EWM23685.1, cds6990 (CDS) Nannochloropsis gaditana

Overview
NameEWM23685.1
Unique Namecds6990
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:225279..227183 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23685.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100030g28.4182.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:225279..227183 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013212Mad3/Bub1_I
IPR003107HAT
Homology
BLAST of EWM23685.1 vs. NCBI_GenBank
Match: gi|585104839|gb|EWM23685.1| (hypothetical protein Naga_100030g28 [Nannochloropsis gaditana])

HSP 1 Score: 1286.17 bits (3327), Expect = 0.000e+0
Identity = 634/634 (100.00%), Postives = 634/634 (100.00%), Query Frame = 0
Query:    1 MQISAVVDYDVEAVKAQVDTILASQGVEDARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFLEALKAKGGPGTDGIETVAQLKAMLGIPEEEEQKHEIKGVDEVSAESGPGDPSSDASSDPVSGSIIRGMEKPASGNNLPDNAVNDAPVFSEPSVLESSPDGKRETLTLGSQMQMVPAQSTAPELVDASAAKIAPAQPAETEPPPLLFSTEALLNMDDAYGAGLEEETLGAVKVLLGDPAVLDVVEGQWLVQAMKQQLASTILAGLEAKHTEARERLALRHAQLQASIPSVSLSSQLEQERQALATACERERAQLRTQLSAEFWQVLEAQQSILGEGAGGAGLPGLEITRDRTAIAKQQKVLRVVTANMQLYHFHRKRQRMTEDLAHQTDLLHELQCAASGVESESGKSTATRAETSKPSSSSAPDAPSPDSLPSGERSNGSSRSKRGTSSGTRWEPVASVEKTVEEGKGGQSEGGRPRKQMRARGDRGHSPHVESANVGRSPPRRSSRRGGHGSAYRDGAESKEKATSAPSADNRAILRRMMEHFK 634
            MQISAVVDYDVEAVKAQVDTILASQGVEDARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFLEALKAKGGPGTDGIETVAQLKAMLGIPEEEEQKHEIKGVDEVSAESGPGDPSSDASSDPVSGSIIRGMEKPASGNNLPDNAVNDAPVFSEPSVLESSPDGKRETLTLGSQMQMVPAQSTAPELVDASAAKIAPAQPAETEPPPLLFSTEALLNMDDAYGAGLEEETLGAVKVLLGDPAVLDVVEGQWLVQAMKQQLASTILAGLEAKHTEARERLALRHAQLQASIPSVSLSSQLEQERQALATACERERAQLRTQLSAEFWQVLEAQQSILGEGAGGAGLPGLEITRDRTAIAKQQKVLRVVTANMQLYHFHRKRQRMTEDLAHQTDLLHELQCAASGVESESGKSTATRAETSKPSSSSAPDAPSPDSLPSGERSNGSSRSKRGTSSGTRWEPVASVEKTVEEGKGGQSEGGRPRKQMRARGDRGHSPHVESANVGRSPPRRSSRRGGHGSAYRDGAESKEKATSAPSADNRAILRRMMEHFK
Sbjct:    1 MQISAVVDYDVEAVKAQVDTILASQGVEDARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFLEALKAKGGPGTDGIETVAQLKAMLGIPEEEEQKHEIKGVDEVSAESGPGDPSSDASSDPVSGSIIRGMEKPASGNNLPDNAVNDAPVFSEPSVLESSPDGKRETLTLGSQMQMVPAQSTAPELVDASAAKIAPAQPAETEPPPLLFSTEALLNMDDAYGAGLEEETLGAVKVLLGDPAVLDVVEGQWLVQAMKQQLASTILAGLEAKHTEARERLALRHAQLQASIPSVSLSSQLEQERQALATACERERAQLRTQLSAEFWQVLEAQQSILGEGAGGAGLPGLEITRDRTAIAKQQKVLRVVTANMQLYHFHRKRQRMTEDLAHQTDLLHELQCAASGVESESGKSTATRAETSKPSSSSAPDAPSPDSLPSGERSNGSSRSKRGTSSGTRWEPVASVEKTVEEGKGGQSEGGRPRKQMRARGDRGHSPHVESANVGRSPPRRSSRRGGHGSAYRDGAESKEKATSAPSADNRAILRRMMEHFK 634          
BLAST of EWM23685.1 vs. NCBI_GenBank
Match: gi|953493025|emb|CEG44971.1| (Tetratricopeptide repeat-containing domain [Plasmopara halstedii])

HSP 1 Score: 102.834 bits (255), Expect = 4.390e-19
Identity = 133/489 (27.20%), Postives = 209/489 (42.74%), Query Frame = 0
Query:    9 YDVEAVKAQVDTILASQG---VEDARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFLEALKAKGGPGTDGIETVAQLKAMLGIPEEEEQKHEIKGVDEVSAESGPGDPSSDASSDPVSGSIIRGMEKP-----------ASGN---NLPDNAVNDAPVF--------SEPSVLESSPDG--KRETLTLGSQMQMVPAQSTAPELVDASAAKIAPAQPAETEPPPLLFSTEALLNMDDAYGAGLEEETLGAVKVLLGDPAVLDVVEGQWLVQAMKQQLASTI-----LAGLEAKHTEARERLALRHAQLQA----SIPS--VSLSSQLEQERQALATACERERAQLRTQLSAEFWQVLEAQQSILGEGAGGAGLPGLEITRDRTAIAKQQKVLRVVTANMQLY 459
            +D   V AQ   ++ S     VEDARK  ++TLS W       ++  S    V      + ++V LW  YAA E  LRQ+KQA KVFE A T  +   +  LW++Y  FC ER +F+NA+KV++RA+E L  + E   IW+ F   +        DG  ++A L+  + +P+    K    G     A SGP    S  ++ PV+ S +    KP           A  N   + P +AV+ A  F        S PS L     G  KR+++ L         +S +     A    +    P       LLF + A    D      +  E L  +  +LGD AV + V    L    + +    +     L G++ K  E  E  A RH  L+     S P   ++L +Q  ++R+  +  C+  + Q     + +    L+AQQ  L        +P + +T D  AI  Q+ ++ ++    +L+
Sbjct:    8 WDASGVVAQAKALILSSNYIKVEDARKEVDDTLSRWVSS----VQAMSDDQGVGQG---KTAVVALWRQYAALEMELRQFKQATKVFERAVTCPVAGSSMALWLQYADFCVERKRFSNARKVFIRALEALPER-EHTAIWARFFGFVCTH----VDGTLSLATLQHQV-MPD----KFPNPGTSIAIAPSGP----SAYTTPPVAVSTLTNPLKPLPNTLQPLPLQAQANASTSQPVSAVDPAVAFIDTTGEVTSSPSPLAVDSVGLSKRKSVDLQIDSDAKRGKSNSASTATAYFVHLPLTLPFIPSCSRLLFDSVA----DGEAQKQIGNELLERLSDVLGDSAVFEGVRD--LRDNQRSRDREMLYRWQELVGMQMK--EGSELFA-RHMALEMQHGFSDPRGLIALKTQHLEQRREFSNRCQMSQQQFVDICALDRADALKAQQISLEN----MKIPEMTVTTDADAITLQRGIVGLILEAEKLW 462          
BLAST of EWM23685.1 vs. NCBI_GenBank
Match: gi|570978292|gb|ETP39552.1| (hypothetical protein F442_12984 [Phytophthora parasitica P10297])

HSP 1 Score: 96.6709 bits (239), Expect = 4.616e-17
Identity = 51/147 (34.69%), Postives = 84/147 (57.14%), Query Frame = 0
Query:    6 VVDYDVEAVKAQVDTILASQGVE---DARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFL 149
            +  ++   V A+   ++ S   E   DARK  ++TL+ W       ++  S P++VA       ++V LW  YAA E  LRQ+KQA KVFE A +  I   ++ LW++Y  FC +R KF+NA+K+++RA++ L  + E+  +W+ F 
Sbjct:    5 IATWEASGVVARAKALIHSSNYEKVADARKDVDDTLAKWVAS----IQTQSDPMNVARG---SAAIVALWRQYAALEMELRQFKQATKVFERAVSCPIAGSSTPLWLQYADFCVQRKKFSNARKIFVRALQTLPEQ-EQKAVWARFY 143          
BLAST of EWM23685.1 vs. NCBI_GenBank
Match: gi|567956094|gb|ETK81719.1| (hypothetical protein L915_12791 [Phytophthora parasitica] >gi|567984765|gb|ETL35122.1| hypothetical protein L916_12705 [Phytophthora parasitica] >gi|568014187|gb|ETL88364.1| hypothetical protein L917_12544 [Phytophthora parasitica] >gi|570946163|gb|ETP11420.1| hypothetical protein F441_13053 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 96.2857 bits (238), Expect = 4.906e-17
Identity = 51/147 (34.69%), Postives = 84/147 (57.14%), Query Frame = 0
Query:    6 VVDYDVEAVKAQVDTILASQGVE---DARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFL 149
            +  ++   V A+   ++ S   E   DARK  ++TL+ W       ++  S P++VA       ++V LW  YAA E  LRQ+KQA KVFE A +  I   ++ LW++Y  FC +R KF+NA+K+++RA++ L  + E+  +W+ F 
Sbjct:    5 IATWEASGVVARAKALIHSSNYEKVADARKDVDDTLAKWVAS----IQTQSDPMNVARG---SAAIVALWRQYAALEMELRQFKQATKVFERAVSCPIAGSSTPLWLQYADFCVQRKKFSNARKIFVRALQTLPEQ-EQKAVWARFY 143          
BLAST of EWM23685.1 vs. NCBI_GenBank
Match: gi|675170403|ref|XP_008894086.1| (hypothetical protein PPTG_03163 [Phytophthora parasitica INRA-310] >gi|568044398|gb|ETM41612.1| hypothetical protein L914_12622 [Phytophthora parasitica] >gi|568105441|gb|ETN20077.1| hypothetical protein PPTG_03163 [Phytophthora parasitica INRA-310])

HSP 1 Score: 96.2857 bits (238), Expect = 4.949e-17
Identity = 51/147 (34.69%), Postives = 84/147 (57.14%), Query Frame = 0
Query:    6 VVDYDVEAVKAQVDTILASQGVE---DARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFL 149
            +  ++   V A+   ++ S   E   DARK  ++TL+ W       ++  S P++VA       ++V LW  YAA E  LRQ+KQA KVFE A +  I   ++ LW++Y  FC +R KF+NA+K+++RA++ L  + E+  +W+ F 
Sbjct:    5 IATWEASGVVARAKALIHSSNYEKVADARKDVDDTLAKWVAS----IQTQSDPMNVARG---SAAIVALWRQYAALEMELRQFKQATKVFERAVSCPIAGSSTPLWLQYADFCVQRKKFSNARKIFVRALQTLPEQ-EQKAVWARFY 143          
BLAST of EWM23685.1 vs. NCBI_GenBank
Match: gi|566018777|gb|ETI41688.1| (hypothetical protein F443_13092 [Phytophthora parasitica P1569])

HSP 1 Score: 95.9005 bits (237), Expect = 6.263e-17
Identity = 51/147 (34.69%), Postives = 84/147 (57.14%), Query Frame = 0
Query:    6 VVDYDVEAVKAQVDTILASQGVE---DARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFL 149
            +  ++   V A+   ++ S   E   DARK  ++TL+ W       ++  S P++VA       ++V LW  YAA E  LRQ+KQA KVFE A +  I   ++ LW++Y  FC +R KF+NA+K+++RA++ L  + E+  +W+ F 
Sbjct:    5 IATWEASGVVARAKALIHSSNYEKVADARKDVDDTLAKWVAS----IQTQSDPMNVARG---SAAIVALWRQYAALEMELRQFKQATKVFERAVSCPIAGSSTPLWLQYADFCVQRKKFSNARKIFVRALQTLPEQ-EQKAVWARFY 143          
BLAST of EWM23685.1 vs. NCBI_GenBank
Match: gi|570322363|gb|ETO70311.1| (hypothetical protein F444_13187 [Phytophthora parasitica P1976])

HSP 1 Score: 95.9005 bits (237), Expect = 6.708e-17
Identity = 51/147 (34.69%), Postives = 84/147 (57.14%), Query Frame = 0
Query:    6 VVDYDVEAVKAQVDTILASQGVE---DARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFL 149
            +  ++   V A+   ++ S   E   DARK  ++TL+ W       ++  S P++VA       ++V LW  YAA E  LRQ+KQA KVFE A +  I   ++ LW++Y  FC +R KF+NA+K+++RA++ L  + E+  +W+ F 
Sbjct:    5 IATWEASGVVARAKALIHSSNYEKVADARKDVDDTLAKWVAS----IQTQSDPMNVARG---SAAIVALWRQYAALEMELRQFKQATKVFERAVSCPIAGSSTPLWLQYADFCVQRKKFSNARKIFVRALQTLPEQ-EQKAVWARFY 143          
BLAST of EWM23685.1 vs. NCBI_GenBank
Match: gi|970644912|gb|KUF85567.1| (Pre-mRNA-splicing factor clf1 [Phytophthora nicotianae])

