rna7031, rna7031 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7031
Unique Name	rna7031
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1965
Alignment location	CM002470.1:286115..289240 -

Link to JBrowse

Properties


Property Name	Value
Product	A1 cistron-splicing factor, AAR2
Orig transcript id	gnl\|cribi\|Naga_100191g15.7760.mrna
Orig protein id	gnl\|cribi\|Naga_100191g15.7760
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:286115..289240 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100191g15	gene6797	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23650.1	cds7014	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7031	rna7031-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:286115..289240-
coding sequence from alignment at CM002470.1:286115..289240-

mRNA sequence

>rna7031 ID=rna7031|Name=rna7031|organism=Nannochloropsis gaditana|type=mRNA|length=1965bp
CCTTTGTTCTCACTGATTGTCTGCACTCTGATATCAAGTCACGGCTGACA
TACCTTTCCCGCAATTTCTAACCGTTGGGCGCGGCATTCGTGAATCCGTG
TGCACGATCACGCAGTGTTTTGCACTTGGACTTGGTATTTCTCCTTACTG
CGTAAGCCACCTTCCTCAGCAGGCTCCTCCATCGATTGACCTCAAGTCGG
AGGAGCATCTATGTGGAAATGAATGCAAAACTGACCCTTCCTCCACGCTT
TATACAGTATATAACTTCAAACTGGTTGGTTGCGCTTGGCTTTGGTAGGT
AGCGTCAGGCCGAACACAGTCAAGGAATATACTTTCACCATTTACCTCCT
CGCCCCTCTAGCGGACCCCAACGAGTTTGCGTTTTAATCCATGGATAACA
AGGAAAACGCAGTCAACGAAGTAACAATGGGTGACGCACATGGGCCTTCA
AAAGCAACCAAGGAGACTGCCACAGCCCTCAAAGAGGAAGGGAACCGAGC
GCTACATGATAACCATTTCGAGCAAGCTACGGAGTATTACACTCAAGCCC
TGGCTCTGCATCCCACCGCCGTCCTGTATTCAAATAGGGCCATGGCGGCC
ATCAAGATGGAGAACTACGGGATCGCCATCCAGGACGCGGAGGAGGCCAT
CGCCCTGGACCCCGGGTACCTGAAAGCCTTCTACCGGAGAGGAAGTGCCA
AGTACGCACTTGGAAAGTACAAAGAGGCCCTCAGAGACTTCAAGCATGTT
GTGAAGGTCCACCCCCGCGACCGGGACGCGGTGGCTAAGCTGCGGGAGTG
CGAGAAGTGCGTGAAAATCGCGGCCTTCGCGGCCGCCATACAGACAGAGG
ACTCGATGCCTTTGTCGCAGACAATCAATGTGGATGCCATCGTGGTGGAG
GACAGCTATGACGGGCCGCGCCTGGGGCCCGAGGGGGGAGAGGAGGGAAT
GGCAGAGGGCGAGCTAGGTGTGACCCCCTCTTTTTTGGAGGATTTGACAG
AGAGGTTCAAGGCTCAAAAGCTCCTGCACACCAAGTACGTGATCCGAATC
CTCTTGGCGGCCCTGCGCCTCTTTCAAGCGCTCCCCAACGTGATGGAGCT
TCGGACCCGCGATATCCCGCGCACCCCCGACGCGGAGGCCGGGCGGGAGG
AGGGGAACGTCATCACTGTCTGCGGCGACACGCACGGACAGTTCTTCGAC
GTGTTGCGCATATTCGAAATGAACGGAAAGCCCTCGCCGACCAACCCGTA
CCTGTTCAACGGGGACTTTGTGGACCGCGGCTCTTTCTCCTTCGAGGTGA
TTACCCTCCTCCTGGCCTACAAGGTGGCCTACCCGAGCTCTATGCACCTG
GTGCGCGGCAACCACGAGAGCAAGAGCATGAACCGCATATACGGTTTCGA
GGGGGAGATCAAGCACAAGTACGATGAGGCGATGATGGGCCTCTTCACCG
AGGTGTTCTGCGCCATGCCCCTATGCGCGACCATTGACGCGTCCGTTTTC
ATAGTCCATGGGGGCTTGGCCGCCCAGGACGGCGTCACGCTCGCGGACAT
CAACAAGATCTACAGGTTCCGCGAGCCGCCAGAAAGCGGGCTGATGAGCG
ACTTACTCTGGTCTGACCCGCAGCCCATGCCGGGCCGCCTGCCGTCCAAG
CGGGGAGTGGGCTTGTCCTTCGGGCCCGACGTCACCAACCGGTTCCTGGA
GACGAACGGGCTGAAGATGGTGGTGCGCTCGCACGAGGTCAAGGAGGAGG
GGTACCAGGTCGAGCACGACGGCAAGTGCGTGACAGTCTTCTCGGCGCCC
AACTATTGCGACCAGATGGGGAACAAGGGGGCGTTCATTCGCTTCGGCCC
GGATCTGGTCCCGCGCTACACGCAGTTCCAGGCGGCGCCACATCCACCCA
TCCGGCCCATGGCCTACGCGAGCAACATGATGGGCTTGTAGGGTCGGGAG
GGCGAGGGGGGGGAG

protein sequence of rna7031

>rna7031-protein ID=rna7031-protein|Name=rna7031|organism=Nannochloropsis gaditana|type=polypeptide|length=470bp
MRLPDRPHQDGGIVIILGMPPGFEFGIDMQINQVGPNFRGVAGVPIGIHL
LTFGTGKGLRQGFFINITRPYEVIVKSWNALDEELIEEGTGLPEGSMRSL
LDALKRGELNKHLGAYPDSAQGGLWRQLTKYVTADVLSMCGLALETRILP
GDWEEENVRSRGAGEEAGEVVSLCPGGGRAAVFTDMGVRGRLRDKKDMTP
PALTRYHMDRSELLDDMLRDVYSKMPGSSSTAATAAKKPSPSSLPFPPSS
SSPSAWMNLLGEHQLAFLLFLNLFSMAGLRHWKESTALLCQVSSALPRHL
PLYRAFLKLLRVQLQTAPSDFFVNEDEVGKGSFLGPSLQSLIRNVREARE
DGGGDDILRCARTFAAAMEKDFPGLELERQLDVTGGDIGGGLTEGEEEEE
GPQVLPWEEYERVMRGPTAEEEECGASGQVDERRLREQERPVGPLETLGE
EEAGSGVSGDEAGTGGREGS

mRNA from alignment at CM002470.1:286115..289240-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7031 ID=rna7031|Name=rna7031|organism=Nannochloropsis gaditana|type=mRNA|length=3126bp|location=Sequence derived from alignment at CM002470.1:286115..289240- (Nannochloropsis gaditana)
CAATCACACAGGCGCATGATGGCTTGTGGATAATTGCTACATTCCTGGAG
AGGAGAATTTCAGCAACGGCTTGTCTTCCCGAGCTCTTACAGTTCTATCA
TGAGACTCCCGGACCGTCCGCATCAAGACGGAGGCATTGTTATTATTTTA
GGCATGCCGCCGGGATTTGAGTTTGGCATAGACATGCAGATAAATCAAGT
CGGGCCGAATTTTAGAGGTGTTGCCGGCGTGCCGATTGGCATCCATTTGT
TGACTTTTGGCACCGGCAAGGGCTTACGCCAAGGGTTTTTCATCAATATC
ACTCGGCCGTACGAGGTTATCGTGAAATCATGGAATGCATTGGATGAGGA
GCTGATTGAGGAGGGCACAGGTCTCCCTGAGGGTTCTATGCGGAGTCTCT
TGGACGCCCTGAAGCGTGGGGAGCTGAACAAGCACCTAGGAGCGTATCCA
GACAGTGCCCAGGGAGGACTCTGGCGGCAACTGACAAAGTATGTGACAGC
TGACGTTTTGAGCATGTGCGGCTTGGCTCTTGAGACGCGTATTCTACCTG
GCGATTGGGAAGAAGAAAACGTGCGTTCTCGAGGCGCGGGGGAGGAGGCG
GGAGAGGTGGTATCCCTCTGTCCCGGGGGGGGGCGTGCGGCTGTCTTCAC
TGACATGGGGGTGAGAGGCCGCCTCCGGGACAAGAAAGACATGACGCCTC
CTGCCTTGACGCGCTACCACATGGACCGCTCGGAATTGCTGGACGACATG
CTACGAGACGTTTATAGCAAGATGCCTGGGTCCTCGTCCACGGCCGCGAC
GGCAGCAAAGAAGCCCTCCCCCTCGTCCTTGCCCTTCCCCCCCTCCTCCT
CATCCCCGTCCGCCTGGATGAATCTCCTCGGGGAGCATCAGCTTGCTTTC
CTCCTCTTCCTCAACCTCTTTTCCATGGCGGGACTTAGGCACTGGAAGGA
AAGCACGGCCCTCCTGTGTCAGGTCTCCTCCGCCCTTCCTCGCCACCTCC
CCCTCTATCGCGCCTTCCTTAAGCTCCTTCGCGTTCAGCTCCAGACCGCG
CCCTCCGATTTCTTCGTGAACGAGGACGAAGTCGGCAAGGGCAGCTTCCT
GGGCCCCTCCCTCCAGAGCCTGATCCGCAACGTGAGGGAGGCTCGAGAGG
ACGGCGGCGGAGACGACATCCTCCGATGCGCGCGGACGTTCGCAGCTGCG
ATGGAGAAGGATTTCCCGGGCCTGGAGCTGGAGAGGCAACTGGATGTGAC
AGGAGGAGATATAGGCGGGGGGTTGACAGAGGGAGAGGAGGAGGAGGAGG
GCCCGCAGGTGCTGCCGTGGGAGGAGTATGAGCGGGTCATGCGGGGGCCG
ACGGCGGAGGAAGAGGAGTGTGGAGCCTCGGGGCAAGTAGATGAAAGGAG
GCTAAGGGAGCAGGAGAGGCCTGTGGGGCCGCTTGAGACGTTGGGAGAGG
AGGAAGCGGGGAGCGGAGTAAGTGGTGACGAGGCTGGGACGGGCGGTCGG
GAGGGGTCGTGAGAGGAGCGGGCGAGCAAGCCTAGTCGCGCGAGGGAGAC
GGAGAAAGTCGGAGGGGGATCAGACGAGGTCCTCGAAGGAGGAGGCCGTT
TGTGGGAGGGTGGTGGGGCGGGGCCTGCGCCTGGTCACGACTAAAGGAGC
AAGGCCGTGGGGTTTATGACAGAGGTTGTGGAGTGGGGGGGAGGGCATTC
ACAGGGAGATCGGCGGCAGGAGGCAAAGGGGGAAATGGGAGGTGCGTGCA
GTGGAGAGGGAAAGCTGTTCAAAGGAAGTAAAATAGGGGCATTAGATTCG
CGCACGGTGACAAACAGGCAGCGACGCGAAGGGCGACATCGCCTGGAATG
GGAGGGGGGGAGGCGCAGCAGTATGGCTTTAGAAAAGAAGCTCCGCCAGA
GGAGAGATTGTCTCGTTGTTTTTCACCAGTGCGTGGCATTAGTTCTACGG
TGTGCCCTCCCGGCCGGCCCTCGGGCACACGCAGCCTCTCCCTCTCTCCC
TCCGGCGTGGCGCCCATTTTAGAGCGCGCGCAAGGTATCGCTTCATCAAC
CCTCGATCGGATGCATTATCTACGGCATCCAACTCTTTCCCCGCCCTCGA
CCCATCCTTAGAGCTTCTGACCCTTGCGCAGGGAGAGGCGAAGCATGCGG
GCCTTCCTGCGCGCCTGTACGGCCTTGCGCTTGGCTTTCTCTTGATTCGT
TTCGTGGTATCGGTGGAAACGCAGGTCGAGGAGGTGCCCCGACTTGTTCA
CTTCGCGCTTGAAGCGCTTGACCGCGTTGTCAATGCTGTAGAAGGAGGGG
AATGGAAACCCACTGGATCAGTCAATGATCGGCCGTTCGGTGGTGGGCCG
TGAATAGTCCACGACTAGGAAACGGGATACGCAATTCAGGGCATCTTTGT
TATCTTTGCACCGGGCTTTCCTCCTCAAATCTATCGGCCATTACATCACA
CTTACTTCTCGCCGTCCCCCACAGAAACCATCACATCTGTTGACACCGGT
ACGCGCAGGCCTGAGGGGGAAGAGCGTGCATGATACATGTGAGAGAAGAG
ATTGAGTGAAAATAAGAATGCGTGGCAGATGCCAACTTGCGATTAAGGCC
ACGCTTCATCTTTGTCACCACACGCAATGTCTCGATCCGCTCCTCGATAT
AATAAGCTTCACCACCCATGGGAGGGGCCCGGCTGAAATGAATATCTCAC
ACGTACCGGTTTCAGATTGAGCGGGCTGATAGACGCGGGCAGCGGCAGAG
GAGCTGATTTTGACCATAGGCAAGGATGGCATGAAGGCCTGGGAGCCGAC
AGCGAGGGTGCCCACTGCCAGACATACCAGTTTCTTGAACATGGTAGTTT
CTATGTGTGTTTATATACATGCGACGCGTCGTGAAATTCCGGAGCTTGAG
TGCATAGAGGGACAACTGAGGGAGTCCGGATACGAAAGCAGAGTGTCGTT
TTCATCGTGGGGTGGACTGTAAGGCCCCCACCCCTTGTCAACAACACGCG
ACCAGCATATGACTTCTGCTAAGATTCCACAAACTTGCACGCTGTCCATT
GCACGAGACGATGACACTATTGAGAGCCTTGTCCACTCATGCAAGGGAAA
AACAGAGTGGCTCGATCCCGACTCCC

Coding sequence (CDS) from alignment at CM002470.1:286115..289240-

>rna7031 ID=rna7031|Name=rna7031|organism=Nannochloropsis gaditana|type=CDS|length=1413bp|location=Sequence derived from alignment at CM002470.1:286115..289240- (Nannochloropsis gaditana)
ATGAGACTCCCGGACCGTCCGCATCAAGACGGAGGCATTGTTATTATTTT
AGGCATGCCGCCGGGATTTGAGTTTGGCATAGACATGCAGATAAATCAAG
TCGGGCCGAATTTTAGAGGTGTTGCCGGCGTGCCGATTGGCATCCATTTG
TTGACTTTTGGCACCGGCAAGGGCTTACGCCAAGGGTTTTTCATCAATAT
CACTCGGCCGTACGAGGTTATCGTGAAATCATGGAATGCATTGGATGAGG
AGCTGATTGAGGAGGGCACAGGTCTCCCTGAGGGTTCTATGCGGAGTCTC
TTGGACGCCCTGAAGCGTGGGGAGCTGAACAAGCACCTAGGAGCGTATCC
AGACAGTGCCCAGGGAGGACTCTGGCGGCAACTGACAAAGTATGTGACAG
CTGACGTTTTGAGCATGTGCGGCTTGGCTCTTGAGACGCGTATTCTACCT
GGCGATTGGGAAGAAGAAAACGTGCGTTCTCGAGGCGCGGGGGAGGAGGC
GGGAGAGGTGGTATCCCTCTGTCCCGGGGGGGGGCGTGCGGCTGTCTTCA
CTGACATGGGGGTGAGAGGCCGCCTCCGGGACAAGAAAGACATGACGCCT
CCTGCCTTGACGCGCTACCACATGGACCGCTCGGAATTGCTGGACGACAT
GCTACGAGACGTTTATAGCAAGATGCCTGGGTCCTCGTCCACGGCCGCGA
CGGCAGCAAAGAAGCCCTCCCCCTCGTCCTTGCCCTTCCCCCCCTCCTCC
TCATCCCCGTCCGCCTGGATGAATCTCCTCGGGGAGCATCAGCTTGCTTT
CCTCCTCTTCCTCAACCTCTTTTCCATGGCGGGACTTAGGCACTGGAAGG
AAAGCACGGCCCTCCTGTGTCAGGTCTCCTCCGCCCTTCCTCGCCACCTC
CCCCTCTATCGCGCCTTCCTTAAGCTCCTTCGCGTTCAGCTCCAGACCGC
GCCCTCCGATTTCTTCGTGAACGAGGACGAAGTCGGCAAGGGCAGCTTCC
TGGGCCCCTCCCTCCAGAGCCTGATCCGCAACGTGAGGGAGGCTCGAGAG
GACGGCGGCGGAGACGACATCCTCCGATGCGCGCGGACGTTCGCAGCTGC
GATGGAGAAGGATTTCCCGGGCCTGGAGCTGGAGAGGCAACTGGATGTGA
CAGGAGGAGATATAGGCGGGGGGTTGACAGAGGGAGAGGAGGAGGAGGAG
GGCCCGCAGGTGCTGCCGTGGGAGGAGTATGAGCGGGTCATGCGGGGGCC
GACGGCGGAGGAAGAGGAGTGTGGAGCCTCGGGGCAAGTAGATGAAAGGA
GGCTAAGGGAGCAGGAGAGGCCTGTGGGGCCGCTTGAGACGTTGGGAGAG
GAGGAAGCGGGGAGCGGAGTAAGTGGTGACGAGGCTGGGACGGGCGGTCG
GGAGGGGTCGTGA

Synonyms

Publications