A WWY P   + +V  AL R+   S GS+C GSL V++++  R                G  C  C             +  CVL +L G +E      N++A+V+VGV+GYP+ ++ +  + LF  RGW  ++ND L  + L  G M +G  T  +G++  R  P E F AL    ++ + +AL GF++GL   L+L  V+ +A+ T+FVCFA  P     N P  Y  L      WR+
Sbjct:   34 PESSTIKCNDAFFAVMFLANVIILSILAFFKGLPTLT--EEMDKNRSDGRIPNGHSVALTMIA--LLCV------IGTALSLAWVKLLTTYASSMITIALWLNVGMVLAFAV-STFSVNVWAALFLAGLAALNVCYIYAVQNRIGFASANLKAACAGLKEHSAIFAVAFVLVLQQLAWMFLWYVASLGMHQLFLEADPNCDREIDLASRGRNRGGLCVEFPAYAAI--FYMLVGLYWGQQVLQNILTCTTAGVIATWWYQPNAQKATVG-ALYRSITTSFGSICFGSLIVAVLQALRTMADAAKRRAREERSGGLACLAC-------------MAECVLSFLAGVMEYV----NQWAYVYVGVYGYPFRKSGKAVMDLFTNRGWTAVINDDLTSSALTFGAMGVGIVTCCVGMLMVRYSPMEWFSALGSRTSAYSSMALIGFVVGLSVALILAHVIIAALHTIFVCFAEDPVAFNRNHPKHYDEL---VAGWRQ 493          
BLAST of EWM23647.1 vs. NCBI_GenBank
Match: gi|301104838|ref|XP_002901503.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100507|gb|EEY58559.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 184.882 bits (468), Expect = 1.842e-47
Identity = 153/528 (28.98%), Postives = 249/528 (47.16%), Query Frame = 0
Query:  142 SLPQCLPPSDASLPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLLQACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAA-----ESHGNHLQSGRQYGA---GQEALLG-FFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLG-GSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLP-EAFEALPASATF---VALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRE 655
            S P  + PS        PSS  ++  +       +P  + +   D  F V+FL     L  LA   G+P       AL +D  R       P+  +VA  ++ +   L +V  VLS  W+  +++ ++++I   ++L++      A+ S  S ++   L F  +A   +  +    +R+  +S+ L  AC A+ +   +F  A++LV    +W+++W VA+ G++          +   +    GR +G    G  A    F++L S+YWG  V QN L CT  G VA WWY P   + +V  AL R+   S GS+C GSL V++++     LR +  +     SE   G   C  C   C  GC      +++Y+           N +A+V+VGV+GYP+  + +  + LF  RGW  ++ND L  + L  G + +G  T  +G++  R  P E F AL +       +AL GF++GL   L+L  V+ +A+ T+FVCFA  P     N P EY  L      WR+
Sbjct:    8 SDPMLMSPSGGKDRRSPPSSAVNSLRL------ESPAAKCN---DAFFAVMFLSNVLVLGILAFWKGVP-------ALKEDMGRNRSDGRIPQGHSVAWTMIGI---LCVVGTVLSLAWIKLLMSYASSMIRVALWLNVGMVLAFAV-STFSVNVWAALFFLVMAAINVWYIYAVQNRIGFASANLKAACAALQQHSAVFVVAFVLVLQQLVWMLLWGVASLGMHKVFVEADPDCDREIDLASRGRSHGGLCVGLPAYAALFYMLVSVYWGQQVLQNILTCTTAGVVATWWYQPNAQKATVG-ALYRSVTTSFGSICFGSLIVAVLQ----ALRTMADMAKRRASEENNGGLACLACMAKCILGC---LANIVEYI-----------NHWAYVYVGVYGYPFRTSGKAVMDLFNNRGWTAVINDDLTSSALSFGALGVGIVTCCVGMLMVRFSPVEWFTALGSRMGVYGTMALIGFMVGLSMALILAHVIIAALHTIFVCFAEDPVAFNRNHPKEYEDL---VAGWRQ 493          
BLAST of EWM23647.1 vs. NCBI_GenBank
Match: gi|325183217|emb|CCA17676.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 184.882 bits (468), Expect = 2.678e-47
Identity = 144/500 (28.80%), Postives = 229/500 (45.80%), Query Frame = 0
Query:  174 HATPPPQTSVPRDWGFLVLFLLQACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSL--LSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTTVAAESHGN---HLQSGRQY--------GAGQEALLGFFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSL-ALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLP----EAFEALPASATFVALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRE 655
