rna7018, rna7018 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7018
Unique Name	rna7018
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1938
Alignment location	CM002470.1:253595..255328 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100030g41.4191.mrna
Orig protein id	gnl\|cribi\|Naga_100030g41.4191
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:253595..255328 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g41	gene6784	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7018	rna7018-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23694.1	cds7001	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:253595..255328+
coding sequence from alignment at CM002470.1:253595..255328+

mRNA sequence

>rna7018 ID=rna7018|Name=rna7018|organism=Nannochloropsis gaditana|type=mRNA|length=1938bp
ATGGCTGGCAGTACACATAGTGTTGGCGTGCGTCTTGCAGAGGGGTGTGT
ACCTTCGACAGCCATGATGGCTCAGGAACCCCTCTCATCGGAAGGAAAAC
GGGCGAGGACAGGAGGAAACGCCACGCAGAGCGCAAGCATGCCAGCCTCG
TCGCCTATGGATGTCCGCGCGCAGCATCACATTCGTCAAGCACCCGATCA
TTTTGAAGATGCGCAGTCAAATCAGCGGCCTCACGGGGGGCAACAGCAAC
AGCTCACTTCGGCAGGGCATGGGGAAGCGCAGGGCGTCTCACAGGAGGTA
TCGCCTCCGACGACACGTGCAGTGTTGCTGGGTCCGTACGCCGACCTTTT
TCGATTCTATCTAGAGCACGTGGACAAGTATATGCCGAGTGCTCGTCAGG
ATAACGTGCTCAAGCTCGAGCAGTGGAAACAATTCATAAGCAATCAGGTG
GCCGCATTGGAATTATCCTCTTCCGCCAACACTCTACTGACGTCCAAGCA
GGAAGAAGCCATAAAGAAGGCCATCCTCTTCGTCCACCGATGGCACGAGC
AGTATCAGAAAGCAGTGCAGGCCAAGGTGGTTCGAATGTCCGCAGCAAAT
GCGGTCCAGGACGTGCAAGCGTCGGCGCGGCAACCCACTATCTCCACCGT
GTTCAAGACCGACCTAGAGACGGAGTTGGCGATGTTGGAGCAAGGTTTTT
CGCAATGTTCTTATATGAATATATCAGAGGGGGCGGGCGTCAAGACAGAG
GAGCTACAGGAAAGACTTTTACTAGGAAATGCAGTTGCGCAGCGACTGTC
GGATGACGCAGCCATGGCCCCAAGGGTGCATTCGCGGCTCTCATGGGATG
TGTTGCAGGCAAAAGTACAGACCATGGTCAGGGAGGGGCGGGAGACCAAG
CGTCTGAACGTGCTCAGAGCCATTCCTGACCTTGTGACGGCTGCCTTGAA
GAAGCGGGGCCTGCCGTCGGACCCGGCCGCGACGCCAGTGCTGTCTACGC
CTTCGAAGCGGCCTGAGAGCTTGGACGGGGTGTTGACGAGGTTGCGGACC
ACCTATAACGCGGCGCTGGCATGTCTGGCTGAGCATGGAGGGGGACAGTC
AGGGGGCGGTGGGGAGGGGCCGGGGGGGGACGGGAGCAAGCCTGTAGGGG
TGGGTTTCATGAAGGCACTAGAGTTGTTGAAAAGTGTAGACGTCATGTTG
CAAGAGCTTCGAAGGCATCAGAAGATGGGAGTAGCGGCGGACACAGGACG
CTCGGATCCTTGGCAGCCCGGTCGAGGTACGGCCAGGGGCCCTGGGGAGG
GCGACCCGCAAGCTCTGGATCAATTTTTGAACGCGCTTCAGTCCCGAGAG
GGCGGTGTGTCCTTGAATTCGCCTCGATTAATGATTGAGACTCTGAAGCC
AGGAGAAGCTTGGTTGGAGGACCTACGCTCTCCGGCAACCGGCATTCGTG
CCGTAACGGCTGTTGAAGAAGTCCTTCGAGCTTCAAGTCATTTCAAAGAC
TTCGCCTTCTCGAGCTCAAGCCACCATAACACGATTTCCGCCACTTTCAA
GAAAGGCCAATGGGAAGCCGAGATATTATTGGCAGAGAGATTGACTCGAG
CAGAGCGAGATCGCTCGGCAGGGGCGGCAACGGAGGGGACACTTTTCCCG
CTTCTTGTGTGGGTGAGTGCTGCTGGAAATCGAGCCTCGAGCTGGAGTGG
GAGATTGGAGCAAGAAGTTCGAGCGGCTTTGCTCCGGTGGCGAGACTGGA
CACAGGATGACCCTGTCCAAACGATTGCAGCCGTCCTAGAAGAATTGCGT
TTGCGTGTTCAGCACGGTGCGCGTTGTGATCTCACTGGTAGGATGCTTAA
GGTAGACGGGGCTTCTTTCGAACCAGTGCCTCCTTACACGCTGTCAGGAG
GGACTGGGAGCGGTTTGGCCTATCGTATGTGCCTGTGA

