rna7009, rna7009 (mRNA) Nannochloropsis gaditana

Overview
Namerna7009
Unique Namerna7009
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1030
Alignment locationCM002470.1:228570..230730 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100030g30.4163.mrna
Orig protein idgnl|cribi|Naga_100030g30.4163
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:228570..230730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g30gene6775Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23666.1cds6992Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7009rna7009-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7009 ID=rna7009|Name=rna7009|organism=Nannochloropsis gaditana|type=mRNA|length=1030bp
CTCAGGTACCCATGTCCGCATCATCAAGAGGGTATTTGGCCGCTTTCCTA
TCCCCAAGAACGTTATTGTTCTGCATTTTTCAGTGCTTCACATTGGTCTA
TGGCTGCCTGCCGCCGGGTGGAGTGAATTCGGGTGTGACCCAGGCCCAAG
GGACTTACGTCTGCATTGTGTTCTCGGCGCCCGCTTGGCAAGAGGGGACA
AGCAATTTTTCGCGCGTAGCATTTACTCCAACCGTGGATAGATTTACACG
TCTCCAATTCTCCGATACTTTCTCCAATCTTACCTCTCAAGGCGTCGCAA
ATTTGTATGGGCCAAACGTAGCGGTGCATGTTGAGAGCATGGGCGTCGCC
TCGTTTCAGAAACTCTACCGGCAGGAAGACAGTCTAGGACGGACATTCTC
TGTTCTCACCGCAATCATAAACCTGGATAGAGGAGTGGTGACTGGCATCA
CTTTTGATAATGGTTGTCCCCTTTGCGACAATAGCGATAGGTGTGTAGAG
AATACGTACGACTTCACGGGCGAGCGCTACACGGGTGTTGGCGCTACGTC
GGACTGTTTTTTGACGGACGCCGAATGCGCCCTTAACGCTCAGGCAGATC
GAAATGCCTGCCAATTGAGCTTGTACATAACGTGGACCGGCACGGACGCG
CAGGGTAATTTTTTGACGAGCTCCAGTCGCCGCTTTTCCCTCCTCAGCGC
TTTCTCAGTCAAATCGTTCGTGAACGGGCTGGTCAAGGGCGTGCAGGGCG
TATCGATGCGCGAAGAGAAATGAGTTAAAAAGAAGACATGGAGCTTCTCG
CTCTAAGAGCAGTCTTTTCCCAAGAAGAGGCGACCATCAGGATTTTACAT
CAATGCACGGCGTCCCGTTACTGTTTTCGGAAAACAATATTCAATGCAAT
GCCACACACCTCAGTCTTCCGGTGTGCTTTGATATTTCTTCTCATATACA
CTGACATGCATACCACACACCGGTGTGGATTTAATTTATATGCTGCTCCC
GCTACCTCTCCCCTGGCTCTGCTTCTTTCT
back to top

protein sequence of rna7009

>rna7009-protein ID=rna7009-protein|Name=rna7009|organism=Nannochloropsis gaditana|type=polypeptide|length=574bp
MRAREGRWLERNGSPGHSVLGRLVSLKLACVFLMIHVLIAHLRTAAQTHP
EYAHTNLYEALGLNPNATPADVKKAYRTLALKNHPDKVQVDDKEAAASVF
AEIAEAYEILSDPVRRQQYDLARRQVEEASNLGKQGRDHHHSDRGFGYED
YWDEDVEAWSAQGRRDAYFAHQDHGRDEKWIFTDPFQLFESFFADTREWG
DLRWGWDHEAAGYAGYPSGNVVSDWESDVYEDIEWHSFGGQDFIRIERVY
GDGRIEMETKEAPSSSSGRARVDLGGRKKTGEWAHEERGGHKGDSFERFH
RPFSSSWGTSTMGVARQALRTGERLKVGDQLLSPEGTHVCFLDHKYEKLV
VAENLEDGDILWESNGRGEGWETWEEGDSLKEGARPHSLHESHLSAVVSR
QGRVEIWREERVGSIGGRKELVWQSTKDAGGPSVDEDLSSLEYVLTLSDV
DGNLALYCVAKEGRALGDEGGDEECVWASRGCPGMGRTARQALEEFGRQV
VFPVFRLGVAGLTSLLKQLRAFVRDHGFPNLRRGWMYVYRLTKKAASKLR
HAVAERRRVERKKQSQGRGSGSSI
back to top

mRNA from alignment at CM002470.1:228570..230730-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7009 ID=rna7009|Name=rna7009|organism=Nannochloropsis gaditana|type=mRNA|length=2161bp|location=Sequence derived from alignment at CM002470.1:228570..230730- (Nannochloropsis gaditana)
GCGACAATAGATGAGCGCGGCCGCCATCACTTCCTCCACTCTCCGCCTCG
AGGCGTCGGTGAGATATTTTTGCTCGTATAGACGCCAGTACACGGCGATG
CAGCATCCCCTGTATTTCAATGAGGTTTTTGCGAAGTTCTGAATTCCAAG
GATCACTAGCCGGATTGTCTTTTACAGAGGACGATTGCGCAGGGAGGCCT
CATGGGCCGGTCGGTCGGGTTGCGGATGTGAGGCCCGGGCACTTTCACCT
CCCGGGGAGCTCATGCATCCACGCCGATCCCACCCACCCGCTCACATCAA
GGCTTTTCCACTCACAGGCCGCCCAGTAGATCAGACGCCTTAATGAGAGC
AAGGGAGGGGCGTTGGCTTGAGAGAAACGGATCACCTGGACACTCAGTAC
TGGGACGACTGGTGTCGCTCAAGCTGGCATGTGTTTTCCTCATGATTCAT
GTCCTGATAGCTCATCTACGTACCGCAGCACAAACGCATCCTGAGTATGC
GCATACAAATCTATACGAAGCACTGGGACTAAATCCGAATGCCACGCCCG
CAGATGTTAAGAAGGCATATCGGACACTGGCCCTTAAAAACCATCCTGAT
AAAGTCCAGGTGGATGACAAAGAAGCTGCTGCTAGCGTGTTCGCAGAAAT
CGCAGAAGCGTATGAAATCCTATCTGATCCAGTTCGACGCCAGCAATACG
ATTTAGCACGGAGGCAGGTGGAAGAAGCGAGTAATTTGGGGAAGCAAGGC
CGCGACCATCACCATTCCGATCGTGGATTCGGCTATGAAGACTATTGGGA
CGAGGACGTGGAGGCATGGAGCGCGCAAGGTCGGAGAGATGCTTACTTCG
CTCACCAGGATCATGGAAGAGATGAAAAATGGATCTTCACAGATCCGTTT
CAACTGTTTGAAAGTTTTTTTGCCGACACCCGGGAATGGGGCGATCTGCG
ATGGGGCTGGGACCACGAGGCAGCAGGCTACGCTGGCTACCCATCTGGCA
ATGTGGTCAGCGATTGGGAAAGCGATGTGTACGAGGACATAGAATGGCAC
TCTTTCGGTGGGCAGGACTTTATACGCATAGAAAGGGTATACGGAGACGG
CCGGATTGAAATGGAAACGAAAGAGGCGCCCTCTTCGTCGTCTGGGCGAG
CACGTGTTGACCTGGGAGGGCGCAAGAAGACGGGGGAGTGGGCCCACGAA
GAAAGGGGAGGGCACAAAGGAGACTCGTTTGAGCGTTTTCATCGACCATT
CTCAAGCTCGTGGGGTACAAGCACCATGGGTGTTGCTAGGCAAGCATTGC
GGACGGGAGAAAGGCTGAAGGTGGGGGATCAACTCTTGTCCCCCGAGGGA
ACTCATGTGTGCTTTCTAGACCACAAATACGAAAAATTGGTTGTTGCAGA
GAATTTGGAGGATGGGGACATCCTATGGGAGTCAAACGGAAGGGGAGAAG
GATGGGAAACGTGGGAAGAGGGGGACAGCCTCAAAGAGGGCGCAAGGCCG
CACTCTCTCCACGAAAGCCATCTGTCAGCAGTCGTGTCGCGACAAGGTCG
GGTGGAGATATGGAGGGAGGAGCGAGTGGGGTCGATAGGCGGTAGGAAGG
AGCTGGTTTGGCAATCCACTAAAGATGCGGGCGGTCCAAGCGTCGACGAG
GACCTGAGCAGCCTCGAGTACGTTCTCACCCTTTCGGATGTGGACGGAAA
CCTGGCGTTGTACTGCGTCGCGAAGGAAGGGAGGGCTTTGGGAGACGAAG
GTGGGGATGAGGAATGTGTGTGGGCTAGCCGGGGTTGTCCTGGGATGGGG
CGTACTGCTCGCCAGGCGCTGGAGGAGTTTGGCCGTCAGGTCGTCTTCCC
CGTCTTCCGGCTGGGTGTAGCGGGGCTCACTTCCCTTTTAAAGCAGCTGC
GGGCCTTCGTGAGGGATCATGGATTTCCCAATTTGAGAAGGGGGTGGATG
TATGTATATAGGCTGACGAAAAAGGCAGCAAGCAAGCTCAGGCACGCTGT
TGCGGAGAGGAGGCGGGTGGAGAGAAAGAAGCAGAGCCAGGGGAGAGGTA
GCGGGAGCAGCATATAAATTAAATCCACACCGGTGTGTGGTATGCATGTC
AGTGTATATGAGAAGAAATATCAAAGCACACCGGAAGACTGAGGTGTGTG
GCATTGCATTG
back to top

Coding sequence (CDS) from alignment at CM002470.1:228570..230730-

>rna7009 ID=rna7009|Name=rna7009|organism=Nannochloropsis gaditana|type=CDS|length=1725bp|location=Sequence derived from alignment at CM002470.1:228570..230730- (Nannochloropsis gaditana)
ATGAGAGCAAGGGAGGGGCGTTGGCTTGAGAGAAACGGATCACCTGGACA
CTCAGTACTGGGACGACTGGTGTCGCTCAAGCTGGCATGTGTTTTCCTCA
TGATTCATGTCCTGATAGCTCATCTACGTACCGCAGCACAAACGCATCCT
GAGTATGCGCATACAAATCTATACGAAGCACTGGGACTAAATCCGAATGC
CACGCCCGCAGATGTTAAGAAGGCATATCGGACACTGGCCCTTAAAAACC
ATCCTGATAAAGTCCAGGTGGATGACAAAGAAGCTGCTGCTAGCGTGTTC
GCAGAAATCGCAGAAGCGTATGAAATCCTATCTGATCCAGTTCGACGCCA
GCAATACGATTTAGCACGGAGGCAGGTGGAAGAAGCGAGTAATTTGGGGA
AGCAAGGCCGCGACCATCACCATTCCGATCGTGGATTCGGCTATGAAGAC
TATTGGGACGAGGACGTGGAGGCATGGAGCGCGCAAGGTCGGAGAGATGC
TTACTTCGCTCACCAGGATCATGGAAGAGATGAAAAATGGATCTTCACAG
ATCCGTTTCAACTGTTTGAAAGTTTTTTTGCCGACACCCGGGAATGGGGC
GATCTGCGATGGGGCTGGGACCACGAGGCAGCAGGCTACGCTGGCTACCC
ATCTGGCAATGTGGTCAGCGATTGGGAAAGCGATGTGTACGAGGACATAG
AATGGCACTCTTTCGGTGGGCAGGACTTTATACGCATAGAAAGGGTATAC
GGAGACGGCCGGATTGAAATGGAAACGAAAGAGGCGCCCTCTTCGTCGTC
TGGGCGAGCACGTGTTGACCTGGGAGGGCGCAAGAAGACGGGGGAGTGGG
CCCACGAAGAAAGGGGAGGGCACAAAGGAGACTCGTTTGAGCGTTTTCAT
CGACCATTCTCAAGCTCGTGGGGTACAAGCACCATGGGTGTTGCTAGGCA
AGCATTGCGGACGGGAGAAAGGCTGAAGGTGGGGGATCAACTCTTGTCCC
CCGAGGGAACTCATGTGTGCTTTCTAGACCACAAATACGAAAAATTGGTT
GTTGCAGAGAATTTGGAGGATGGGGACATCCTATGGGAGTCAAACGGAAG
GGGAGAAGGATGGGAAACGTGGGAAGAGGGGGACAGCCTCAAAGAGGGCG
CAAGGCCGCACTCTCTCCACGAAAGCCATCTGTCAGCAGTCGTGTCGCGA
CAAGGTCGGGTGGAGATATGGAGGGAGGAGCGAGTGGGGTCGATAGGCGG
TAGGAAGGAGCTGGTTTGGCAATCCACTAAAGATGCGGGCGGTCCAAGCG
TCGACGAGGACCTGAGCAGCCTCGAGTACGTTCTCACCCTTTCGGATGTG
GACGGAAACCTGGCGTTGTACTGCGTCGCGAAGGAAGGGAGGGCTTTGGG
AGACGAAGGTGGGGATGAGGAATGTGTGTGGGCTAGCCGGGGTTGTCCTG
GGATGGGGCGTACTGCTCGCCAGGCGCTGGAGGAGTTTGGCCGTCAGGTC
GTCTTCCCCGTCTTCCGGCTGGGTGTAGCGGGGCTCACTTCCCTTTTAAA
GCAGCTGCGGGCCTTCGTGAGGGATCATGGATTTCCCAATTTGAGAAGGG
GGTGGATGTATGTATATAGGCTGACGAAAAAGGCAGCAAGCAAGCTCAGG
CACGCTGTTGCGGAGAGGAGGCGGGTGGAGAGAAAGAAGCAGAGCCAGGG
GAGAGGTAGCGGGAGCAGCATATAA
back to top
Synonyms
Publications