rna7007, rna7007 (mRNA) Nannochloropsis gaditana

Overview
Namerna7007
Unique Namerna7007
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length959
Alignment locationCM002470.1:225188..227397 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100030g28.4182.mrna
Orig protein idgnl|cribi|Naga_100030g28.4182
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:225188..227397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g28gene6773Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23685.1cds6990Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7007rna7007-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7007 ID=rna7007|Name=rna7007|organism=Nannochloropsis gaditana|type=mRNA|length=959bp
AGGCTACACACGCCAGCTCTTCATGGGCCATCATCTTTGTTTCTATTTCC
CAATTCATAGTGTTCGAACAGGAGTGTGTGCACCGTACAGGATCTGGATC
CGAAATTTTGTTCGCTTGGTTTGCACGTGGCCGGACTCTTGTGTTGAACC
TCCTTGCCAACCTTAGAATTTCCCTTTGTCGCACGTTCCCTACACCTGGC
TTCCTATCCAACCGACGAACGCATCGTGGAGACACGCGCACAATGTTCTT
TAACTCCTGTCATGCTTTCTTACTCCACTATCACATCTGTCAATAGGTTT
GGTTCTGCTTCCACACATCTCGTTCCCTCTGAACCAGTCAAACCGAATCA
CTCATGGATGCCACCAGTCTCCAATACGCAACAGTATGGGCTGTGCCTGC
CGTCCTAGCAAGTTTGACGCTATTGATCGCACTGGATATTGCCCTTAAGG
GTGTGCACACGTTAACGCTTCGCACCCGCTCCTTGCCAGGCCATATCTTC
CTGGCTCACATTGACAACCTCATCGAGAGGCTTTTCGGCGGCAAGCAACT
CTCGTTTTCCATCACAAGTGTGATGCTCGGCGCCGTGTTAATTGCCATCA
TGTCATGCAGTATCATTTTACATAAATTGGTCGTTATGAAGGCGGAAGAG
ATGGAAGAATTGCGTGAAGAGAAGCGCCGCCGTTAGAAATGTGACAAGTG
GCTTGGCATCCGTCTTCCTTTGAGGCAATGCACAAAAAATAGGTAGGACC
TCTGATTTTTTTGCAAGAAAAGGGTAAAAGGGGTAATAAGGTGCAATGCT
AAATAATTGACTTCAAGTGGTGCGGGCAAAAAGGAAAGTTTGCTAGGGGC
ACGAGAGTGAGAAGAATATTTTCCCTAAACTTGCGCCTCGATAAATCACG
TAACGTTCGATGGGGCAAGGAAAATCACCGCCGAAGTGTAAACTATGAGG
TGTCTGCTT
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protein sequence of rna7007

>rna7007-protein ID=rna7007-protein|Name=rna7007|organism=Nannochloropsis gaditana|type=polypeptide|length=634bp
MQISAVVDYDVEAVKAQVDTILASQGVEDARKHFEETLSSWADEYSRILE
EASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVI
GEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFLE
ALKAKGGPGTDGIETVAQLKAMLGIPEEEEQKHEIKGVDEVSAESGPGDP
SSDASSDPVSGSIIRGMEKPASGNNLPDNAVNDAPVFSEPSVLESSPDGK
RETLTLGSQMQMVPAQSTAPELVDASAAKIAPAQPAETEPPPLLFSTEAL
LNMDDAYGAGLEEETLGAVKVLLGDPAVLDVVEGQWLVQAMKQQLASTIL
AGLEAKHTEARERLALRHAQLQASIPSVSLSSQLEQERQALATACERERA
QLRTQLSAEFWQVLEAQQSILGEGAGGAGLPGLEITRDRTAIAKQQKVLR
VVTANMQLYHFHRKRQRMTEDLAHQTDLLHELQCAASGVESESGKSTATR
AETSKPSSSSAPDAPSPDSLPSGERSNGSSRSKRGTSSGTRWEPVASVEK
TVEEGKGGQSEGGRPRKQMRARGDRGHSPHVESANVGRSPPRRSSRRGGH
GSAYRDGAESKEKATSAPSADNRAILRRMMEHFK
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mRNA from alignment at CM002470.1:225188..227397-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7007 ID=rna7007|Name=rna7007|organism=Nannochloropsis gaditana|type=mRNA|length=2210bp|location=Sequence derived from alignment at CM002470.1:225188..227397- (Nannochloropsis gaditana)
AAAGGATTTGCCGGTCCGCCAAAATGCCTGTTTCCGCGCAACAACAATGA
ACAAACCTCTTCTGTGGAGCTACATGGGTTAGGGTCAGGGCAATTTTCTC
ACGTGAAAGATACAAAATGACACAGGGTCCAGCCAGTTTTGTAGTGCGAT
TTTCCGCCCCGCGCTTTTTCACCATACATCACACACTTGTTCCGGAAAAC
GCCCCCTTCGACGCATGCAAATCTCTGCCGTTGTTGACTATGACGTTGAA
GCTGTCAAGGCACAGGTAGACACCATTTTGGCGTCACAAGGGGTGGAGGA
TGCACGCAAACATTTCGAAGAAACGCTTTCCTCTTGGGCTGACGAGTACT
CCCGTATATTAGAGGAAGCCAGCCAACCTCTTTCCGTTGCGGATAGACAA
CCCTATGAAGAAAGTCTAGTTGACCTTTGGCTTGCATACGCTGCCTTCGA
AAGGCGACTGCGCCAATGGAAACAAGCGGTAAAGGTGTTTGAAAGCGCCA
CAACGGACGTTATCGGAGAGAAGACATCCCGGCTGTGGGTTGAATATGGG
CGCTTCTGTCGGGAGCGTGGTAAATTTGCCAACGCGCAAAAAGTGTACCT
GCGGGCGGTGGAAGTCCTAGATACCAAGGCCGAGCGAGACATGATCTGGT
CTGAATTCCTAGAGGCACTCAAGGCCAAGGGCGGGCCTGGAACAGATGGC
ATTGAGACGGTGGCCCAGCTCAAAGCTATGCTTGGCATCCCTGAAGAGGA
AGAGCAAAAACACGAGATAAAAGGGGTTGATGAAGTCTCTGCAGAATCAG
GGCCGGGAGATCCGAGCAGCGATGCTTCATCAGATCCTGTCTCTGGATCG
ATAATCAGGGGGATGGAGAAGCCAGCATCGGGGAACAATTTACCAGACAA
CGCCGTTAATGATGCACCAGTCTTCTCGGAGCCTTCAGTTCTTGAGTCGT
CACCAGATGGAAAAAGAGAAACGCTCACATTGGGCTCTCAGATGCAAATG
GTCCCTGCGCAGTCTACAGCACCCGAGCTCGTAGATGCCTCAGCTGCCAA
AATAGCACCAGCGCAACCTGCAGAAACGGAGCCACCACCCCTGTTGTTTT
CCACCGAGGCACTGCTTAATATGGATGACGCGTACGGTGCAGGTTTGGAG
GAGGAAACTCTTGGGGCCGTGAAGGTTCTTTTGGGGGACCCGGCCGTGCT
GGACGTGGTCGAGGGGCAATGGCTGGTGCAGGCCATGAAGCAGCAGCTGG
CAAGCACTATTTTGGCGGGGCTGGAGGCCAAGCATACCGAGGCAAGAGAA
CGCCTGGCCCTTCGTCATGCGCAGCTGCAGGCAAGTATTCCCAGTGTTTC
TCTATCGTCTCAACTGGAGCAGGAGCGACAGGCATTGGCGACGGCATGCG
AACGAGAACGAGCACAACTCAGAACACAGCTCTCGGCCGAGTTCTGGCAA
GTGCTTGAGGCCCAGCAATCCATCCTAGGGGAGGGTGCTGGGGGCGCGGG
GCTGCCAGGGTTGGAGATAACGCGTGACCGAACAGCTATAGCAAAGCAGC
AAAAAGTTCTCCGCGTGGTCACGGCCAACATGCAGCTCTACCACTTCCAT
AGGAAGCGGCAACGCATGACAGAAGACCTGGCGCACCAAACTGACCTTTT
GCATGAGCTGCAATGCGCTGCAAGCGGTGTAGAAAGTGAGAGCGGTAAAT
CCACAGCCACCAGAGCAGAGACGTCTAAACCTTCATCCTCGTCGGCGCCT
GATGCCCCGTCGCCGGATTCCCTACCTTCCGGCGAGCGTAGCAATGGAAG
CAGCCGCAGCAAGAGGGGCACGTCCTCGGGCACAAGGTGGGAACCCGTGG
CCTCAGTGGAAAAAACGGTGGAGGAGGGGAAAGGCGGGCAAAGTGAGGGC
GGCAGACCCCGGAAGCAGATGAGGGCGCGAGGAGACCGAGGGCATTCACC
GCACGTTGAGTCGGCCAACGTTGGACGATCGCCGCCGCGGCGAAGCAGTC
GTAGAGGGGGGCATGGCAGCGCTTATAGGGATGGCGCTGAGAGTAAGGAG
AAAGCCACGTCAGCTCCGAGTGCCGACAATAGAGCCATCCTTCGTAGAAT
GATGGAACATTTCAAGTAATTGACGAAGCAAATTTATAAAGCAGACACCT
CATAGTTTACACTTCGGCGGTGATTTTCCTTGCCCCATCGAACGTTACGT
GATTTATCGA
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Coding sequence (CDS) from alignment at CM002470.1:225188..227397-

>rna7007 ID=rna7007|Name=rna7007|organism=Nannochloropsis gaditana|type=CDS|length=1905bp|location=Sequence derived from alignment at CM002470.1:225188..227397- (Nannochloropsis gaditana)
ATGCAAATCTCTGCCGTTGTTGACTATGACGTTGAAGCTGTCAAGGCACA
GGTAGACACCATTTTGGCGTCACAAGGGGTGGAGGATGCACGCAAACATT
TCGAAGAAACGCTTTCCTCTTGGGCTGACGAGTACTCCCGTATATTAGAG
GAAGCCAGCCAACCTCTTTCCGTTGCGGATAGACAACCCTATGAAGAAAG
TCTAGTTGACCTTTGGCTTGCATACGCTGCCTTCGAAAGGCGACTGCGCC
AATGGAAACAAGCGGTAAAGGTGTTTGAAAGCGCCACAACGGACGTTATC
GGAGAGAAGACATCCCGGCTGTGGGTTGAATATGGGCGCTTCTGTCGGGA
GCGTGGTAAATTTGCCAACGCGCAAAAAGTGTACCTGCGGGCGGTGGAAG
TCCTAGATACCAAGGCCGAGCGAGACATGATCTGGTCTGAATTCCTAGAG
GCACTCAAGGCCAAGGGCGGGCCTGGAACAGATGGCATTGAGACGGTGGC
CCAGCTCAAAGCTATGCTTGGCATCCCTGAAGAGGAAGAGCAAAAACACG
AGATAAAAGGGGTTGATGAAGTCTCTGCAGAATCAGGGCCGGGAGATCCG
AGCAGCGATGCTTCATCAGATCCTGTCTCTGGATCGATAATCAGGGGGAT
GGAGAAGCCAGCATCGGGGAACAATTTACCAGACAACGCCGTTAATGATG
CACCAGTCTTCTCGGAGCCTTCAGTTCTTGAGTCGTCACCAGATGGAAAA
AGAGAAACGCTCACATTGGGCTCTCAGATGCAAATGGTCCCTGCGCAGTC
TACAGCACCCGAGCTCGTAGATGCCTCAGCTGCCAAAATAGCACCAGCGC
AACCTGCAGAAACGGAGCCACCACCCCTGTTGTTTTCCACCGAGGCACTG
CTTAATATGGATGACGCGTACGGTGCAGGTTTGGAGGAGGAAACTCTTGG
GGCCGTGAAGGTTCTTTTGGGGGACCCGGCCGTGCTGGACGTGGTCGAGG
GGCAATGGCTGGTGCAGGCCATGAAGCAGCAGCTGGCAAGCACTATTTTG
GCGGGGCTGGAGGCCAAGCATACCGAGGCAAGAGAACGCCTGGCCCTTCG
TCATGCGCAGCTGCAGGCAAGTATTCCCAGTGTTTCTCTATCGTCTCAAC
TGGAGCAGGAGCGACAGGCATTGGCGACGGCATGCGAACGAGAACGAGCA
CAACTCAGAACACAGCTCTCGGCCGAGTTCTGGCAAGTGCTTGAGGCCCA
GCAATCCATCCTAGGGGAGGGTGCTGGGGGCGCGGGGCTGCCAGGGTTGG
AGATAACGCGTGACCGAACAGCTATAGCAAAGCAGCAAAAAGTTCTCCGC
GTGGTCACGGCCAACATGCAGCTCTACCACTTCCATAGGAAGCGGCAACG
CATGACAGAAGACCTGGCGCACCAAACTGACCTTTTGCATGAGCTGCAAT
GCGCTGCAAGCGGTGTAGAAAGTGAGAGCGGTAAATCCACAGCCACCAGA
GCAGAGACGTCTAAACCTTCATCCTCGTCGGCGCCTGATGCCCCGTCGCC
GGATTCCCTACCTTCCGGCGAGCGTAGCAATGGAAGCAGCCGCAGCAAGA
GGGGCACGTCCTCGGGCACAAGGTGGGAACCCGTGGCCTCAGTGGAAAAA
ACGGTGGAGGAGGGGAAAGGCGGGCAAAGTGAGGGCGGCAGACCCCGGAA
GCAGATGAGGGCGCGAGGAGACCGAGGGCATTCACCGCACGTTGAGTCGG
CCAACGTTGGACGATCGCCGCCGCGGCGAAGCAGTCGTAGAGGGGGGCAT
GGCAGCGCTTATAGGGATGGCGCTGAGAGTAAGGAGAAAGCCACGTCAGC
TCCGAGTGCCGACAATAGAGCCATCCTTCGTAGAATGATGGAACATTTCA
AGTAA
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Synonyms
Publications