protein sequence of rna7018

>rna7018-protein ID=rna7018-protein|Name=rna7018|organism=Nannochloropsis gaditana|type=polypeptide|length=577bp
MLQTTYSFRLLAWFFGSGAGHSSPLSSALITTSLSNIEASSYAPLSLPKP
AQENLPEPFHKQYGWLIAEQDRALHEGSQGSGAKPNNRFSTCWRQAMRLL
ASSCKDMDMPTKQRIALHLASCHLEEGGRQPVRCPEREKDVRNCLKRVQG
DAAWSTYTDLFLFADSYCYSLQTDAWQTQTELLINKLGQSSLQAVTLLGE
SAHVQDTLLKNQQESTLFQKDLADSQHQLHAGLEASTIQFSRLTDEVETG
FGAIGEQYQALLDMQESNIQRQKELLAGLQRANEEVRDFTMRIEEEFVKE
SQRFNLVKQVLGQACIILDVALYGGRLASMAVCVGACWILAPATTEYYAS
KCSAVAILLTTLVSMVHSVVVAARYILLPSLLSSKVLVILDTLFDGGSGG
IRILHSLAVVGVLLSLWRRIRRPSRTMWQIITGRNIEGSKSSKYGDASEN
TCNDRRLGDTEEMRLRAVLQKVVHGGTGTQVKSGVRRKCEGVEEIGRAIS
LSAGSYTQPLDAASSSYSGLVTPLHSVCSSEDGKFTPQRRSARLQSRTSF
SFDSSGKPCSRLLMNRGILETLSESSE

mRNA from alignment at CM002470.1:253595..255328+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7018 ID=rna7018|Name=rna7018|organism=Nannochloropsis gaditana|type=mRNA|length=1734bp|location=Sequence derived from alignment at CM002470.1:253595..255328+ (Nannochloropsis gaditana)
ATGCTGCAGACGACATACTCCTTCCGTCTCCTAGCGTGGTTTTTTGGTTC
AGGGGCAGGCCATTCCAGCCCTCTTTCCAGCGCATTGATCACTACATCTT
TATCTAATATCGAGGCAAGCAGTTATGCGCCGCTTTCGTTACCGAAACCA
GCACAAGAAAACCTACCAGAGCCCTTTCATAAGCAGTACGGTTGGCTCAT
TGCAGAACAAGACCGTGCTTTGCACGAGGGGAGCCAAGGAAGTGGAGCCA
AGCCGAACAACCGGTTCAGCACCTGCTGGCGTCAAGCAATGCGTCTTCTA
GCTTCGTCGTGTAAGGATATGGATATGCCGACTAAACAAAGAATCGCATT
ACATCTGGCTAGCTGCCAtctcgaggaggggggccgcCAGCCCGTGCGAT
GTccagagagggagaaagacgtgCGAAACTGTCTAAAAAGAGTGCAAGGA
GATGCTGCATGGTCAACGTACACCGATCTGTTCCTATTTGCGGACAGTTA
TTGCTACAGCCTGCAAACAGATGCATGGCAGACACAGACTGAACTTCTCA
TCAACAAGCTGGGACAAAGCAGTCTGCAGGCGGTGACTCTTCTGGGGGAA
TCGGCACATGTGCAAGACACACTCTTAAAGAACCAACAGGAGTCGACGCT
TTTCCAGAAGGACCTAGCAGACTCCCAGCATCAATTGCATGCAGGTCTGG
AAGCGTCGACGATACAGTTTAGCCGTCTTACCGATGAAGTTGAAACAGGC
TTCGGAGCCATTGGGGAGCAGTATCAGGCTCTTCTAGACATGCAAGAGTC
TAATATACAGCGACAAAAGGAACTTTTGGCTGGATTACAACGAGCCAACG
AAGAAGTCCGCGATTTCACCATGCGTATAGAGGAAGAGTTCGTGAAGGAA
TCCCAGCGCTTTAACTTAGTCAAACAGGTATTGGGGCAAGCTTGTATTAT
CCTGGATGTTGCTTTATATGGTGGGCGACTGGCTTCAATGGCAGTGTGTG
TGGGTGCATGTTGGATACTCGCACCTGCCACCACGGAGTATTATGCAAGT
AAGTGCTCTGCCGTGGCAATTTTACTGACCACCTTGGTAAGTATGGTCCA
CAGCGTAGTTGTAGCTGCGCGGTACATTCTACTGCCAAGCTTGCTTTCAT
CAAAAGTGCTTGTCATTTTGGACACGCTTTTCGACGGCGGTAGCGGAGGG
ATTCGCATCCTGCACTCCCTAGCCGTTGTCGGcgttcttctttccctctg
gCGACGAATAAGGAGGCCATCGAGGACCATGTGGCAGATCATCACAGGTA
GAAACATTGAAGGATCAAAGAGTAGTAAGTACGGCGACGCGAGTGAGAAC
ACTTGTAATGATAGGCGATTAGGCGATACAGAAGAGATGAGGCTGCGCGC
TGTTTTGCAGAAAGTTGTGCATGGAGGAACCGGAACACAAGTAAAAAGTG
GTGTTAGAAGAAAATGTGAAGGTGTTGAGGAAATAGGAAGAGCCATTTCA
CTGTCGGCAGGCTCATACACTCAGCCACTGGATGCGGCATCTTCGTCTTA
CTCAGGCCTAGTCACTCCTCTTCACAGCGTTTGTAGCAGCGAAGATGGTA
AATTTACTCCCCAGCGACGTTCCGCACGTCTACAGTCCCGAACGTCTTTC
AGTTTCGACAGCTCTGGAAAGCCTTGTAGTAGATTATTGATGAATCGAGG
AATCCTTGAGACTTTGTCCGAGAGCAGTGAATAG