HSP 1 Score: 95.1301 bits (235), Expect = 1.017e-16
Identity = 51/147 (34.69%), Postives = 84/147 (57.14%), Query Frame = 0
Query:    6 VVDYDVEAVKAQVDTILASQGVE---DARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEFL 149
            +  ++   V A+   ++ S   E   DARK  ++TL+ W       ++  S P++VA       ++V LW  YAA E  LRQ+KQA KVFE A +  I   ++ LW++Y  FC +R KF+NA+K+++RA++ L  + E+  +W+ F 
Sbjct:    5 IATWEASGVVARAKALIHSSNYEKVADARKDVDDTLAKWVAS----IQTQSDPMNVARG---SAAIVALWRQYAALEMELRQFKQATKVFERAVSCPIAGSSTPLWLQYADFCVQRKKFSNARKIFVRALQTLPEQ-EQKAVWARFY 143          
BLAST of EWM23685.1 vs. NCBI_GenBank
Match: gi|301104679|ref|XP_002901424.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100899|gb|EEY58951.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 93.5893 bits (231), Expect = 3.345e-16
Identity = 51/140 (36.43%), Postives = 82/140 (58.57%), Query Frame = 0
Query:    9 YDVEAVKAQVDTILASQGVEDARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAVEVLDTKAERDMIWSEF 148
            + +   KAQ+   L+   V DARK  ++T++ W       ++  S P++VA       ++V LW  YAA E  LRQ+KQA KVFE A +  I    + LW++Y  FC +R KF+NA+K+++RA++ L  + E+  +W+ F
Sbjct:   35 FSIFTHKAQLSD-LSYDKVADARKDVDDTVAKWV----AFVQTQSDPMNVARG---STAVVALWRQYAALEMELRQFKQATKVFERAVSCPIAGSCTALWLQYADFCVQRKKFSNARKIFVRALQTLPER-EQTAVWARF 165          
BLAST of EWM23685.1 vs. NCBI_GenBank
Match: gi|1210528132|dbj|GAX13247.1| (hypothetical protein FisN_17Hh184 [Fistulifera solaris])

HSP 1 Score: 91.6633 bits (226), Expect = 9.672e-16
Identity = 47/153 (30.72%), Postives = 80/153 (52.29%), Query Frame = 0
Query:    9 YDVEAVKAQVDTILASQGVEDARKHFEETLSSWADEYSRILEEASQPLSVADRQPYEESLVDLWLAYAAFERRLRQWKQAVKVFESATTDVIGEKTSRLWVEYGRFCRERGKFANAQKVYLRAV--------EVLDTKAERDMIWSEFLEALK 153
            YD   +    D  L +   E  +  F+  L +W D+       A + ++  D +   E++  LWLAYAAF  + +Q+K A + +E A    I     R+W+EY RF  ERGK   AQ +Y+RA+         ++D + +++++W+EFLE ++
Sbjct:    5 YDPNVIIQAADEKLVNGDFEGGQMMFQSALLTWVDD-------AREGVNQVDPETIREAVASLWLAYAAFLTKAKQFKSATEAYEQAVACQIAGSVGRVWLEYARFAEERGKLKTAQDIYIRALIGEGGKPSSIVDEQ-DQNLLWNEFLEMMR 149          
The following BLAST results are available for this feature:
BLAST of EWM23685.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104839|gb|EWM23685.1|0.000e+0100.00hypothetical protein Naga_100030g28 [Nannochlorops... [more]
gi|953493025|emb|CEG44971.1|4.390e-1927.20Tetratricopeptide repeat-containing domain [Plasmo... [more]
gi|570978292|gb|ETP39552.1|4.616e-1734.69hypothetical protein F442_12984 [Phytophthora para... [more]
gi|567956094|gb|ETK81719.1|4.906e-1734.69hypothetical protein L915_12791 [Phytophthora para... [more]
gi|675170403|ref|XP_008894086.1|4.949e-1734.69hypothetical protein PPTG_03163 [Phytophthora para... [more]
gi|566018777|gb|ETI41688.1|6.263e-1734.69hypothetical protein F443_13092 [Phytophthora para... [more]
gi|570322363|gb|ETO70311.1|6.708e-1734.69hypothetical protein F444_13187 [Phytophthora para... [more]
gi|970644912|gb|KUF85567.1|1.017e-1634.69Pre-mRNA-splicing factor clf1 [Phytophthora nicoti... [more]
gi|301104679|ref|XP_002901424.1|3.345e-1636.43conserved hypothetical protein [Phytophthora infes... [more]
gi|1210528132|dbj|GAX13247.1|9.672e-1630.72hypothetical protein FisN_17Hh184 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7007rna7007Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications