EWM23662.1, cds7007 (CDS) Nannochloropsis gaditana

Overview
NameEWM23662.1
Unique Namecds7007
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:273711..275810 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23662.1
Productcholine transporter-like protein 1
Orig transcript idgnl|cribi|Naga_100030g48.4159.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:273711..275810 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like
Homology
BLAST of EWM23662.1 vs. NCBI_GenBank
Match: gi|585104816|gb|EWM23662.1| (choline transporter-like protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 1445.64 bits (3741), Expect = 0.000e+0
Identity = 699/699 (100.00%), Postives = 699/699 (100.00%), Query Frame = 0
Query:    1 MSKHPHAYIASIISAREPRSHSRTHPVPGGMPASAAGVTLTSGGNSVVPRRYILSEQDEAHVNNSKFEAAADFQGPVKKRTCTDPCFLILLLGAWAVMSWIGREAMLNGHVEVLTNGYDWNGTVCQGSTPFFMPLNIKTMGVCLEECPEIYDPAVVFCIGEVAPTEDNIQKGYCIPQYPTKEIMNRCYITNSTALEAFSMAKSYRDDLDVSVLTEFYGDVINARTFIFGIGFGAALILGFLWTWLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSDREVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSVNIASMGHFEPRLFQGTGVNPFAEAGPEVIVQRFQYGASGSDFAWYMLFVLLWTAQFIIAVGQITLALAVSTWYFTRDKGTIGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDENGGSSDGGNRKQNGNAHRTHYDDDDGTTGKIKSVKDKAEEAEIFAKVAC 699
            MSKHPHAYIASIISAREPRSHSRTHPVPGGMPASAAGVTLTSGGNSVVPRRYILSEQDEAHVNNSKFEAAADFQGPVKKRTCTDPCFLILLLGAWAVMSWIGREAMLNGHVEVLTNGYDWNGTVCQGSTPFFMPLNIKTMGVCLEECPEIYDPAVVFCIGEVAPTEDNIQKGYCIPQYPTKEIMNRCYITNSTALEAFSMAKSYRDDLDVSVLTEFYGDVINARTFIFGIGFGAALILGFLWTWLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSDREVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSVNIASMGHFEPRLFQGTGVNPFAEAGPEVIVQRFQYGASGSDFAWYMLFVLLWTAQFIIAVGQITLALAVSTWYFTRDKGTIGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDENGGSSDGGNRKQNGNAHRTHYDDDDGTTGKIKSVKDKAEEAEIFAKVAC
Sbjct:    1 MSKHPHAYIASIISAREPRSHSRTHPVPGGMPASAAGVTLTSGGNSVVPRRYILSEQDEAHVNNSKFEAAADFQGPVKKRTCTDPCFLILLLGAWAVMSWIGREAMLNGHVEVLTNGYDWNGTVCQGSTPFFMPLNIKTMGVCLEECPEIYDPAVVFCIGEVAPTEDNIQKGYCIPQYPTKEIMNRCYITNSTALEAFSMAKSYRDDLDVSVLTEFYGDVINARTFIFGIGFGAALILGFLWTWLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSDREVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSVNIASMGHFEPRLFQGTGVNPFAEAGPEVIVQRFQYGASGSDFAWYMLFVLLWTAQFIIAVGQITLALAVSTWYFTRDKGTIGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDENGGSSDGGNRKQNGNAHRTHYDDDDGTTGKIKSVKDKAEEAEIFAKVAC 699          
BLAST of EWM23662.1 vs. NCBI_GenBank
Match: gi|299471550|emb|CBN80036.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 383.259 bits (983), Expect = 2.754e-120
Identity = 229/649 (35.29%), Postives = 348/649 (53.62%), Query Frame = 0
