rna7025, rna7025 (mRNA) Nannochloropsis gaditana

Overview
Namerna7025
Unique Namerna7025
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2394
Alignment locationCM002470.1:275976..277421 -

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Properties
Property NameValue
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100030g49.4193.mrna
Orig protein idgnl|cribi|Naga_100030g49.4193
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:275976..277421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g49gene6791Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23696.1cds7008Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7025rna7025-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7025 ID=rna7025|Name=rna7025|organism=Nannochloropsis gaditana|type=mRNA|length=2394bp
CTTGCATTCTATTACGGACCTTTCAGCCCTAGGCCGATGAGATAAAGCAT
ATGGTCGAATCTCTCACTGCAAAAATGTCGTCCTGGTCTGTTCCATCGAC
TTACGATGAAAAATCGCTGACCGGCATGGGCCTTCTCTTTCATGTCAAAA
CACCCCCACGCTTACATCGCGTCCATCATATCTGCTAGAGAACCACGCTC
CCATAGTAGAACGCACCCGGTACCCGGTGGTATGCCTGCATCAGCTGCCG
GCGTTACCCTTACATCGGGCGGAAATTCTGTTGTCCCTCGCCGCTATATT
TTGTCGGAACAAGACGAGGCCCATGTAAATAATAGTAAGTTCGAGGCGGC
TGCAGACTTCCAAGGTCCCGTCAAGAAGCGTACATGTACGGATCCCTGCT
TTCTCATTTTATTGCTCGGGGCTTGGGCAGTCATGTCATGGATCGGACGG
GAGGCCATGTTGAATGGGCATGTTGAGGTCTTGACAAACGGATACGATTG
GAATGGCACTGTGTGCCAAGGTTCCACTCCCTTTTTCATGCCTCTGAACA
TCAAAACTATGGGCGTTTGCCTTGAGGAATGTCCCGAAATCTATGATCCG
GCTGTCGTCTTCTGCATCGGGGAGGTGGCCCCCACGGAGGACAACATCCA
GAAAGGCTACTGTATTCCTCAGTACCCGACCAAAGAGATCATGAATCGGT
GCTACATTACCAACAGCACGGCATTGGAGGCCTTCAGCATGGCTAAATCA
TACAGGGACGATCTGGATGTATCAGTTTTGACGGAGTTCTACGGAGACGT
GATAAATGCTCGGACCTTCATTTTCGGAATCGGCTTCGGCGCCGCACTGA
TCTTGGGATTCTTGTGGACATGGCTTTTACGTACCCCTGGTCTCATTTAT
GTGGCTGTTTGGACAGTCAATATGCTTGTGTGGGCGTGCTTGGGCGCCCT
AGGCGCGTTCATGTATCTGTGGGCGAATGACTGGAAGAATGATGTTCCCC
GGACGCATTCGGACCGCGAGGTTTGGGTGGCGAAAGGCCTCGGCATCTTT
TTCTTGGTAATGTGCGCCTTGTGGCTTTGCACGCTTGTCTTTTTGCGAAA
GCGGATCAACTTGGCAGTCGGATTAGTTAGGGAGGCGGCCCGGGCGGTGA
TCGACATGCCCCTGATTGTCCTGTACCCCTTTCTCCAAGCCGCCGGCCTT
GTGCTTTTTCTCGTGCCTTGGTCTTTTTACTCCGTCAACATTGCCTCCAT
GGGCCACTTCGAGCCTCGCCTTTTCCAAGGCACCGGCGTCAATCCATTTG
CGGAGGCTGGCCCCGAAGTAATCGTCCAGCGCTTTCAGTACGGCGCAAGC
GGCTCGGACTTCGCCTGGTACATGCTTTTTGTTCTTCTCTGGACCGCCCA
ATTCATAATCGCAGTCGGGCAAATTACCCTCGCTTTGGCCGTATCCACTT
GGTATTTCACGCGAGACAAGGGTACGATTGGAAGTGGTACTCTATGTAAG
GCTGTGGGCATCACGGGGCTCTATCATCTCGGGACAGCCGCATTCGGTTC
TTTGGTCATCGCTGTTGTCGAAGCAATCCGATCAATTATCGCCTACATAC
AAAAGATACTCAAGCGTTCAGAGAATAAGGTCGCACAGTACCTTCTCTGT
TGTTGTCAGTGTGGCTTTTGGTGTCTGGAAAAGATTTTGAAATTTGTTAA
CAAAAACGCCTACATTCAAACCGCTGTGAATGGGACCTCTTTCTGCACCT
CTGGGAAGATGGCATTTTTCCTCATCGCCCGCAATATCATGCGAATCGGA
GCGGTATCCCTTGTAAGCGAATTCGTCATAATAATCGGGAAGGTTTTTGT
CTCTGTTACTGCCGGCGCTATCTCTTTCTATACCATGACTTTCTTTTTGG
AAGACAGGATTCACTCGCCTATCGGTCCTACCATCCTAGTTGTAATATTG
GCGTGGTTTACTGCCGACATGTTCTGTCAGATTTTTTCGATGGCAGTTTC
TGCCTTGCTCCAAGCATTTATCGCAGACGAAGAAATGTTCGGCCCTGGTG
AGCGTTATGCCAGCACGGCGCTTGCTGTCTACATAGATGAAAATGGTGGC
AGCAGCGATGGTGGAAATCGAAAACAAAATGGAAATGCGCATCGCACACA
TTACGATGACGACGATGGTACAACAGGCAAAATTAAAAGCGTAAAGGACA
AAGCTGAAGAAGCTGAAATATTCGCTAAAGTCGCTTGTTAGATCAGTCTC
AAAGAAATAAATGTAATCATGTATTAAGTGTAATATCACTCACGGCGCGC
CTTTCATGTCGTCGTTCTTCCACCGCACATTCAAAGCACACAATATGAAA
GAGAATGGCGTGATGTTTTGGTATTGTAAGTAATGACAACTTTC
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protein sequence of rna7025

>rna7025-protein ID=rna7025-protein|Name=rna7025|organism=Nannochloropsis gaditana|type=polypeptide|length=466bp
MIVIANKTEAQRILSLLEDALNSLNLLAGIPLRLSQDPNLHFSPDVSNIL
SEQQDMEENVMKSFLMPPFPYSPALPIPESSPLFPPPETELSAYQSQSSN
LFPSRCSPHSSGNSSRDTMLKNHLSITRHLVRTMRRFHPKIDACASPTFS
LFIGALCDLRNILTQRFSTTLQDDLRRVNTLGKLTDKEKHTFDSLALLQH
VSTTKEREQSEEITTLEGLREKLETELAVQEAQSKEERDNIAQELKNSLD
LAHTRHAAKITELRKCLEDLVPILAQEAKKYEFTEQLMKEKQTLLEEKLA
DVMQNYEADVKQKQDDLRWLRATAREEKNELHALREHFAVVERQQAELNN
MERERQERALEAEARMRHAVECAIRIQSVFRKHKAVMGYQALKKSGKLAG
GDKKAKKKKPGVKAGTKGFVKKANISKAAVSNVSKNESATPVRTLRKAAH
GSKKEGAGRKIIKKTK
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mRNA from alignment at CM002470.1:275976..277421-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7025 ID=rna7025|Name=rna7025|organism=Nannochloropsis gaditana|type=mRNA|length=1446bp|location=Sequence derived from alignment at CM002470.1:275976..277421- (Nannochloropsis gaditana)
CTCTGAGGTCAATTTTCTTGCAGAGATCACAGCAGCAATGATTGTCATAG
CCAATAAGACGGAAGCTCAGCGGATACTGTCATTGCTGGAAGATGCGCTA
AATTCTCTAAATTTGTTAGCCGGAATCCCTCTACGTCTGTCGCAAGACCC
AAACCTACACTTCTCCCCAGATGTTTCGAATATTTTGAGCGAACAGCAGG
ATATGGAAGAAAACGTGATGAAGTCGTTTTTAATGCCGCCATTCCCATAT
TCGCCTGCATTGCCGATCCCTGAATCATCTCCTCTTTTTCCACCGCCAGA
AACCGAGTTATCTGCATACCAAAGTCAATCCTCGAACCTATTTCCTTCCA
GGTGTTCCCCCCATTCGTCAGGAAATTCCTCACGTGATACAATGTTGAAA
AACCATCTATCTATTACCCGTCACCTGGTCCGCACAATGCGCCGCTTCCA
TCCTAAAATTGATGCATGTGCTTCGCCTACATTCTCTTTATTCATTGGTG
CCCTTTGCGACCTTAGAAATATTTTGACTCAACGCTTCTCCACTACCTTA
CAAGATGACCTTCGAAGGGTGAATACCCTAGGAAAATTAACGGATAAAGA
GAAACACACGTTTGATAGCCTTGCTTTGCTTCAGCATGTGTCTACCACCA
AAGAGCGCGAACAATCGGAAGAGATTACAACCCTTGAAGGCTTGCGCGAA
AAGCTAGAAACTGAACTAGCTGTACAGGAAGCCCAAAGTAAGGAAGAGAG
GGATAACATTGCCCAGGAACTGAAAAATTCGCTTGACCTCGCCCACACAA
GGCATGCAGCGAAAATTACAGAGCTCAGAAAGTGCCTAGAAGACTTAGTC
CCGATCCTGGCTCAGGAGGCTAAAAAATACGAGTTCACAGAGCAATTGAT
GAAGGAAAAGCAGACACTTCTCGAAGAAAAATTGGCTGATGTAATGCAGA
ATTACGAGGCGGACGTAAAACAAAAGCAGGATGATCTTCGTTGGTTGAGG
GCTACAGCGCGGGAGGAAAAAAATGAATTGCACGCGCTGCGGGAACATTT
TGCGGTGGTAGAGCGCCAGCAAGCTGAACTCAATAACATGGAGCGAGAGC
GGCAAGAACGTGCTTTAGAAGCGGAAGCTCGTATGCGTCATGCTGTTGAG
TGTGCTATTCGGATTCAGTCCGTGTTCCGGAAGCACAAGGCTGTAATGGG
ATATCAAGCGCTCAAGAAATCAGGTAAGCTGGCGGGGGGGGACAAAAAAG
CCAAGAAAAAGAAACCGGGGGTAAAAGCAGGTACTAAGGGCTTTGTCAAG
AAAGCAAACATATCAAAAGCCGCAGTCAGTAACGTATCGAAGAATGAGTC
GGCCACGCCCGTCAGGACACTCAGGAAGGCAGCACATGGCTCAAAAAAAG
AGGGCGCTGGCAGGAAGATAATAAAGAAGACAAAATAGTCCATCCC
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Coding sequence (CDS) from alignment at CM002470.1:275976..277421-

>rna7025 ID=rna7025|Name=rna7025|organism=Nannochloropsis gaditana|type=CDS|length=1401bp|location=Sequence derived from alignment at CM002470.1:275976..277421- (Nannochloropsis gaditana)
ATGATTGTCATAGCCAATAAGACGGAAGCTCAGCGGATACTGTCATTGCT
GGAAGATGCGCTAAATTCTCTAAATTTGTTAGCCGGAATCCCTCTACGTC
TGTCGCAAGACCCAAACCTACACTTCTCCCCAGATGTTTCGAATATTTTG
AGCGAACAGCAGGATATGGAAGAAAACGTGATGAAGTCGTTTTTAATGCC
GCCATTCCCATATTCGCCTGCATTGCCGATCCCTGAATCATCTCCTCTTT
TTCCACCGCCAGAAACCGAGTTATCTGCATACCAAAGTCAATCCTCGAAC
CTATTTCCTTCCAGGTGTTCCCCCCATTCGTCAGGAAATTCCTCACGTGA
TACAATGTTGAAAAACCATCTATCTATTACCCGTCACCTGGTCCGCACAA
TGCGCCGCTTCCATCCTAAAATTGATGCATGTGCTTCGCCTACATTCTCT
TTATTCATTGGTGCCCTTTGCGACCTTAGAAATATTTTGACTCAACGCTT
CTCCACTACCTTACAAGATGACCTTCGAAGGGTGAATACCCTAGGAAAAT
TAACGGATAAAGAGAAACACACGTTTGATAGCCTTGCTTTGCTTCAGCAT
GTGTCTACCACCAAAGAGCGCGAACAATCGGAAGAGATTACAACCCTTGA
AGGCTTGCGCGAAAAGCTAGAAACTGAACTAGCTGTACAGGAAGCCCAAA
GTAAGGAAGAGAGGGATAACATTGCCCAGGAACTGAAAAATTCGCTTGAC
CTCGCCCACACAAGGCATGCAGCGAAAATTACAGAGCTCAGAAAGTGCCT
AGAAGACTTAGTCCCGATCCTGGCTCAGGAGGCTAAAAAATACGAGTTCA
CAGAGCAATTGATGAAGGAAAAGCAGACACTTCTCGAAGAAAAATTGGCT
GATGTAATGCAGAATTACGAGGCGGACGTAAAACAAAAGCAGGATGATCT
TCGTTGGTTGAGGGCTACAGCGCGGGAGGAAAAAAATGAATTGCACGCGC
TGCGGGAACATTTTGCGGTGGTAGAGCGCCAGCAAGCTGAACTCAATAAC
ATGGAGCGAGAGCGGCAAGAACGTGCTTTAGAAGCGGAAGCTCGTATGCG
TCATGCTGTTGAGTGTGCTATTCGGATTCAGTCCGTGTTCCGGAAGCACA
AGGCTGTAATGGGATATCAAGCGCTCAAGAAATCAGGTAAGCTGGCGGGG
GGGGACAAAAAAGCCAAGAAAAAGAAACCGGGGGTAAAAGCAGGTACTAA
GGGCTTTGTCAAGAAAGCAAACATATCAAAAGCCGCAGTCAGTAACGTAT
CGAAGAATGAGTCGGCCACGCCCGTCAGGACACTCAGGAAGGCAGCACAT
GGCTCAAAAAAAGAGGGCGCTGGCAGGAAGATAATAAAGAAGACAAAATA
G
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Synonyms
Publications