rna7000, rna7000 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7000
Unique Name	rna7000
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1358
Alignment location	CM002470.1:211292..213214 +

Link to JBrowse

Properties


Property Name	Value
Product	citrate synthase
Orig transcript id	gnl\|cribi\|Naga_100030g22.4167.mrna
Orig protein id	gnl\|cribi\|Naga_100030g22.4167
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:211292..213214 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100030g22	gene6766	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7000	rna7000-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23670.1	cds6984	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:211292..213214+
coding sequence from alignment at CM002470.1:211292..213214+

mRNA sequence

>rna7000 ID=rna7000|Name=rna7000|organism=Nannochloropsis gaditana|type=mRNA|length=1358bp
CAGTTTGTATGAATTACTTGAAAGGCGCTTTAGGTTTGAAAAAGGACAAG
GGAAACGTTCTCGGCAACGAAGTCAACACCAGTAGGCCGAGCGGGCCTAG
CAACAGCGCCCCCACCCGAGAAACTCGTAGTGGCAGCTTTTCCACATACG
ATGCAGTATTCGATGGCAACGATGCGTTGTTGGGCATGACAATAGCATGC
TCCCAGACCGGGATTCCGGTGGTGGGAAGCCTTGTCTCTGGTGGTGCAGC
CAGCCGCAAAGGAGTACATATTGGCGATATTGTGATGAGCGTGGATGGTA
ATCCCGTGACCAGCTACGAAAGTTTGGAGGTCGCTCTTTGTGCCATGGAG
CGTCCAGTAACGTTTTCCTTCCATCGCTCGGGAAAGTCAGATCTAGTTCA
ACCGGTGGCGCGTCCAACCCTTCCACCCAGCGATGAGTCTGGCGATGTTG
AACGGCGGAGGAGGATTTTGACCGCGGCGGAGGAGCGCAGCAGAGCGTGG
GACCGGAAAGTTCAAAAAGCCGGTGGCAATCACAGGGGTGCTTCCAAGAA
GAGCGGGGAGGGATTGGACAGATTTGGGGCAAACGATGATGAGGCCACCA
AGGCCCAGGTCGCCCAGATCAAAAAATTTGAAGCGGCTCAGACAGCGGCC
TTGGGATATAACCCTTACGAATCGCACAGCATGTCGCGTGCACAAGCGCT
GGCACGCATAGAATTAGCGGGCCCGACACCATCAGGAAGCAATTCTCGGA
CCTCAGCGGCAGCCCTGTCGCCCCTGAACAGTCAGCCCCATCCCCCGCCC
TCTTGGACCCCCACCTCCCTGTCGCCGTCCCTCTCCGGCGACCGAAGGCC
CTTCGTTGCGCCCCTCAGCCAGGAGGAGCTCGAGAGCCCCGAGGCCTTCC
AGGCCGGCGAGGAGGCTGACTCAGCCATGGCCCTCATGCTGGACCGGCCC
TTGCCCGCATGGAGAACCGCCGCCTCCACGGTCCTCACCATCCTGGGCAA
CGTCTTGGCCGATCCGGCACAGGAGAAGTTCCGCCGAGTGCGCCTGCAGA
ATGCGGCTTTCCAGAGCAAGGTGGTGGCTGTCCCTGGTGCCGTGGACATG
CTGCATGCTGCGGGCTTCTGCTACACGATGGAGGACCAAGAGACCTTTCT
CTCCCTGCCCGGCCCGGCTTTGGAGGTGCCCCTGCGTGCTCGCGTGATTT
ATTACCGCATCCAGCAGGTGTTAGAGGACACGCAGGACCCCCTAGAGCTC
CCGCCCTTGTCTTGACTAGAGCGTGCACCCGTGGAAATTTGAACGTTTAC
TGTGCTCCAACACGTTCGCATGTTTATTGAATAAGGAAAGCAATGGTGAA
GCTATGTG

protein sequence of rna7000

>rna7000-protein ID=rna7000-protein|Name=rna7000|organism=Nannochloropsis gaditana|type=polypeptide|length=473bp
MASDPADSSLQQAQVRVESQGRHGVMSVTHNCIKASKLKSTLGLMSYDPG
YMNTAVCTSRITFIDGEKGILRYRGYPIEQLASKSSFMETAFLLLYGELP
SEAQLKHFCARVYHHQTALHADIVALLQTIRHDAHCMTSVISALAAMSAL
HPEANPALEGQGVYSSRKTRESQMFTLLGAFPTLAAHVLLRRSGSSVPCL
PAPSLATLLDPARPRAYVEHFLVLLGLGKARPGEEGPDPRVVRALDAILL
AHADHELNCSTAAVRHLTSSGVDVYTAVAGATGALYGPLHGGATEAVLRM
LQQIGTEERIPAFLEAVKAKEAKLMGFGHRVYKNYDPRAVLVREVAYEVF
QVYGADPLIHVATALETAARSDDYFVSRKLYPNIDFYSGLVYKAIGFPLD
FFPVLFTMGRMAGWLAHWEELLMGPEEEKKIVRPRQIYLGPAERAFLPIE
ARGHVRIAAEPERLLPSTTRARL

mRNA from alignment at CM002470.1:211292..213214+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7000 ID=rna7000|Name=rna7000|organism=Nannochloropsis gaditana|type=mRNA|length=1923bp|location=Sequence derived from alignment at CM002470.1:211292..213214+ (Nannochloropsis gaditana)
AATCAACAGAATTAAAGGACGATTCATCAAGGACCCGCGCAAGAATTCCT
GCTACTATATTCGACACAATTGTGCCAATTGGTCATGGCGTCCGATCCCG
ctgactcctccctccagcaggCGCAAGTACGGGTTGAAAGCCAGGGCAGA
CATGGGGTCATGTCCGTCACGCACAATTGTATCAAGGCTTCAAAACTAAA
ATCGACTCTAGGCCTGATGTCCTACGATCCAGGTACTTGTCCCACGGCAG
ACAGTGGAACCCATTTTATTCCCTTAACTAAAACCTCCATGCGTAGTAGC
AATATTCTTCAATTTGAAGCAAATACGACGTATGACTTCGATACATCTAT
GCCTCCACAACTCTCTCGATACACCTTGCGCTCGAAGTATTTTGTAGTGC
CCTCCAATTTGTTTCCGCAGGGATCCTTCATGCTGGAAACGTCAATCGGC
TTCAGGGCGTCCAGCGTGATCACTCAATGTGCTTGAACTATTTCCATTAG
GCAGCCTCTGTTGTAAAGATGCCGCGTCATTGTTGACTGCGTGATATGAA
ATATTTTGAAATGTTTCTCCATCTTGTCATTTATTCTTCCGACTCCGCCC
CTTTATCCTCAGGGTACATGAATACCGCCGTCTGCACGAGCCGCATCACC
TTCATTGATGGCGAAAAAGGTATTCTACGATACAGGGGCTACCCGATTGA
GCAGCTAGCGTCCAAGTCTAGCTTCATGGAAACAGCCTTCTTGCTGTTGT
ACGGAGAGTTGCCCAGTGAGGCGCAGCTGAAGCACTTTTGTGCCCGCGTT
TACCATCATCAGACGGCGCTGCACGCCGATATAGTGGCACTTTTGCAGAC
TATCCGGCACGACGCGCACTGTATGACCTCCGTCATCAGCGCACTCGCTG
CCATGAGTGCTCTTCATCCTGAGGCCAACCCCGCactggaggggcagggg
gtgtACAGTTCTCGAAAAACGCGCGAGAGCCAGATGTTCACCCTGCTCGG
CGCTTTCCCCACTTTGGCCGCTCATGTCCTTCTGCGCCGCTCGGGCTCCT
CGGTGCCTTGCCTTCCCGCGCCATCTTTAGCGACGCTGTTGGACCCCGCG
AGGCCTCGGGCATACGTGGAGCACTTCTTGGTCTTGCTGGGCTTGGGCAA
GGCCCgtcccggggaggagggccccgACCCGCGCGTAGTGCGCGCCCTGG
ACGCAATCCTCCTGGCGCACGCCGACCACGAGCTCAACTGCTCCACTGCC
GCCGTTCGCCACCTCACAAGCTCAGGCGTGGATGTCTACACGGCCGTCGC
AGGCGCCACGGGGGCGCTGTACGGGCCCTTGCACGGGGGGGCCACCGAAG
CTGTCCTGCGCATGCTCCAGCAGATCGGCACGGAGGAGCGCATCCCAGCC
TTCCTAGAAGCTgtgaaggcaaaggaggcTAAACTCATGGGCTTCGGTCA
CCGCGTGTACAAGAACTACGACCCGCGCGCGGTTTTGGTGCGAGAGGTGG
CGTACGAGGTCTTCCAGGTCTACGGGGCTGACCCGCTTATTCACGTGGCC
ACGGCCCTGGAGACAGCAGCGCGTTCGGACGATTACTTTGTCTCGCGGAA
GCTGTACCCAAACATTGACTTTTACAGCGGGCTCGTCTACAAGGCCATCG
GCTTCCCCCTTGatttcttccccgtcctcttcacgATGGGCCGCATGGCT
GGCTGGCTAGCCCACTGGGAGGAGCTCTTGATGGGgccagaggaggaaaa
gaagattGTGAGGCCCCGACAGATCTATCTCGGCCCCGCGGAgcgagcct
tcctccccattgAGGCGCGTGGGCACGTCAGAATCGCCGCGGAGCCCGAG
cgactccttccttccacgacACGAGCGAGATTGTAATCAGAAGCAACAAG
GAAGTACAAACCTCCGAGCAAGA

Coding sequence (CDS) from alignment at CM002470.1:211292..213214+

>rna7000 ID=rna7000|Name=rna7000|organism=Nannochloropsis gaditana|type=CDS|length=2844bp|location=Sequence derived from alignment at CM002470.1:211292..213214+ (Nannochloropsis gaditana)
ATGGCGTCCGATCCCGctgactcctccctccagcaggCGCAAGTACGGGT
TGAAAGCCAGGGCAGACATGGGGTCATGTCCGTCACGCACAATTGTATCA
AGGCTTCAAAACTAAAATCGACTCTAGGCCTGATGTCCTACGATCCAGGG
TACATGAATACCGCCGTCTGCACGAGCCGCATCACCTTCATTGATGGCGA
AAAAGGTATTCTACGATACAGGGGCTACCCGATTGAGCAGCTAGCGTCCA
AGTCTAGCTTCATGGAAACAGCCTTCTTGCTGTTGTACGGAGAGTTGCCC
AGTGAGGCGCAGCTGAAGCACTTTTGTGCCCGCGTTTACCATCATCAGAC
GGCGCTGCACGCCGATATAGTGGCACTTTTGCAGACTATCCGGCACGACG
CGCACTGTATGACCTCCGTCATCAGCGCACTCGCTGCCATGAGTGCTCTT
CATCCTGAGGCCAACCCCGCactggaggggcagggggtgtACAGTTCTCG
AAAAACGCGCGAGAGCCAGATGTTCACCCTGCTCGGCGCTTTCCCCACTT
TGGCCGCTCATGTCCTTCTGCGCCGCTCGGGCTCCTCGGTGCCTTGCCTT
CCCGCGCCATCTTTAGCGACGCTGTTGGACCCCGCGAGGCCTCGGGCATA
CGTGGAGCACTTCTTGGTCTTGCTGGGCTTGGGCAAGGCCCgtcccgggg
aggagggccccgACCCGCGCGTAGTGCGCGCCCTGGACGCAATCCTCCTG
GCGCACGCCGACCACGAGCTCAACTGCTCCACTGCCGCCGTTCGCCACCT
CACAAGCTCAGGCGTGGATGTCTACACGGCCGTCGCAGGCGCCACGGGGG
CGCTGTACGGGCCCTTGCACGGGGGGGCCACCGAAGCTGTCCTGCGCATG
CTCCAGCAGATCGGCACGGAGGAGCGCATCCCAGCCTTCCTAGAAGCTgt
gaaggcaaaggaggcTAAACTCATGGGCTTCGGTCACCGCGTGTACAAGA
ACTACGACCCGCGCGCGGTTTTGGTGCGAGAGGTGGCGTACGAGGTCTTC
CAGGTCTACGGGGCTGACCCGCTTATTCACGTGGCCACGGCCCTGGAGAC
AGCAGCGCGTTCGGACGATTACTTTGTCTCGCGGAAGCTGTACCCAAACA
TTGACTTTTACAGCGGGCTCGTCTACAAGGCCATCGGCTTCCCCCTTGat
ttcttccccgtcctcttcacgATGGGCCGCATGGCTGGCTGGCTAGCCCA
CTGGGAGGAGCTCTTGATGGGgccagaggaggaaaagaagattGTGAGGC
CCCGACAGATCTATCTCGGCCCCGCGGAgcgagccttcctccccattgAG
GCGCGTGGGCACGTCAGAATCGCCGCGGAGCCCGAGcgactccttccttc
cacgacACGAGCGAGATTGTAAATGGCGTCCGATCCCGctgactcctccc
tccagcaggCGCAAGTACGGGTTGAAAGCCAGGGCAGACATGGGGTCATG
TCCGTCACGCACAATTGTATCAAGGCTTCAAAACTAAAATCGACTCTAGG
CCTGATGTCCTACGATCCAGGGTACATGAATACCGCCGTCTGCACGAGCC
GCATCACCTTCATTGATGGCGAAAAAGGTATTCTACGATACAGGGGCTAC
CCGATTGAGCAGCTAGCGTCCAAGTCTAGCTTCATGGAAACAGCCTTCTT
GCTGTTGTACGGAGAGTTGCCCAGTGAGGCGCAGCTGAAGCACTTTTGTG
CCCGCGTTTACCATCATCAGACGGCGCTGCACGCCGATATAGTGGCACTT
TTGCAGACTATCCGGCACGACGCGCACTGTATGACCTCCGTCATCAGCGC
ACTCGCTGCCATGAGTGCTCTTCATCCTGAGGCCAACCCCGCactggagg
ggcagggggtgtACAGTTCTCGAAAAACGCGCGAGAGCCAGATGTTCACC
CTGCTCGGCGCTTTCCCCACTTTGGCCGCTCATGTCCTTCTGCGCCGCTC
GGGCTCCTCGGTGCCTTGCCTTCCCGCGCCATCTTTAGCGACGCTGTTGG
ACCCCGCGAGGCCTCGGGCATACGTGGAGCACTTCTTGGTCTTGCTGGGC
TTGGGCAAGGCCCgtcccggggaggagggccccgACCCGCGCGTAGTGCG
CGCCCTGGACGCAATCCTCCTGGCGCACGCCGACCACGAGCTCAACTGCT
CCACTGCCGCCGTTCGCCACCTCACAAGCTCAGGCGTGGATGTCTACACG
GCCGTCGCAGGCGCCACGGGGGCGCTGTACGGGCCCTTGCACGGGGGGGC
CACCGAAGCTGTCCTGCGCATGCTCCAGCAGATCGGCACGGAGGAGCGCA
TCCCAGCCTTCCTAGAAGCTgtgaaggcaaaggaggcTAAACTCATGGGC
TTCGGTCACCGCGTGTACAAGAACTACGACCCGCGCGCGGTTTTGGTGCG
AGAGGTGGCGTACGAGGTCTTCCAGGTCTACGGGGCTGACCCGCTTATTC
ACGTGGCCACGGCCCTGGAGACAGCAGCGCGTTCGGACGATTACTTTGTC
TCGCGGAAGCTGTACCCAAACATTGACTTTTACAGCGGGCTCGTCTACAA
GGCCATCGGCTTCCCCCTTGatttcttccccgtcctcttcacgATGGGCC
GCATGGCTGGCTGGCTAGCCCACTGGGAGGAGCTCTTGATGGGgccagag
gaggaaaagaagattGTGAGGCCCCGACAGATCTATCTCGGCCCCGCGGA
gcgagccttcctccccattgAGGCGCGTGGGCACGTCAGAATCGCCGCGG
AGCCCGAGcgactccttccttccacgacACGAGCGAGATTGTAA

Synonyms

Publications