Query:   43 GGNSVVPRRYILSEQDEAHVNNSKFEAAADFQGPVKKRTCTDPCFLILLLGAWAVMSWIGREAMLNGHVEVLTNGYDWNGTVC-------QGSTPFFMPLNIKTMGVCLEECPEIY-------------------------DPAVVFCIGEVAPTEDNIQKGY-------CIPQYPTKEIMNRCYITNSTALEAFSMAKSYRDDLDVSVLTEFYGDVINARTFIFGIGFGAALILGFLWTWLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSDREVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSVNIASMGHFEPRLFQGTGVNPFAEAGPEVIVQRFQYGASGSDFAWYMLFVLLWTAQFIIAVGQITLALAVSTWYFTRDKGTIGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDENG 652
            G NSV P+        E     +K  A  D +G   +R CTD  F+++L+ AW  M+++G + + NG+ ++L NG D++G +C         S  +++  +    GVC+EECP +                          DP       +V PT               C+ Q  + + + RC  +    L+ F          DV+ L E   DV  AR +IFG GF  + ILGF +  +L+ PGL+ + +W     V+  L A+G      + DW+ D    H+D +V  ++  G        L+LC +VFLRK+I LA G+++E+ RA+  + ++   P LQ A +V FLVPW  YSV  ASM         G            + V+ F+Y        WY+LFV  WT QF++A+GQI +AL V  +YFTRD  T+ +GT  K++     +H GTAAFGSL+IA+++ IR+++ Y+QK L++S +K AQ +LCC  C FWCLEK +KF+NKNAYIQ A+  TSFC S K AF+LIARN+ R+GAV++V++FV+ I K+ + +     ++  +  F++D ++SP+GP     ++A++ A  F  +  M    +LQ FIADEEMF   +RYA   L  ++D +G
Sbjct:    2 GPNSVTPK--------EGEKRGAKLAAPDDIEGGADRR-CTDVLFMLVLILAWLAMTYLGVDGISNGNPDLLLNGIDYDGRICGVDDGVKDKSKLYYIRFD--GTGVCVEECPTVTNFDHLWGCTDEFSGFTVDEGYDCSDDPLECAAKADVDPTGAEDGGFGGGDGAGVCMYQVESVDFVGRCVFSEPEVLDKFVDVGG-----DVAYLQEAASDVYAARGWIFGFGFCFSTILGFFYLGMLQLPGLVCMMIWGSIACVFFILVAMGFGFVSLSEDWEGD--GEHTDTQVMGSRVTGYLAYGCAFLFLCLIVFLRKQIALANGIIKESVRAIGTVKMMFFMPLLQCAAIVAFLVPWVVYSVYTASMADITTEEVAG------------LTVKSFEYSDEVEKRGWYLLFVFFWTTQFVVAMGQIVVALTVVKYYFTRDVETVNNGTFWKSLKEGLRFHTGTAAFGSLIIAIIKTIRAMLTYMQKKLQKSGSKAAQAVLCCLSCFFWCLEKCVKFINKNAYIQVAIFSTSFCRSSKNAFWLIARNLGRVGAVTVVTDFVVFIMKLVIGLGTAGATYVFLQNFMKDDLYSPMGPVFFAGVMAYYVASSFAALLGMTTLTILQCFIADEEMFEGEDRYARNDLKDWLDAHG 620          
BLAST of EWM23662.1 vs. NCBI_GenBank
Match: gi|298709154|emb|CBJ31098.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 377.867 bits (969), Expect = 6.662e-119
Identity = 219/574 (38.15%), Postives = 327/574 (56.97%), Query Frame = 0
Query:   90 LLLGAWAVMSWIG--------REAMLNGHVEVLTNGYDWNGTVCQGSTP-------FFMPLNIKTMGVCLEECPEIYDPAVVFCIGEVAPT-------EDNIQK-------GYCIPQYPTKEIMNRCYITN---------STALEAFSMAKSYRD--------DLDVSVLTEF---YGDVINARTFIFGIGFGAALILGFLWTWLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDW-KNDVPRTHSDREVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSVNIASMGHFEPRLFQGTGVNPFAEAGPEVIVQRFQYGASGSDFAWYMLFVLLWTAQFIIAVGQITLALAVSTWYFTRDKGTIGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQ 613
            +L  AWA M+ +G         + +  G+ + L NG D+ G +C   T        +F+P      GVC+EECP   +     C  EV P        E +IQ+       G C+    T  I++ C   +         + A+EA  MA +             DVS  T F   + D++ AR  I G G G ++++G  +   LR PG++++ +W +   VWA L   G  +   +  W   + PR HSD EV  AK L      MC +W   +++ RKRI +A+ + +EA+RAV DM L++L+P +Q+A L++FL+PW  + + +AS G      ++ TG      AG  + V++F+Y  +    A Y LF   WT++FI+A+GQI +A+AV++WYF RDK TIGSGT+  +V  +  YH GTAAFGSL+IA+++ IR+I+AYIQK  K + NK+ Q +LCC QC  WCLEK +KF+NKNAYIQTA+ G SFCT+ K AFFLIARNIMR+ AV +VSE V+I+GKV + + +  + +      + D +H  +  ++LV I+A+F A+MF +
Sbjct:    1 MLFAAWAAMTMLGFIVTGLIPNDGLEPGNPKRLLNGIDYEGRICGVGTTVQERENIYFLP---SGNGVCVEECPATTNYTQFICYDEVYPEIFNNETGEVDIQEAWTRVSAGDCLYHMATTNILSYCVFDSVIDLADEAATLAVEA-EMANALNGTNANYTVVSSDVSESTWFEDVFADMLTARGLIGGFGLGVSVLVGTAYLLFLRIPGVLFLLIWGLLFGVWAILAGAGVMLLQTSETWGAEEEPRIHSDGEVNAAKYLSYIMFGMCVVWALLMLWFRKRIKMAIAITKEASRAVNDMKLLILFPVVQSAALLIFLLPWVTFVLYLASSGEITTEQWE-TG------AGTTITVKQFKYTDNIRYTALYFLFAYFWTSEFIVAMGQIVVAMAVASWYFCRDKSTIGSGTVLSSVKTSLFYHSGTAAFGSLIIAIIKTIRAIVAYIQKKTKDTHNKILQAVLCCVQCCLWCLEKCMKFLNKNAYIQTAIFGYSFCTAAKKAFFLIARNIMRVMAVGVVSEVVLILGKVMIPLVSTVLFYVCAEATISDELHGMVAISVLVFIVAFFVANMFTE 563          
BLAST of EWM23662.1 vs. NCBI_GenBank
Match: gi|219118458|ref|XP_002180001.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408258|gb|EEC48192.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 351.288 bits (900), Expect = 4.969e-108
Identity = 220/663 (33.18%), Postives = 353/663 (53.24%), Query Frame = 0
Query:   57 QDEAHVNNSKFEAAADFQGPVKKRTCTDPCFLILLLGAWAVMSWIGREAMLNGHVEVLTNGYDWNGTVC-------QGSTPFFMPLNIKTMGVCLEECPEI----------------YD-------------PAVVFCIGEVAPTEDNIQ--KGYCIPQYP----------------------TKEIMNRCYITNSTALEAFSMAKSYRDDLDVS-----VLTEFYGDVINARTFIFGIGFGAALILGFLWTWLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSDREVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSVNIASMGHFE--PRLFQGTGVNPFAEAGPEVIVQRFQYGASGSDFAWYMLFVLLWTAQFIIAVGQITLALAVSTWYFTRDKGTIGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDENG 652
            +DE H    K  A ADF GP K R CTD   L+ L+  W  M+ +G  A+ NG   ++    D++G VC           P+ + +N  T GVC++ECP++                Y+             P     +G+ + + D I      C PQ                        + E++ RCY+T   +     +  S    L ++       T+ Y D+  AR ++ G GFG ++++ F++ +L+R P ++   VW+   +  A     G + +++A+DW ++VP+T S+  +       I   V+  + +     LR +I  A+G V++A +AV  M +I+L P LQA G + FL+ + +Y  N+AS+G          GTG         E+  +++++     +  WY+LF L WT+ FI+AVG + +A++VS WYFT++K TIGS T+  ++  T  YH GT A+GSL++AVV+ IR++IA  QK  K + +K+A  +LCCCQC F CLE  LKF+NKNAYIQTA+  T+FC S + AF+LI RN  RI A+S VS  V+I+GK+F+S    ++S+Y +   +E+ +HS  GP  +V +++++ +D F  +F MA+S +L   IADEEMF     Y   +L  ++D++ 
Sbjct:    3 RDEEH---DKLVAPADFDGPTKDRHCTDILMLLALIAMWVAMTGVGIYAVTNGDYRLVLYPLDYDGNVCGTDFGLDMTEFPYLLYVNSYTGGVCVKECPDLTGKVSDNLTDIGTLVTYNGVFQADNGSLSELPLDYIQVGDYSSSTDAISCTDDTCFPQQSPSLSWVSNGVNQGFGYAYYAADSYELLWRCYLTTEASARIEELVSSQSGGLQIAGDASQFFTKLYADLWVARKYVLGFGFGVSVLVSFVYIFLMRLPLILTAMVWSSIFISIALFFVSGYYAWVFASDWSDEVPQTVSNTTINATTAASIVLYVIGGIMILLACCLRSQIQTAIGCVKQAGKAVNCMIIILLVPVLQAVGFLAFLIVFGYYGANLASLGKISVVEVPLDGTGTQ-------EIAFRKYEFDDFVENCGWYLLFCLFWTSNFIVAVGDMIVAISVSKWYFTKNKVTIGSWTVLTSIWQTLFYHAGTCAYGSLILAVVQMIRAMIARAQKAAKDANSKIAGAILCCCQCFFCCLECCLKFLNKNAYIQTAIFSTAFCKSCRQAFYLIFRNAARIAAISYVSGAVLIVGKLFISAVTTSVSYYFIAEDIENELHSVGGPVAIVFLISYWVSDFFMDVFDMAISTILHCVIADEEMFDGEAGYTEKSLKNWVDKHA 655          