Coding sequence (CDS) from alignment at CM002470.1:253595..255328+

>rna7018 ID=rna7018|Name=rna7018|organism=Nannochloropsis gaditana|type=CDS|length=1734bp|location=Sequence derived from alignment at CM002470.1:253595..255328+ (Nannochloropsis gaditana)
ATGCTGCAGACGACATACTCCTTCCGTCTCCTAGCGTGGTTTTTTGGTTC
AGGGGCAGGCCATTCCAGCCCTCTTTCCAGCGCATTGATCACTACATCTT
TATCTAATATCGAGGCAAGCAGTTATGCGCCGCTTTCGTTACCGAAACCA
GCACAAGAAAACCTACCAGAGCCCTTTCATAAGCAGTACGGTTGGCTCAT
TGCAGAACAAGACCGTGCTTTGCACGAGGGGAGCCAAGGAAGTGGAGCCA
AGCCGAACAACCGGTTCAGCACCTGCTGGCGTCAAGCAATGCGTCTTCTA
GCTTCGTCGTGTAAGGATATGGATATGCCGACTAAACAAAGAATCGCATT
ACATCTGGCTAGCTGCCAtctcgaggaggggggccgcCAGCCCGTGCGAT
GTccagagagggagaaagacgtgCGAAACTGTCTAAAAAGAGTGCAAGGA
GATGCTGCATGGTCAACGTACACCGATCTGTTCCTATTTGCGGACAGTTA
TTGCTACAGCCTGCAAACAGATGCATGGCAGACACAGACTGAACTTCTCA
TCAACAAGCTGGGACAAAGCAGTCTGCAGGCGGTGACTCTTCTGGGGGAA
TCGGCACATGTGCAAGACACACTCTTAAAGAACCAACAGGAGTCGACGCT
TTTCCAGAAGGACCTAGCAGACTCCCAGCATCAATTGCATGCAGGTCTGG
AAGCGTCGACGATACAGTTTAGCCGTCTTACCGATGAAGTTGAAACAGGC
TTCGGAGCCATTGGGGAGCAGTATCAGGCTCTTCTAGACATGCAAGAGTC
TAATATACAGCGACAAAAGGAACTTTTGGCTGGATTACAACGAGCCAACG
AAGAAGTCCGCGATTTCACCATGCGTATAGAGGAAGAGTTCGTGAAGGAA
TCCCAGCGCTTTAACTTAGTCAAACAGGTATTGGGGCAAGCTTGTATTAT
CCTGGATGTTGCTTTATATGGTGGGCGACTGGCTTCAATGGCAGTGTGTG
TGGGTGCATGTTGGATACTCGCACCTGCCACCACGGAGTATTATGCAAGT
AAGTGCTCTGCCGTGGCAATTTTACTGACCACCTTGGTAAGTATGGTCCA
CAGCGTAGTTGTAGCTGCGCGGTACATTCTACTGCCAAGCTTGCTTTCAT
CAAAAGTGCTTGTCATTTTGGACACGCTTTTCGACGGCGGTAGCGGAGGG
ATTCGCATCCTGCACTCCCTAGCCGTTGTCGGcgttcttctttccctctg
gCGACGAATAAGGAGGCCATCGAGGACCATGTGGCAGATCATCACAGGTA
GAAACATTGAAGGATCAAAGAGTAGTAAGTACGGCGACGCGAGTGAGAAC
ACTTGTAATGATAGGCGATTAGGCGATACAGAAGAGATGAGGCTGCGCGC
TGTTTTGCAGAAAGTTGTGCATGGAGGAACCGGAACACAAGTAAAAAGTG
GTGTTAGAAGAAAATGTGAAGGTGTTGAGGAAATAGGAAGAGCCATTTCA
CTGTCGGCAGGCTCATACACTCAGCCACTGGATGCGGCATCTTCGTCTTA
CTCAGGCCTAGTCACTCCTCTTCACAGCGTTTGTAGCAGCGAAGATGGTA
AATTTACTCCCCAGCGACGTTCCGCACGTCTACAGTCCCGAACGTCTTTC
AGTTTCGACAGCTCTGGAAAGCCTTGTAGTAGATTATTGATGAATCGAGG
AATCCTTGAGACTTTGTCCGAGAGCAGTGAATAG

Synonyms

Publications