            H  PP + +   D    +LFL QA  +   A+  GLP       A++D   R     H  +      N   L  G+      LS  W+  +++ + ++I  T++ ++   GL+ +  L       +  L+F  LA   +C +    +R+  +S+ L  AC A  +   +F  A LLV     W+ +W+ +A GVY     ESH N    L+   +Y        G      + F +L SLYWG  V QN L CTV G VA WWY  G   D +++ AL R+   S GS+C GSL VS+++  +   R L        E       C               GC+ + +LGC+E+     N +A+++VG++G  +  +A+  + LF +RGW  ++ND L  + L  G + +G   + +G++     P    +AF    +    +  A F+ G    + + +VV +++ TVFVCFA  P  LQ N P EY  L      WR+
Sbjct:   40 HTAPPSRCN---DLWAAILFLTQAIAIGFFAVWKGLP-------AVLD---RMEKSKHGSKEYDFG-NFFILLMGIFATTVALSGFWMKLLMSYAESMIRVTLWCNV---GLVIVFGLGTFPASPVASLIFLLLAAVNICYIYAVQNRIGFASANLKCACAATIKFTGVFWVALLLVIQQIFWLTLWSTSAIGVYGMFK-ESHPNCQGFLKDNTRYNVDASGDCGGAGTGFIVFAMLISLYWGQQVLQNILTCTVAGVVATWWYRSG--EDGITVGALYRSVTTSFGSICLGSLFVSILQAMQTMARMLRE---KAREEDNAALACV--------------GCLAECILGCLESIMEYLNMWAYIYVGIYGRDFRTSAKAVMDLFRSRGWTAVINDDLASSALTFGAIGVGCVASCIGLIAVYFSPASWFDAFGTKKSGYGVIGAAAFIAGTSVSMTMANVVLASLHTVFVCFAEDPAALQHNHPREYEDL---ISGWRQ 499          
BLAST of EWM23647.1 vs. NCBI_GenBank
Match: gi|813141736|ref|XP_012199058.1| (hypothetical protein SPRG_19805 [Saprolegnia parasitica CBS 223.65] >gi|641536365|gb|KDO30254.1| hypothetical protein SPRG_19805 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 183.341 bits (464), Expect = 9.960e-47
Identity = 141/526 (26.81%), Postives = 242/526 (46.01%), Query Frame = 0
Query:  154 LPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLLQACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYT--------------------TVAAESHGNHLQSG-RQYGAGQEA---LLGFFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLGGSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLPEAFEALPASATFVALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRE 655
            +P   P+  G  AH+          P T+  RDW F VLF+     +I L +  G+P L   ++      S  +  +++  +    R +L ++  + +++ VLS V L FM+  ++ +IT +++  +    L  + +++       +L A   +  LC       R+  +++ L  A  A+ +  + +  A+ ++ L  +WV +WA AA G+                      ++++E   N   +  R   AG ++   +  FF+L S +WG    +N    TV G VA WWY    A  +   +L R    S GS+C GSL V++++  R          L    R  G    C+              C+L    GC+++    FNR+AFV+VG++GY +++A +  + LF  RG++ I+ND LIGNVL    + +G   A LG++ T  +  A      S   + + G + G+G  ++  SV+ SAV T+FVCFA  P  LQT+ P    H   +  +W  
Sbjct:   14 IPVGVPAPQGGTAHLGPVQSMKPQAPATTGYRDWPFAVLFIGNVAAMIVLLVMWGIPVL---QNTSSSTTSTKSTSSNNLLSDKEMRTVLIISGVMVVLSGVLSLVMLSFMVRFASGMITFSLWFGVGLNVLFTIYAVIKKQYALAILGAIFVLLSLCYAFAVRDRIPFAAANLRCAAAAIKKHASTYCVAFSMLVLQIVWVAVWATAALGLANHLNEKDATSSTRGKPDGSTCSISSECMSNKCSATYRCEAAGLKSASYVAYFFMLISFFWGMQTIKNVTHATVAGTVATWWYSTNSA-GATGASLKRTLTTSFGSICLGSLIVAILQALR---------QLAEEARRSGDAAACIAE------------CIL----GCLQSLMEYFNRWAFVYVGIYGYKFTDAGKAVIGLFRDRGFDTIINDDLIGNVLLFASLGVGFLCAGLGLVYT-YIDTANTTFNNSQIIIPVMGLIFGIGISIIPFSVIDSAVATIFVCFAEDPAALQTSHP---EHFNELMTEWHR 506          
BLAST of EWM23647.1 vs. NCBI_GenBank
Match: gi|567957919|gb|ETK83515.1| (hypothetical protein L915_11285 [Phytophthora parasitica] >gi|567986605|gb|ETL36924.1| hypothetical protein L916_11186 [Phytophthora parasitica] >gi|570947995|gb|ETP13252.1| hypothetical protein F441_11514 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 182.185 bits (461), Expect = 1.767e-46
Identity = 155/526 (29.47%), Postives = 246/526 (46.77%), Query Frame = 0
Query:  144 PQCLPPSDASLPHHAPSSHGHAAHVIMADLHATPPPQTSVPRDWGFLVLFLLQACFLITLALRLGLPSLGLWEHALVDDASRTAPLAHSPETVAVARNLLCLAAGLGLVANVLSFVWLGFMLNLSTALITSTVFLSIMSAGLLALLSLLSGHLIGCLLFASLAVAGLCLLREDPSRVLVSSSILGTACRAVAESRNLFGAAYLLVALHFLWVVIWAVAATGVYTT-VAAESHGNH----LQSGRQYGA---GQEALLG-FFLLFSLYWGASVCQNTLRCTVVGAVAAWWYVPGPARDSVSLALARATGPSLGSVCKGSLAVSLIETCRVGLRGLGGVGLG-GSERGPGCCPCCLCPGCCFCGCRWVCGCVLDYLLGCVEAAWRAFNRFAFVFVGVWGYPYSEAARLALRLFEARGWEVILNDYLIGNVLFLGCMLMGGGTAFLGVMTTRLLP-EAFEALPASATF---VALAGFLIGLGNCLLLVSVVSSAVDTVFVCFAASPHVLQTNRPAEYAHLRHVFDQWRE 655
            P  L PS        PSS        ++ +    P  T+   D  F V+FL     L  LA   G+P       AL +D  R       P+  +VA  ++ L   L +V  VLS  W+  +++ ++++I   ++L++      A+ S  S ++   L F  +A   +  +    +R+  +S+ L  AC  + +   +F  A++LV    +W+ +W VA+ G++   V A+ + +        GR +G    G  A    F++L S+YWG  V QN L CT  G VA WWY P   + +V  AL R+   S GS+C GSL V++++     LR +  +     SE   G   C  C   C   C      +++Y+           N +A+V+VGV+GYP+  + +  + LF  RGW  ++ND L  + L  G   +G  T  +G++  R  P E F AL +       +AL GF++GL   L+L  V+ +A+ T+FVCFA  P     N P EY  L      WR+
Sbjct:   10 PMLLSPSGGKERRSPPSS-------AVSSMRLEAP--TAKCNDAFFAVVFLANVLILGILAFWKGVP-------ALKEDMGRNRSDGRIPQGHSVAWTMIGL---LCVVGTVLSLAWIKLLMSYASSMIRVALWLNVGMVLAFAV-STFSVNVWAALFFLFMAAINVWYIYAVQNRIGFASANLKAACAGLKQHSAVFVVAFVLVLQQLVWMFLWGVASLGMHKLFVEADPNCDREIDLASRGRNHGGLCVGLPAYAALFYMLVSVYWGQQVLQNILTCTTAGVVATWWYQPNAQKATVG-ALYRSVTTSFGSICFGSLIVAVLQ----ALRTMADMAKRRASEENNGGLACLACMAECILSC---LANIVEYM-----------NHWAYVYVGVYGYPFRTSGKAVMDLFNNRGWTAVINDDLTSSALSFGAFGVGVVTCCVGLLMVRFSPVEWFTALGSRMGVYGTMALIGFMVGLSMALILAHVIIAALHTIFVCFAEDPVAFNRNHPKEYEEL---VAGWRQ 493          
The following BLAST results are available for this feature:
BLAST of EWM23647.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104800|gb|EWM23647.1|0.000e+0100.00Choline transporter [Nannochloropsis gaditana][more]
gi|553188664|ref|XP_005854837.1|0.000e+098.83hypothetical protein NGA_2014000 [Nannochloropsis ... [more]
gi|397606058|gb|EJK59191.1|1.240e-4932.82hypothetical protein THAOC_20618 [Thalassiosira oc... [more]
gi|695378527|ref|XP_009516302.1|4.935e-4828.65hypothetical protein PHYSODRAFT_552564 [Phytophtho... [more]
gi|224002216|ref|XP_002290780.1|1.113e-4731.53predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|953497552|emb|CEG41039.1|1.380e-4729.76hypothetical protein L915_11285 [Plasmopara halste... [more]
gi|301104838|ref|XP_002901503.1|1.842e-4728.98conserved hypothetical protein [Phytophthora infes... [more]
gi|325183217|emb|CCA17676.1|2.678e-4728.80conserved hypothetical protein [Albugo laibachii N... [more]
gi|813141736|ref|XP_012199058.1|9.960e-4726.81hypothetical protein SPRG_19805 [Saprolegnia paras... [more]
gi|567957919|gb|ETK83515.1|1.767e-4629.47hypothetical protein L915_11285 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7037rna7037Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications