|
|
Properties
| Property Name | Value |
|---|
| Product | choline transporter-like protein 1 |
| Orig transcript id | gnl|cribi|Naga_100030g48.4159.mrna |
| Orig protein id | gnl|cribi|Naga_100030g48.4159 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002470.1 | supercontig | CM002470.1:273570..275963 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7024 ID=rna7024|Name=rna7024|organism=Nannochloropsis gaditana|type=mRNA|length=4297bp
CAAGTGGGCTTGGTTGGGTCCTCACTTAAAATACATGTACATTAACAGAG
TTTGGGTGCGGGGACGCGGAGAAGCTGGGGGGATCGCTCCTTGTCGCACT
CTTGCTCGAAAGATTTCGAGGGGTCGAAGGGGCTAGCACCCTTGACATGG
CAGAGCCACGGCGGGCGGCAAGAGCCAAATCGTTCTCTTCACGAGTTGGC
CACAAGGGATGGTTTAGCCAATTATTTCGCAGGTCATCTACCAGTTTGAC
CACGAAAGAGACGCCCGTGGGGATAGGGATCCCTTTCGGCGTCCAGACTG
CCTTGCCCGACCAGAAGGAGGAGAGCAGCAGCAGCTCTTCGTCCTCGTCA
TCACAGAATATTACAAATGCGGGGTTACCAGGCAAAAGAATGCATGACAG
TAGTACAGACAGTCCTCAAGACTCACCGGCGACTCAAGCATCTCAAGAGG
AGACGCTTGCATCGGGCGTGCGCTCCGGACTCGAGCAAGCTGTGGGCAAG
CCCAACGCACGCAGTCCTCGCTCCCCCGCCAAGCTGAAGTTGGAGCTCAC
CTCGGACGTAAGAGGATCCTACGTGGGTGCCTCGGCTAAGATGCTGCGGA
GGCTGTCCACGTCCTCGCAGGTGGACTGGGGCGACGACAGCCCTGAAGAC
AGCGGCAGCGAGGGCCTGGCAGCGGGGGAGGAAGGGGGAGAAGGGGACGG
AGGTGGAGTTGAAGATACGGTAGGGAGCGAGACCGACTCGACGAACACAG
CCGACAACGTAGATTGGGACGATGAAGACGAGGAGGAGGACTCGTTGGGG
GAAGGGGAGCAACCCCCCATGGCTTCCACAATCCGGGACTCACGCCCGCC
CCCCCCCAAGGCGCAAGTGTCCTCCTCGGCGCGCACCCTGGCCACCACCC
CGCATGCCGGCATGGCCGCCAGTCGTAGCAATACTCCAGGAAGGCTGGAG
CGTCGCAAATGTCTACACATCAACGTGGAGGACGAAGACGGGGACTGCTA
CGATACCCGGGGGGGCGGCGGGCGTCGGATGGGTCCGAACGGAATGATTC
TCTCACAGGGCTACGGGGGCTACTATGGATCCCTTAGTGTCAGCAGCGCG
TCGCTTCCTCAGCAGGAGAAACCGGCGCCGACGGCAGGCTACGGCAGCTG
CACGAGCACTAGCAGCCGGGAGAGCAACGCCAGCAGCGGGAACAGCAGTG
CGCAGTCTTCGAGTCGGCTTGCGGCGGAGCACAGGGAGCTTTCCCAGCCC
TTCCTCTCACCGCTGTCTCAAGAAGCGAGGGGCGGGAGTGGAGGAGAAGA
CACTGAGCGCAGCGGGCCCTTCGCGGACGGTGCCGGGGGAAGAAATGCGC
AGGAGGCACTCGAGGGCGTGGGAGGGGGTGGTGAGGAGGGAGGCCTTGAG
GAGGGGCAGATGTGCACGGAGGCCCGTCAGGATATGAATTCGGCAGCAGC
TTCAGGAGGGATGGATGGAAGCGATGGGGAGGGGATGGCTCCTGCAGAAA
GATTCGAGCGTGGGGTGCCTGGGTGGGCCCCTGGGGGGGATGCGGCGCCC
GGTCAGTGCGTTCAATACCCGCCGCCGCTGCCTCACCATGAGGGCGACTT
CGTGTTTCGGCCCTCCGCAACCCTGAAGGCGGCGCGGGCGGCTCAGGAGG
ACGAAGATCTGGGCGAGGCGGGAGTGCGGGCGGGAGCAGGCGAGGGAGAG
GAGGAGGGGGTGGTCTTCTACCGCTCGGCCGGCGAGAACTTCGACCTGGG
CGGCTTCACCATCGGTCGTGGCGGACTGGTCAGCTCCCCCCGCAACAGCC
TTCGGAGGCGCCCCTCTTTGAACCAGGGGGATAACTTCCTGGTCCTGGCG
CGACTCGGGTCCGGGAATAGTGGCGCGGTCCACAAAGCCTTGCACGTGCC
GAGCATGCGCCTGGTCGCCCTGAAGGCTCTGCCTCTGTACGATGCCGGGA
GACGGGCGCAGGTCATGCGGGAGCTGAAAATTCTTTACTCGAATCTGGCC
AGCATCGACGCCAAGAGAATGACACGAGTGGAGCCGAGCATCGAGGACAT
GGAAGAAGACGGGGAGGAGGGCGGGGAGGAGGGCGGAAGGGAGGGCAAAG
TAGCCGAGGAGGGTTTGGGAGAGGAGAATGCGGATCCTGGGGCGTTGATG
GTGAGAAGGGATAGTCTGCACGGTGAAGAGGACAAGGAGCAGTGTGCTGC
GGGGCCTGAGAGGGAGGAGGGCGGGGTCGCGGACAAGGAGGACCTTGGGC
GCGAAATGGGAGGGGGGGCAGCAGCTTTCTCGACTGGACAGACAGGGATG
ACAACGTTGAGAGAGGCGACTGGGGTGCTGAGATTGGAAGAAAAGAAGGA
GGTAGAGGAGGCGAGGGAGGATATGAGATGGAGGGATGCGGGGTCTCCGG
CGGAGAAAGTGGAATCCAGCGCCGACGGGGGGCACTGTCCCTACATAGTC
TCCTTCTACGATGCCTTCGCGGACGCCAAGCACGGGTGCCTGACACTGGT
GGTGGAGTATATGAACGGGGGATCGCTGCAGGACTTGCTCGTGGACCGGG
GGGGCTGCGGGAGCGAGGACATACTGGCGCACGTGGCGTACAATGTGCTG
CAGGGACTGGAGTTCCTGCACGCGCGCAAGAAGATCCACCGGGACATCAA
GCCCTCCAACCTACTTCTCAATAGCGCGGGCTTCATCAAGCTGGCGGACT
TTGGGGTCTCCAGGTCCTTGGACGGGGGGGAGGCAGCGGAGGGGGAGGAA
GCGAAGCAGCCGCTAGCCGACACCTTCATCGGGACGCTCGGCTACATGAG
CCCCGAGAGGATCACCGGCCAGGGCTACTCTTTCGGCGCAGACATCTGGG
GCTTCGGCCTGAGCATGCTGGCCGTGGCTGTGGGCGCCTTTCCCCTCAAG
CAGCCCACGGCTTGCTACTGGGGCTTGGTGCACGCGGTCTGCGACAGCCC
GTCCCCGGAGGCCCCGCCTGCCTTTTCCCCCCTCTTCCGCGACTTTATTC
GACAGTGCCTGACCAAAGATCCGGGCCAGCGTGCCTCCTCGCACGCCCTC
CTTCAGCATCCCTTCATCGCCTCCCGCCACCACTTGCACAAGGACGCCCG
CGGCCATGTCATGGAGTTCTTGGAGGACCGGGAGGTCAAGGTCGCGGAGC
TGGAGACGGTCTGCCAGGTTCTAGCCAGACACTTGACGCAGAAGCGGAGG
AAGCTGGCGGCTGAGGCTGATTCCGCGTGTAGAAACTCTGAGTCGGATAC
AGGGTGGAAGAGAAGAATGAAGGTCGAAAAGGGGGAAGGTGCGCTGGGAG
AGGCGGAGGAGGAATGGCGAACTGGCGAGGGACGTGGGGAGGATAACAAG
CAAGAATCAGGTGTAGATAGGGATGAGGAGTGTGTCAGGGAGGGCGACAT
GGGGAAGGATATTGACGAGGAGGAGGACGGGAAGGAGGGGTGGCAATGTG
GCAAAGCGGGGATCGAGGGCCAGCGCGGTGAGGAGAAGGGAGAGCAGACA
AGGCTGCCCATGTTGCGAGAGACCATGGTGCAACGCCTGGCGGAGGAGCT
TGCTCTGGAGGAGGGACTTGTTGCAGAGAGCCTTGAGGCTGCTTTTGCCG
CCGCTGAGGAGGAGTCAGAAGAAGCACTGATAGCGAGGGCCCCCTCGCCC
CCTCCCTTGCTGCCCAAGAACTCTTCAGTCTTGTCACTGACCTCCTCATT
CGACTTGTCGATGCTGAAGAGAAGGGAGTCTCTCGAAGGTAAGGAGCGGA
CAGAGGGACGGAAGGCGGAGGAGGGGGAGGGAAAGCCTGAGATCTTCACG
AAGGTGACAGCAGAGAGTGCGTGGAGACAGGAAGAAGCAACGGGTCCAGA
ATTGGGGGCCGGGAAGCGAGATGAGAGAAATGTGGGCCTGCAAGGTCAGT
TAGAGCAGTGTCGATGAAAAGCAGTGGTGTGCAAGAGCTGGGAAGATTGA
GAGAGACGGAGCAATGCGGGGGGGATTTACACAGGTAGTGGAGGAAAAGG
TTTCAGTGTCTCAGTCTTTCTTTGACGCGGTTATCCAGATTCTTAAGGGC
GGCGTGGTGCTTTCCAAGTAACATGTGAATTTGAAAGGGCTTGGAATAAG
GTCGGTTGTGCATTGTGCATTTCTGGAGTAGGGAACGGTGAAAGGACGGC
ATGTGTGATGCCTTGAGGCAAAAGTTTAGCGAAAAGTTAGCAACCGAACG
AGCCCATGTGCACGGAAGGTTGCTGTTACACACACAAACAAAAGGGAATC
AGCTTGTCTCTTCATCATATGTCGAAATAAAGTGGGGCCTGTAGAGG back to topprotein sequence of rna7024 >rna7024-protein ID=rna7024-protein|Name=rna7024|organism=Nannochloropsis gaditana|type=polypeptide|length=699bp
MSKHPHAYIASIISAREPRSHSRTHPVPGGMPASAAGVTLTSGGNSVVPR
RYILSEQDEAHVNNSKFEAAADFQGPVKKRTCTDPCFLILLLGAWAVMSW
IGREAMLNGHVEVLTNGYDWNGTVCQGSTPFFMPLNIKTMGVCLEECPEI
YDPAVVFCIGEVAPTEDNIQKGYCIPQYPTKEIMNRCYITNSTALEAFSM
AKSYRDDLDVSVLTEFYGDVINARTFIFGIGFGAALILGFLWTWLLRTPG
LIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSDREVWVAKGL
GIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQA
AGLVLFLVPWSFYSVNIASMGHFEPRLFQGTGVNPFAEAGPEVIVQRFQY
GASGSDFAWYMLFVLLWTAQFIIAVGQITLALAVSTWYFTRDKGTIGSGT
LCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQY
LLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIM
RIGAVSLVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILV
VILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDE
NGGSSDGGNRKQNGNAHRTHYDDDDGTTGKIKSVKDKAEEAEIFAKVAC back to topmRNA from alignment at CM002470.1:273570..275963+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7024 ID=rna7024|Name=rna7024|organism=Nannochloropsis gaditana|type=mRNA|length=2394bp|location=Sequence derived from alignment at CM002470.1:273570..275963+ (Nannochloropsis gaditana)
CTTGCATTCTATTACGGACCTTTCAGCCCTAGGCCGATGAGATAAAGCAT
ATGGTCGAATCTCTCACTGCAAAAATGTCGTCCTGGTCTGTTCCATCGAC
TTACGATGAAAAATCGCTGACCGGCATgggccttctctttcatgTCAAAA
CACCCCCACGCTTACATCGCGTCCATCATATCTGCTAGAGAACCACGCTC
CCATAGTAGAACGCACCCGGTACCCGGTGGTATGCCTGCATCAGCTGCCG
GCGTTACCCTTACATCGGGCGGAAATTCTGTTGTCCCTCGCCGCTATATT
TTGTCGGAACAAGACGAGGCCCATGTAAATAATAGTAAGTTCGAGGCGGC
TGCAGACTTCCAAGGTCCCGTCAAGAAGCGTACATGTACGGATCCCTGCT
TTCTCATTTTATTGCTCGGGGCTTGGGCAGTCATGTCATGGATCGGACGG
GAGGCCATGTTGAATGGGCATGTTGAGGTCTTGACAAACGGATACGATTG
GAATGGCACTGTGTGCCAAGGTTCCACTCCCTTTTTCATGCCTCTGAACA
TCAAAACTATGGGCGTTTGCCTTGAGGAATGTCCCGAAATCTATGATCCG
GCTGTCGTCTTCTGCATCGGGGAGGTGGCCCCCACGGAGGACAACATCCA
GAAAGGCTACTGTATTCCTCAGTACCCGACCAAAGAGATCATGAATCGGT
GCTACATTACCAACAGCACGGCATTGGAGGCCTTCAGCATGGCTAAATCA
TACAGGGACGATCTGGATGTATCAGTTTTGACGGAGTTCTACGGAGACGT
GATAAATGCTCGGACCTTCATTTTCGGAATCGGCTTCGGCGCCGCACTGA
TCTTGGGATTCTTGTGGACATGGCTTTTACGTACCCCTGGTCTCATTTAT
GTGGCTGTTTGGACAGTCAATATGCTTGTGTGGGCGTGCTTGGGCGCCCT
AGGCGCGTTCATGTATCTGTGGGCGAATGACTGGAAGAATGATGTTCCCC
GGACGCATTCGGACCGCGAGGTTTGGGTGGCGAAAGGCCTCGGCATCTTT
TTCTTGGTAATGTGCGCCTTGTGGCTTTGCACGCTTGTCTTTTTGCGAAA
GCGGATCAACTTGGCAGTCGGATTAGTTAGGGAGGCGGCCCGGGCGGTGA
TCGACATGCCCCTGATTGTCCTGTACCCCTTTCTCCAAGCCGCCGGCCTT
GTGCTTTTTCTCGTGCCTTGGTCTTTTTACTCCGTCAACATTGCCTCCAT
GGGCCACTTCGAGCCTCGCCTTTTCCAAGGCACCGGCGTCAATCCATTTG
CGGAGGCTGGCCCCGAAGTAATCGTCCAGCGCTTTCAGTACGGCGCAAGC
GGCTCGGACTTCGCCTGGTACATGCTTTTTGTTCTTCTCTGGACCGCCCA
ATTCATAATCGCAGTCGGGCAAATTACCCTCGCTTTGGCCGTATCCACTT
GGTATTTCACGCGAGACAAGGGTACGATTGGAAGTGGTACTCTATGTAAG
GCTGTGGGCATCACGGGGCTCTATCATCTCGGGACAGCCGCATTCGGTTC
TTTGGTCATCGCTGTTGTCGAAGCAATCCGATCAATTATCGCCTACATAC
AAAAGATACTCAAGCGTTCAGAGAATAAGGTCGCACAGTACCTTCTCTGT
TGTTGTCAGTGTGGCTTTTGGTGTCTGGAAAAGATTTTGAAATTTGTTAA
CAAAAACGCCTACATTCAAACCGCTGTGAATGGGACCTCTTTCTGCACCT
CTGGGAAGATGGCATTTTTCCTCATCGCCCGCAATATCATGCGAATCGGA
GCGGTATCCCTTGTAAGCGAATTCGTCATAATAATCGGGAAGGTTTTTGT
CTCTGTTACTGCCGGCGCTATCTCTTTCTATACCATGACTTTCTTTTTGG
AAGACAGGATTCACTCGCCTATCGGTCCTACCATCCTAGTTGTAATATTG
GCGTGGTTTACTGCCGACATGTTCTGTCAGATTTTTTCGATGGCAGTTTC
TGCCTTGCTCCAAGCATTTATCGCAGACGAAGAAATGTTCGGCCCTGGTG
AGCGTTATGCCAGCACGGCGCTTGCTGTCTACATAGATGAAAATGGTGGC
AGCAGCGATGGTGGAAATCGAAAACAAAATGGAAATGCGCATCGCACACA
TtacgatgacgacgatggTACAACAGGCAAAATTAAAAGCGTAAAGGACA
AAGCTGAAGAAGCTGAAATATTCGCTAAAGTCGCTTGTTAGATCAGTCTC
AAAGAAATAAATGTAATCATGTATTAAGTGTAATATCACTCACGGCGCGC
CTTTCATGTCGTCGTTCTTCCACCGCACATTCAAAGCACACAATATGAAA
GAGAATGGCGTGATGTTTTGGTATTGTAAGTAATGACAACTTTC back to topCoding sequence (CDS) from alignment at CM002470.1:273570..275963+ >rna7024 ID=rna7024|Name=rna7024|organism=Nannochloropsis gaditana|type=CDS|length=2100bp|location=Sequence derived from alignment at CM002470.1:273570..275963+ (Nannochloropsis gaditana)
atgTCAAAACACCCCCACGCTTACATCGCGTCCATCATATCTGCTAGAGA
ACCACGCTCCCATAGTAGAACGCACCCGGTACCCGGTGGTATGCCTGCAT
CAGCTGCCGGCGTTACCCTTACATCGGGCGGAAATTCTGTTGTCCCTCGC
CGCTATATTTTGTCGGAACAAGACGAGGCCCATGTAAATAATAGTAAGTT
CGAGGCGGCTGCAGACTTCCAAGGTCCCGTCAAGAAGCGTACATGTACGG
ATCCCTGCTTTCTCATTTTATTGCTCGGGGCTTGGGCAGTCATGTCATGG
ATCGGACGGGAGGCCATGTTGAATGGGCATGTTGAGGTCTTGACAAACGG
ATACGATTGGAATGGCACTGTGTGCCAAGGTTCCACTCCCTTTTTCATGC
CTCTGAACATCAAAACTATGGGCGTTTGCCTTGAGGAATGTCCCGAAATC
TATGATCCGGCTGTCGTCTTCTGCATCGGGGAGGTGGCCCCCACGGAGGA
CAACATCCAGAAAGGCTACTGTATTCCTCAGTACCCGACCAAAGAGATCA
TGAATCGGTGCTACATTACCAACAGCACGGCATTGGAGGCCTTCAGCATG
GCTAAATCATACAGGGACGATCTGGATGTATCAGTTTTGACGGAGTTCTA
CGGAGACGTGATAAATGCTCGGACCTTCATTTTCGGAATCGGCTTCGGCG
CCGCACTGATCTTGGGATTCTTGTGGACATGGCTTTTACGTACCCCTGGT
CTCATTTATGTGGCTGTTTGGACAGTCAATATGCTTGTGTGGGCGTGCTT
GGGCGCCCTAGGCGCGTTCATGTATCTGTGGGCGAATGACTGGAAGAATG
ATGTTCCCCGGACGCATTCGGACCGCGAGGTTTGGGTGGCGAAAGGCCTC
GGCATCTTTTTCTTGGTAATGTGCGCCTTGTGGCTTTGCACGCTTGTCTT
TTTGCGAAAGCGGATCAACTTGGCAGTCGGATTAGTTAGGGAGGCGGCCC
GGGCGGTGATCGACATGCCCCTGATTGTCCTGTACCCCTTTCTCCAAGCC
GCCGGCCTTGTGCTTTTTCTCGTGCCTTGGTCTTTTTACTCCGTCAACAT
TGCCTCCATGGGCCACTTCGAGCCTCGCCTTTTCCAAGGCACCGGCGTCA
ATCCATTTGCGGAGGCTGGCCCCGAAGTAATCGTCCAGCGCTTTCAGTAC
GGCGCAAGCGGCTCGGACTTCGCCTGGTACATGCTTTTTGTTCTTCTCTG
GACCGCCCAATTCATAATCGCAGTCGGGCAAATTACCCTCGCTTTGGCCG
TATCCACTTGGTATTTCACGCGAGACAAGGGTACGATTGGAAGTGGTACT
CTATGTAAGGCTGTGGGCATCACGGGGCTCTATCATCTCGGGACAGCCGC
ATTCGGTTCTTTGGTCATCGCTGTTGTCGAAGCAATCCGATCAATTATCG
CCTACATACAAAAGATACTCAAGCGTTCAGAGAATAAGGTCGCACAGTAC
CTTCTCTGTTGTTGTCAGTGTGGCTTTTGGTGTCTGGAAAAGATTTTGAA
ATTTGTTAACAAAAACGCCTACATTCAAACCGCTGTGAATGGGACCTCTT
TCTGCACCTCTGGGAAGATGGCATTTTTCCTCATCGCCCGCAATATCATG
CGAATCGGAGCGGTATCCCTTGTAAGCGAATTCGTCATAATAATCGGGAA
GGTTTTTGTCTCTGTTACTGCCGGCGCTATCTCTTTCTATACCATGACTT
TCTTTTTGGAAGACAGGATTCACTCGCCTATCGGTCCTACCATCCTAGTT
GTAATATTGGCGTGGTTTACTGCCGACATGTTCTGTCAGATTTTTTCGAT
GGCAGTTTCTGCCTTGCTCCAAGCATTTATCGCAGACGAAGAAATGTTCG
GCCCTGGTGAGCGTTATGCCAGCACGGCGCTTGCTGTCTACATAGATGAA
AATGGTGGCAGCAGCGATGGTGGAAATCGAAAACAAAATGGAAATGCGCA
TCGCACACATtacgatgacgacgatggTACAACAGGCAAAATTAAAAGCG
TAAAGGACAAAGCTGAAGAAGCTGAAATATTCGCTAAAGTCGCTTGTTAG back to top
|