rna7001, rna7001 (mRNA) Nannochloropsis gaditana

Overview
Namerna7001
Unique Namerna7001
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1543
Alignment locationCM002470.1:213209..215091 -

Link to JBrowse

Properties
Property NameValue
Producttransmembrane bax inhibitor motif-containing protein 4
Orig transcript idgnl|cribi|Naga_100030g23.4185.mrna
Orig protein idgnl|cribi|Naga_100030g23.4185
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:213209..215091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g23gene6767Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23688.1cds6985Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7001rna7001-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7001 ID=rna7001|Name=rna7001|organism=Nannochloropsis gaditana|type=mRNA|length=1543bp
AATCAACAGAATTAAAGGACGATTCATCAAGGACCCGCGCAAGAATTCCT
GCTACTATATTCGACACAATTGTGCCAATTGGTCATGGCGTCCGATCCCG
CTGACTCCTCCCTCCAGCAGGCGCAAGTACGGGTTGAAAGCCAGGGCAGA
CATGGGGTCATGTCCGTCACGCACAATTGTATCAAGGCTTCAAAACTAAA
ATCGACTCTAGGCCTGATGTCCTACGATCCAGGGTACATGAATACCGCCG
TCTGCACGAGCCGCATCACCTTCATTGATGGCGAAAAAGGTATTCTACGA
TACAGGGGCTACCCGATTGAGCAGCTAGCGTCCAAGTCTAGCTTCATGGA
AACAGCCTTCTTGCTGTTGTACGGAGAGTTGCCCAGTGAGGCGCAGCTGA
AGCACTTTTGTGCCCGCGTTTACCATCATCAGACGGCGCTGCACGCCGAT
ATAGTGGCACTTTTGCAGACTATCCGGCACGACGCGCACTGTATGACCTC
CGTCATCAGCGCACTCGCTGCCATGAGTGCTCTTCATCCTGAGGCCAACC
CCGCACTGGAGGGGCAGGGGGTGTACAGTTCTCGAAAAACGCGCGAGAGC
CAGATGTTCACCCTGCTCGGCGCTTTCCCCACTTTGGCCGCTCATGTCCT
TCTGCGCCGCTCGGGCTCCTCGGTGCCTTGCCTTCCCGCGCCATCTTTAG
CGACGCTGTTGGACCCCGCGAGGCCTCGGGCATACGTGGAGCACTTCTTG
GTCTTGCTGGGCTTGGGCAAGGCCCGTCCCGGGGAGGAGGGCCCCGACCC
GCGCGTAGTGCGCGCCCTGGACGCAATCCTCCTGGCGCACGCCGACCACG
AGCTCAACTGCTCCACTGCCGCCGTTCGCCACCTCACAAGCTCAGGCGTG
GATGTCTACACGGCCGTCGCAGGCGCCACGGGGGCGCTGTACGGGCCCTT
GCACGGGGGGGCCACCGAAGCTGTCCTGCGCATGCTCCAGCAGATCGGCA
CGGAGGAGCGCATCCCAGCCTTCCTAGAAGCTGTGAAGGCAAAGGAGGCT
AAACTCATGGGCTTCGGTCACCGCGTGTACAAGAACTACGACCCGCGCGC
GGTTTTGGTGCGAGAGGTGGCGTACGAGGTCTTCCAGGTCTACGGGGCTG
ACCCGCTTATTCACGTGGCCACGGCCCTGGAGACAGCAGCGCGTTCGGAC
GATTACTTTGTCTCGCGGAAGCTGTACCCAAACATTGACTTTTACAGCGG
GCTCGTCTACAAGGCCATCGGCTTCCCCCTTGATTTCTTCCCCGTCCTCT
TCACGATGGGCCGCATGGCTGGCTGGCTAGCCCACTGGGAGGAGCTCTTG
ATGGGGCCAGAGGAGGAAAAGAAGATTGTGAGGCCCCGACAGATCTATCT
CGGCCCCGCGGAGCGAGCCTTCCTCCCCATTGAGGCGCGTGGGCACGTCA
GAATCGCCGCGGAGCCCGAGCGACTCCTTCCTTCCACGACACGAGCGAGA
TTGTAATCAGAAGCAACAAGGAAGTACAAACCTCCGAGCAAGA
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protein sequence of rna7001

>rna7001-protein ID=rna7001-protein|Name=rna7001|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MSCSPHTPLCSQLGKGHKESKKVMKTSSCYHDPKRGSADMAGGGDMEPPM
ASSSPYYYQQQAHTPVMTGQAIPAQAMPAEYYPSYHHHPAPYPHHHSPHQ
EMPNQSGSKPPAYPRGMEEFYDPEAAQAGEQGPSSFMDKTQGEIRLALLR
KVYTILSLQLLVTVAVSCLFAFNRGISDFVLATPQLFTVALILSFACLIG
LFCFKQKHPMNLILLGVFTLCQSFLVGLICTIYYRQGAGELVLQAFGITL
AIFVGLTAYTLYSDKDFSFLGGFCFAGLIGLMVWGLISWLTGWRSTFWYS
LFGALLFSALIVYDTWLLSKRFGPDEAITASIMLYLDVINLFLFILQLLG
GNRRD
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mRNA from alignment at CM002470.1:213209..215091-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7001 ID=rna7001|Name=rna7001|organism=Nannochloropsis gaditana|type=mRNA|length=1883bp|location=Sequence derived from alignment at CM002470.1:213209..215091- (Nannochloropsis gaditana)
TTGATTTTTTCCCAGATCCACCTCGAATTGATGCTTTTTACCGTGCACTC
TCTCAAGGCATTGGGCACCTTTACGCTGGAGCTTTTCTGGCAGGAAAGTT
CCATGTAGAAACAACTCCTGCGGCTTAGTGGTTATGTAGAGCTACCGACC
GTTCTCTCATTGCCTTCTCGGAACGGACAGAGAGCGAGTGTCGTTGCTCA
GTCAAGGATTTGCATCATTCCCTGTACTGCCCACCATATAACTTACAAAT
TACGGCGGATTTGTTTATCAATTTATGTGCATTATTATCCTTTGTCTAAA
TAGCACGATTTTTGTTCTCCTACTAATTGTCAGCGTTGAGTCGGACTGAT
CTTTTGTGCGATCTAGAGGGAGGCTGAGTGAGAGCGGAACTTGCCTTATG
CGTGGCAGAATCATTTGCACAACGCACATGGCTTACATATTCAACGCATA
AGAGATGGTTATATTTGTAAGTGGTCAGTTGAGAGATCCATTTGGAGTCC
GACTTACATGTCTTGCTCTCCACACACACCCTTGTGCTCACAATTAGGGA
AAGGACACAAAGAATCTAAAAAGGTCATGAAAACTTCTTCGTGTTACCAT
GATCCCAAGCGTGGGAGCGCGGACATGGCTGGTGGAGGGGATATGGAGCC
ACCAATGGCTTCCTCGTCGCCGTACTATTATCAACAACAAGCTCACACAC
CTGTGATGACGGGCCAAGCTATTCCTGCGCAGGCCATGCCTGCGGAGTAT
TATCCGTCCTATCACCATCACCCAGCGCCTTACCCGCACCATCATTCTCC
TCACCAAGAAATGCCGAATCAATCTGGTTCGAAGCCACCTGCATACCCCA
GAGGCATGGAAGAGTTTTACGATCCCGAGGCGGCACAAGCGGGTGAACAA
GGGCCGTCATCTTTTATGGACAAGACTCAGGGTGAAATTCGACTCGCGTT
GCTCCGCAAGGTGTACACAATCTTGTCCCTGCAACTTCTTGTGACGGTTG
CCGTTTCCTGCTTGTTTGCTTTCAATCGAGGTATCAGCGACTTCGTCCTG
GCTACACCTCAGCTCTTTACTGTGGCTCTGATTCTATCCTTCGCCTGCTT
GATCGGCCTCTTCTGTTTCAAACAAAAACACCCTATGAACTTGATTTTGT
TGGGTGTGTTCACTCTCTGTCAGTCCTTTCTTGTTGGCTTGATCTGCACT
ATCTACTACCGGCAGGGGGCTGGCGAATTGGTGCTGCAGGCCTTTGGGAT
CACACTGGCCATTTTCGTCGGGCTGACGGCCTATACGCTCTACAGCGACA
AGGACTTCTCCTTCTTGGGCGGATTCTGCTTTGCGGGTCTAATCGGCCTC
ATGGTATGGGGCCTCATTTCGTGGCTGACGGGCTGGCGCTCAACGTTTTG
GTACTCGCTCTTTGGAGCCCTCTTGTTCTCGGCCCTAATCGTCTACGACA
CTTGGCTGCTTTCCAAGCGCTTCGGACCCGACGAAGCCATCACCGCCAGC
ATTATGCTCTATCTTGATGTCATAAACCTCTTCCTCTTTATTTTGCAGCT
CTTGGGGGGAAATCGGCGCGATTAGAGACGAAAGTATGGGAATCTGTCCT
TGGGTAGGCGAGGCCGCCGTCAAGTAGCCTCGGTAGGGAAGGAATGATAG
GTAGTAGACGAAGGAGAGGATGAGGAGGCTCTCGTGTACGAACTCGATAT
TACAAGCAAAGTTTCTCCTGCTCGAAGAAAAACAGCTGGGCTACCATTAT
CGAGCGTGAAGACCACGTAAAAGCTTGGGGGGCGTGCAGGGAAAGCTGGG
TCGTCAACGATGTATCGGGGACCAGCCACAGACTTTGTAGATACTTAAAC
ACCTGAAAAAGAAAAATTGCACATATATCTTGC
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Coding sequence (CDS) from alignment at CM002470.1:213209..215091-

>rna7001 ID=rna7001|Name=rna7001|organism=Nannochloropsis gaditana|type=CDS|length=1068bp|location=Sequence derived from alignment at CM002470.1:213209..215091- (Nannochloropsis gaditana)
ATGTCTTGCTCTCCACACACACCCTTGTGCTCACAATTAGGGAAAGGACA
CAAAGAATCTAAAAAGGTCATGAAAACTTCTTCGTGTTACCATGATCCCA
AGCGTGGGAGCGCGGACATGGCTGGTGGAGGGGATATGGAGCCACCAATG
GCTTCCTCGTCGCCGTACTATTATCAACAACAAGCTCACACACCTGTGAT
GACGGGCCAAGCTATTCCTGCGCAGGCCATGCCTGCGGAGTATTATCCGT
CCTATCACCATCACCCAGCGCCTTACCCGCACCATCATTCTCCTCACCAA
GAAATGCCGAATCAATCTGGTTCGAAGCCACCTGCATACCCCAGAGGCAT
GGAAGAGTTTTACGATCCCGAGGCGGCACAAGCGGGTGAACAAGGGCCGT
CATCTTTTATGGACAAGACTCAGGGTGAAATTCGACTCGCGTTGCTCCGC
AAGGTGTACACAATCTTGTCCCTGCAACTTCTTGTGACGGTTGCCGTTTC
CTGCTTGTTTGCTTTCAATCGAGGTATCAGCGACTTCGTCCTGGCTACAC
CTCAGCTCTTTACTGTGGCTCTGATTCTATCCTTCGCCTGCTTGATCGGC
CTCTTCTGTTTCAAACAAAAACACCCTATGAACTTGATTTTGTTGGGTGT
GTTCACTCTCTGTCAGTCCTTTCTTGTTGGCTTGATCTGCACTATCTACT
ACCGGCAGGGGGCTGGCGAATTGGTGCTGCAGGCCTTTGGGATCACACTG
GCCATTTTCGTCGGGCTGACGGCCTATACGCTCTACAGCGACAAGGACTT
CTCCTTCTTGGGCGGATTCTGCTTTGCGGGTCTAATCGGCCTCATGGTAT
GGGGCCTCATTTCGTGGCTGACGGGCTGGCGCTCAACGTTTTGGTACTCG
CTCTTTGGAGCCCTCTTGTTCTCGGCCCTAATCGTCTACGACACTTGGCT
GCTTTCCAAGCGCTTCGGACCCGACGAAGCCATCACCGCCAGCATTATGC
TCTATCTTGATGTCATAAACCTCTTCCTCTTTATTTTGCAGCTCTTGGGG
GGAAATCGGCGCGATTAG
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Synonyms
Publications