BLAST of EWM23662.1 vs. NCBI_GenBank
Match: gi|1210524129|dbj|GAX16858.1| (solute carrier family 44 (choline transporter-like protein), member 2/4/5 [Fistulifera solaris])

HSP 1 Score: 351.288 bits (900), Expect = 1.007e-107
Identity = 238/680 (35.00%), Postives = 353/680 (51.91%), Query Frame = 0
Query:   56 EQDEAHVNNSKFEAAADFQGPVKKRTCTDPCFLILLLGAWAVMSWIGREAMLNGHVEVLTNGYDWNGTVC-------QGSTPFFMPLNIKTMGVCLEECPEI----------------YD-------------------------PAVVFCIGEV--------APTEDNIQKGYCIPQYP--TKEIMNRCYITNSTA--------LEAFSMAKSYRDDLDVSVLTEFYG-------DVINARTFIFGIGFGAALILGFLWTWLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSDREVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSVNIASMGH-------FEPRLFQGTGVNPFAEAGPEVIVQR-FQYGASGSDFAWYMLFVLLWTAQFIIAVGQITLALAVSTWYFTRDKGTIGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDENGGS 654
              DEA   N K  A ADF GP   R CTD   L++L+ AW VM+ +G  A+  G   ++    D++G +C         + P  + +N  + GVC++ CP++                YD                           V+ C            +P    ++ GY    Y   T  ++ RCY+T +           E  S  ++  D + +  + + Y        D+  AR ++ G GFG +LI+  L+ ++LR P L+   VW    L        G + +  A DW    P+T  D  +    G  I   V+ AL +     +RK I +A+  V++A RAV +M LI+  PFLQAA LV F V WS YSV++AS+G         +P    G  +    +   + +  R F +    +  ++Y+LF L WTA FI+AVG + +A+AV+ W+F R+K T+GS T+  +V  T  YHLGT A+GSL++A+V+ IR IIA +QK  K ++NK+A+Y+LCCCQC FWCLE+ LKF+NKNAYIQTA+  TSFC S + +FFLI RN  R+GAV+ VS  V+IIGK+F+S      ++  +T  L D + S  GP  +  ++A++ +D F  +F MA+S +L  FIADEEMFG    YA   L  Y+D++G  
Sbjct:    2 SDDEA---NEKLVAPADFDGPTSTRHCTDVFCLLILIAAWVVMTGVGLYAVGEGDYRLVLYPLDYDGNICGTDFKNDMTAYPNLLYVNSFSGGVCVDACPDLTNKTQDGVSDVHTLITYDGVWQPSSGGAQLPLDYVKVADYSNASDVMSCTDATCWDTEAYTSPYSPGVRLGYGYAFYAGTTYGVLGRCYMTTAALDRIEEQLNFEVASATEAASDLMGIGAVEDAYAFWNRVFADLWTARVYVLGFGFGVSLIVSSLYIFMLRLPFLLNTVVWGSIFLTIGMFFFGGYYAWNVATDWDEAEPQTVEDTTITATTGAAIALWVVGALLVVLTCCMRKAIQVALLCVKQAGRAVNNMILILTVPFLQAAALVAFFVVWSIYSVHLASLGEIVTKEVALDPSTLTGQDLPEMDQGLIQPVHYRVFLFDEFVTRCSYYLLFCLFWTANFIVAVGDMIVAVAVAKWFFARNKMTVGSWTVISSVRETVTYHLGTCAYGSLLVAIVQFIRYIIAKLQKKAKETQNKIAEYILCCCQCCFWCLERCLKFINKNAYIQTAIFSTSFCKSCRASFFLIFRNAARVGAVTYVSSAVLIIGKLFISAVTTGFAYIAITERLNDELFSVGGPVTITFLIAYWMSDFFMGVFDMAISTVLHCFIADEEMFGGNGSYADQHLKDYVDKHGAQ 678          
BLAST of EWM23662.1 vs. NCBI_GenBank
Match: gi|1210527239|dbj|GAX13874.1| (solute carrier family 44 (choline transporter-like protein), member 2/4/5 [Fistulifera solaris])

HSP 1 Score: 346.28 bits (887), Expect = 7.133e-106
Identity = 241/683 (35.29%), Postives = 357/683 (52.27%), Query Frame = 0
Query:   56 EQDEAHVNNSKFEAAADFQGPVKKRTCTDPCFLILLLGAWAVMSWIGREAMLNGHVEVLTNGYDWNGTVC-------QGSTPFFMPLNIKTMGVCLEECPEI----------------YD-------------------------PAVVFCIGEV--------APTEDNIQKGYCIPQYP--TKEIMNRCYITNST--------ALEAFSMAKSYRDDLDVSVLTEFYG-------DVINARTFIFGIGFGAALILGFLWTWLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSDREVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSVNIASMGHFEPRLFQGTGVNPFAEAG---PEV---IVQRFQYGASGSD-----FAWYMLFVLLWTAQFIIAVGQITLALAVSTWYFTRDKGTIGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDENGGS 654
              DEA   N K  A ADF GP   R CTD   L++L+ AW VM+ +G  A+  G   ++    D++G +C         + P  + +N  + GVC++ECP++                YD                           V+ C            +P    ++ GY    Y   T  ++ RCY+T +           E  S  ++  D + +  + + Y        D+  AR ++ G GFG +LI+  L+ ++LR P L+   VW    L        G + +  A DW    P+T  D  +    G  I   V+  L +     +RK I +A+  V++A RAV +M LI+  PFLQAA LV F V WS Y+V++AS+G    +  +   ++P A  G   PE+   ++Q   Y     D      ++Y+LF L WTA FI+AVG + +A+AV+ W+F R+K T+GS T+  +V  T  YHLGT A+GSL++A+V+ IR IIA +QK  K ++NK+A+Y+LCCCQC FWCLE+ LKF+NKNAYIQTA+  TSFC S + +FFLI RN  R+GAV+ VS  V+IIGK+F+S      ++  +T  L D + S  GP  +  ++A++ +D F  +F MA+S +L  FIADEEMFG    YA   L  Y+D++G  
Sbjct:    2 SDDEA---NEKLVAPADFDGPTSTRHCTDVFCLLILIAAWVVMTGVGLYAVGEGDYRLVLYPLDYDGNICGTDFKNDMTAYPNLLYVNSFSGGVCVDECPDLTNKTQDGVSDVHTLITYDGVWQPSSGGAQLPLDYVKVADYSNASDVMSCTDATCWDTEAYTSPYSPGVRLGYGYAFYAGTTYGVLGRCYMTTAALDRIEEQLNFEIASATEAASDLMGIGAVEDAYAFWNRVFADLWTARAYVLGFGFGVSLIVSSLYIFMLRLPFLLNTVVWGSIFLTIGMFFFGGYYAWNVATDWDEADPQTVEDTTITATTGAAIALWVVGVLLVVLTCCMRKAIQVALLCVKQAGRAVNNMILILTVPFLQAAALVAFFVVWSIYAVHLASLGEIVTKEVE---LDPSALTGEDLPEMDQGLIQPVHYRVFLFDEFITRCSYYLLFCLFWTANFIVAVGDMIVAIAVAKWFFARNKMTVGSWTVISSVRETVTYHLGTCAYGSLLVAIVQFIRYIIAKLQKKAKETQNKIAEYILCCCQCCFWCLERCLKFINKNAYIQTAIFSTSFCKSCRASFFLIFRNAARVGAVTYVSSAVLIIGKLFISAVTTGFAYIAITERLSDELFSVGGPVTITFLIAYWMSDFFMGVFDMAISTVLHCFIADEEMFGGNGSYADQHLKDYVDKHGAQ 678          
BLAST of EWM23662.1 vs. NCBI_GenBank
Match: gi|224001702|ref|XP_002290523.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973945|gb|EED92275.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 329.331 bits (843), Expect = 1.566e-100
Identity = 201/596 (33.72%), Postives = 317/596 (53.19%), Query Frame = 0
Query:   78 KKRTCTDPCFLILLLGAWAVMSWIG--------REAMLNGHVEVLTNGYDWNGTVCQGSTPFFMPLNIKTMG------------VCLEECPEIYDPAVVFCIGE---VAPTEDNIQKGY-----CIPQYPTKEIMNRCY-----ITNSTALEAFSMAKSYRDDLDVS--VLTEFYGDVINARTFIFGIGFGAALILGFLWTWLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSD-----REVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSVNIASMGHFEPRLFQGTGVNPFAEAGPEVIVQRFQYGASGSDFAWYMLFVLLWTAQFIIAVGQITLALAVSTWYFTRDKGTIGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMF 633
             +RTCTD  FL+LL+ AW  M+ +G         E +  G    L NG D++  +C G T +  PL    +             VC+E CP + +     C  E   +  T+ ++Q  +     C+P   +   ++ C      +T S       ++ +  D ++       +   DV N R  IF  G G A++LG ++  +++ PG + + VWT+ + V A L   G +    +  W +   R  ++        +V  GL +       LW+  + ++R+RI LA+  V+E+ARA+  MP++ L+P  Q  GLV F V W  Y   +AS G         TG      +    + +   Y  +    A YMLF+  WT+QF++AVGQ+ +A++VS WYF+RD+  IG+ T C+ + +   +HLGTAAFGSLVIA+V+ I +I+ Y+QK L +S+ ++A  LL       WC+EK LKF+NK AY QTA+   SFC + +M FFLI RN +RI AVS+VS  V+ I K F++V +    +Y +     D ++  + PT+L+ ++A+  ++MF ++F M++S LLQ FIADEEMF
Sbjct:    3 SRRTCTDVLFLLLLVCAWIAMTGVGLAATGLIKSEVIKKGDPRRLINGLDYHANIC-GVTNYQTPLGADVINLPKAYPLPSGYFVCVERCPSVTNYDEFHCEYETVDITNTKKSLQIAHTSQKQCMPYIKSTSFLSYCIPDIPNVTTSNNETHTEISITMEDQINSQSDFFDKLMTDVYNVRYVIFYFGCGMAMVLGIVFLVVIQLPGFLSLLVWTMIIAVDASLIGAGWYTKETSLKWASSETRGGNEAVALFYASYVLYGLAV-------LWVMIICYIRRRIVLAIYCVKESARAISAMPVMTLFPVAQVLGLVAFTVVWGIYMAFLASSGDV-------TG------SYGCFLYKELTYSTNTKYAALYMLFMWFWTSQFLVAVGQLVVAVSVSLWYFSRDRSQIGNTTFCRVLYLVSFHHLGTAAFGSLVIAIVKTIGTILTYVQKRLSKSQLRLAVLLLKVLHNLMWCIEKCLKFINKQAYCQTAIFSYSFCKAARMGFFLILRNALRISAVSIVSRIVLFINKTFITVASTVAGYYYLEMHFGDELNLLMMPTLLIGLVAYAVSEMFDEVFGMSISTLLQCFIADEEMF 577          
BLAST of EWM23662.1 vs. NCBI_GenBank
Match: gi|224003363|ref|XP_002291353.1| (hypothetical protein THAPSDRAFT_262743, partial [Thalassiosira pseudonana CCMP1335] >gi|220973129|gb|EED91460.1| hypothetical protein THAPSDRAFT_262743, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 295.049 bits (754), Expect = 8.300e-91
Identity = 145/319 (45.45%), Postives = 216/319 (67.71%), Query Frame = 0
Query:  315 LVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSVNIASMGHFEPRLFQGTGVNPFAEAGP-EVIVQRFQYGASGSDFAWYMLFVLLWTAQFIIAVGQITLALAVSTWYFTRDKGTIGSGTLCKAVGITGLYHLGTAAFGSLVIAVVEAIRSIIAYIQKILKRSENKVAQYLLCCCQCGFWCLEKILKFVNKNAYIQTAVNGTSFCTSGKMAFFLIARNIMRIGAVSLVSEFVIIIGKVFV-SVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEE 631
             +F+RKRI LA+G V+E ++A+  MP I+++P +Q  GL++F++ W  Y  ++ASMG F    +         +AGP ++ V+ F++        WY+LF   WT+QFI+A+G+I  A++VS WYF+RDK  IGS T+  ++  +  YH GTAAFGSL+IA+++ IRS +AY+Q+  +  ++ +A+ +LCC QC FWCLEK ++F+NKNAYIQTA+ G+SFCTS K AFFLI RN  RI A++ VS  V+ IGKVF+ S+T GA   Y M   + D ++S IGP   +  ++WF A MF  ++ M ++ +LQ F+ADEE
Sbjct:    6 FLFMRKRIQLAMGCVKETSKAITAMPGIIVFPVIQGLGLMVFMIAWCVYVAHLASMGDFSTSQY---------DAGPIKISVRTFEFSNFVKQCGWYLLFCFFWTSQFILAMGEIIFAMSVSKWYFSRDKSNIGSATVWTSIATSMWYHSGTAAFGSLIIAIIKMIRSFLAYLQRKAEEMDSSIAKAVLCCFQCCFWCLEKCMRFLNKNAYIQTAIFGSSFCTSAKEAFFLILRNAARIAAITYVSGGVMFIGKVFITSLTTGAAYVY-MDQEIGDELYSIIGPLFFIAAISWFIAGMFMGVYDMGIATILQCFVADEE 314          
