rna7036, rna7036 (mRNA) Nannochloropsis gaditana

Overview
Namerna7036
Unique Namerna7036
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length330
Alignment locationCM002470.1:294994..296190 +

Link to JBrowse

Properties
Property NameValue
Producttransmembrane protein 19
Orig transcript idgnl|cribi|Naga_100191g10.7768.mrna
Orig protein idgnl|cribi|Naga_100191g10.7768
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:294994..296190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100191g10gene6802Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7036rna7036-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23658.1cds7019Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7036 ID=rna7036|Name=rna7036|organism=Nannochloropsis gaditana|type=mRNA|length=330bp
ATGGAGGTCGACAACCCGATAGTTGAAGAAAAAAGCCTTTATCAAGAGAA
AGGCGGAGCGCTCAAGATATCTGACTACGTAGTAAGGGAAAACCTACTTA
GAAAGCAGAGCAATTGCCTCAAAAGGACAATTGAAGCAGTAGATGGCGAT
GCAAGTCTTTATCTTTCGACGCATGAGAAATTGAATGTGGTCGCAAAGGT
GAGGTTCGTGGCATGCATGTTGGTGGGATTTTCACGAGCCTTACCCAAGT
GTTTATGTGGCCCACACGAGAGCCGATACCATACTCTAAAGGCGTCAGGT
GCAAAACCATATGATGAGTTACATTTGTGA
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protein sequence of rna7036

>rna7036-protein ID=rna7036-protein|Name=rna7036|organism=Nannochloropsis gaditana|type=polypeptide|length=398bp
MRSGVPGPRRRLSYARQTVTAPGFQALRVYVAGKALRNKISDRSDRGASG
FEEMLSFDFVEVFAQTAQLFHIHTQRENMSLPDKLPPLPVSEASRPPSKF
LINLVMATIFATTLSYRGLWKHSLSKSGALAAWVVGFLSMGASLRFGALM
ILFYQSSSMLTRYRCETKALLEEDHKQGGQRSAAQVLACSFLGTLIAVAF
VFLLGPDDLPLNFEASPLRSRLLCAYVGHYACCNGDTWASEIGILSPSSP
RLVTAGFRRVVPRGTNGGMSLTGTLASIAGGALIGTGHSILGFVLGMPDD
ASGAGWCPGWFFMTVIGAACGFIGSLSDSILGGLFQATWYCAEKKRVVKH
PTAQERQGRGAEQVRLISGLDLLSNEHVNLISIALSTALAPVLGRLLW
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mRNA from alignment at CM002470.1:294994..296190+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7036 ID=rna7036|Name=rna7036|organism=Nannochloropsis gaditana|type=mRNA|length=1197bp|location=Sequence derived from alignment at CM002470.1:294994..296190+ (Nannochloropsis gaditana)
ATGCGGAGTGGAGTCCCTGGACCCCGCAGGAGGTTATCGTATGCTCGACA
AACGGTCACAGCCCCGGGCTTCCAAGCACTGAGGGTGTACGTTGCCGGAA
AGGCATTACGTAACAAGATCAGTGATAGAAGTGATAGAGGTGCATCGGGT
TTCGAAGAGATGCTGTCTTTTGATTTTGTAGAGGTTTTCGCTCAAACTGC
CCAGCTCTTCCATATACATACCCAAAGGGAAAACATGTCTCTTCCGGATA
AATTGCCACCTCTACCCGTCTCGGAGGCGTCAAGACCACCATCAAAATTT
CTCATTAATCTGGTTATGGCAACCATATTTGCTACAACTTTGTCGTATCG
AGGTCTGTGGAAGCACTCCCTTTCCAAGAGTGGCGCATTGGCTGCTTGGG
TGGTTGGCTTTTTAAGCATGGGGGCATCTCTCCGGTTCGGTGCTCTGATG
ATTCTATTTTACCAAAGCAGCTCAATGCTCACCAGGTATCGATGTGAAAC
GAAGGCACTTTTGGAAGAAGATCACAAGCAAGGGGGCCAACGTTCTGCAG
CCCAAGTCCTTGCCTGCTCTTTTTTGGGCACCCTGATCGCGGttgccttc
gtcttcctcctcggccccGACGACCTCCCCTTAAATTTTGAAGCGAGCCC
ATTGCGTAGTCGACTTCTCTGTGCGTACGTGGGTCACTATGCATGTTGCA
ACGGGGACACGTGGGCGTCCGAAATTGGCATATTGAGTCCTTCATCCCCG
CGCTTGGTCACGGCCGGCTTTCGACGGGTCGTGCCCAGGGGTACGAACGG
TGGTATGTCCTTGACGGGCACCTTGGCATCTATCGCTGGAGGTGCACTGA
TTGGGACCGGTCACAGCATCCTCGGTTTTGTCCTTGGAATGCCAGATGAC
GCCTCCGGGGCTGGATGGTGCCCAGGCTGGTTCTTCATGACTGTGATCGG
GGCCGCATGTGGTTTCATCGGCTCTTTGTCCGACTCGATCCTGGGTGGAC
TTTTCCAAGCGACCTGGTACTGcgcggaaaagaagagggtggtgAAGCAT
CCGACAGCTCAGGagcggcaagggcggggcgcGGAGCAGGTGCGCTTAAT
CAGCGGCCTGGATCTGTTGAGCAACGAGCATGTAAACCTGATATCCATCG
CGCTTTCCACGGCTCTCGCCCCTGTTTTGGGGCGTTTGCTCTGGTGA
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Coding sequence (CDS) from alignment at CM002470.1:294994..296190+

>rna7036 ID=rna7036|Name=rna7036|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at CM002470.1:294994..296190+ (Nannochloropsis gaditana)
ATGCGGAGTGGAGTCCCTGGACCCCGCAGGAGGTTATCGTATGCTCGACA
AACGGTCACAGCCCCGGGCTTCCAAGCACTGAGGGTGTACGTTGCCGGAA
AGGCATTACGTAACAAGATCAGTGATAGAAGTGATAGAGGTGCATCGGGT
TTCGAAGAGATGCTGTCTTTTGATTTTGTAGAGGTTTTCGCTCAAACTGC
CCAGCTCTTCCATATACATACCCAAAGGGAAAACATGTCTCTTCCGGATA
AATTGCCACCTCTACCCGTCTCGGAGGCGTCAAGACCACCATCAAAATTT
CTCATTAATCTGGTTATGGCAACCATATTTGCTACAACTTTGTCGTATCG
AGGTCTGTGGAAGCACTCCCTTTCCAAGAGTGGCGCATTGGCTGCTTGGG
TGGTTGGCTTTTTAAGCATGGGGGCATCTCTCCGGTTCGGTGCTCTGATG
ATTCTATTTTACCAAAGCAGCTCAATGCTCACCAGGTATCGATGTGAAAC
GAAGGCACTTTTGGAAGAAGATCACAAGCAAGGGGGCCAACGTTCTGCAG
CCCAAGTCCTTGCCTGCTCTTTTTTGGGCACCCTGATCGCGGttgccttc
gtcttcctcctcggccccGACGACCTCCCCTTAAATTTTGAAGCGAGCCC
ATTGCGTAGTCGACTTCTCTGTGCGTACGTGGGTCACTATGCATGTTGCA
ACGGGGACACGTGGGCGTCCGAAATTGGCATATTGAGTCCTTCATCCCCG
CGCTTGGTCACGGCCGGCTTTCGACGGGTCGTGCCCAGGGGTACGAACGG
TGGTATGTCCTTGACGGGCACCTTGGCATCTATCGCTGGAGGTGCACTGA
TTGGGACCGGTCACAGCATCCTCGGTTTTGTCCTTGGAATGCCAGATGAC
GCCTCCGGGGCTGGATGGTGCCCAGGCTGGTTCTTCATGACTGTGATCGG
GGCCGCATGTGGTTTCATCGGCTCTTTGTCCGACTCGATCCTGGGTGGAC
TTTTCCAAGCGACCTGGTACTGcgcggaaaagaagagggtggtgAAGCAT
CCGACAGCTCAGGagcggcaagggcggggcgcGGAGCAGGTGCGCTTAAT
CAGCGGCCTGGATCTGTTGAGCAACGAGCATGTAAACCTGATATCCATCG
CGCTTTCCACGGCTCTCGCCCCTGTTTTGGGGCGTTTGCTCTGGTGA
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Synonyms
Publications