BLAST of EWM23662.1 vs. NCBI_GenBank
Match: gi|553184136|ref|XP_005854035.1| (choline transporter-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295024|gb|EKU22323.1| choline transporter-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 267.7 bits (683), Expect = 5.259e-83
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0
Query:  557 LVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDENGGSSDGGNRKQNGNAHRTHYDDDDGTTGKIKSVK 685
            LVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDENGGSSDGGNRKQNGNAHRTHYDDDDGTTGKIKSVK
Sbjct:    1 LVSEFVIIIGKVFVSVTAGAISFYTMTFFLEDRIHSPIGPTILVVILAWFTADMFCQIFSMAVSALLQAFIADEEMFGPGERYASTALAVYIDENGGSSDGGNRKQNGNAHRTHYDDDDGTTGKIKSVK 129          
BLAST of EWM23662.1 vs. NCBI_GenBank
Match: gi|553184139|ref|XP_005854036.1| (choline transporter-like protein 1-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295025|gb|EKU22324.1| choline transporter-like protein 1-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 251.136 bits (640), Expect = 9.313e-77
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query:  244 WLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSDREVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSV 365
            WLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSDREVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSV
Sbjct:    1 WLLRTPGLIYVAVWTVNMLVWACLGALGAFMYLWANDWKNDVPRTHSDREVWVAKGLGIFFLVMCALWLCTLVFLRKRINLAVGLVREAARAVIDMPLIVLYPFLQAAGLVLFLVPWSFYSV 122          
The following BLAST results are available for this feature:
BLAST of EWM23662.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104816|gb|EWM23662.1|0.000e+0100.00choline transporter-like protein 1 [Nannochloropsi... [more]
gi|299471550|emb|CBN80036.1|2.754e-12035.29conserved unknown protein [Ectocarpus siliculosus][more]
gi|298709154|emb|CBJ31098.1|6.662e-11938.15conserved unknown protein [Ectocarpus siliculosus][more]
gi|219118458|ref|XP_002180001.1|4.969e-10833.18predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210524129|dbj|GAX16858.1|1.007e-10735.00solute carrier family 44 (choline transporter-like... [more]
gi|1210527239|dbj|GAX13874.1|7.133e-10635.29solute carrier family 44 (choline transporter-like... [more]
gi|224001702|ref|XP_002290523.1|1.566e-10033.72predicted protein, partial [Thalassiosira pseudona... [more]
gi|224003363|ref|XP_002291353.1|8.300e-9145.45hypothetical protein THAPSDRAFT_262743, partial [T... [more]
gi|553184136|ref|XP_005854035.1|5.259e-83100.00choline transporter-like protein, partial [Nannoch... [more]
gi|553184139|ref|XP_005854036.1|9.313e-77100.00choline transporter-like protein 1-like protein, p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7024rna7024Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications