rna70, rna70 (mRNA) Nannochloropsis gaditana

Overview
Namerna70
Unique Namerna70
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1198
Alignment locationCM002455.1:192910..194683 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100129g14.1881.mrna
Orig protein idgnl|cribi|Naga_100129g14.1881
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:192910..194683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100129g14gene68Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna70rna70-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30603.1cds70Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna70 ID=rna70|Name=rna70|organism=Nannochloropsis gaditana|type=mRNA|length=1198bp
ATGGACTTTTGCTACCCCCTATCCACCTGGTCCTTCGCAGTGCACACAGC
CTGTGCCAGCGTTGCCTTCGTCTGCCTCTTTCCCGCCGTGTACTTTGGTT
ACCAGATCCAGCACCGGCTTATCTTCATGACGCCCACGCTTTGCTTCGCC
CTGGCCTACGAAAACCTGCTCCTGGTGGTACCCAACACCCCTTTCTGCAC
CCTAAGCGCCCAGCGCTTTGGCTGGATCATGAACGCCGTGATCCCTCCCC
TCTTCTTGGTCGCCTCCTTCGAGACGGGCTACGCGGTCCACAAGCACCGG
TCCGTCAAGTACCTGGGCATCAATTTCGACGAAGGGAAACGCGTGGATAC
GGCCCCCTGCTCCTGGTTCCTCCGCAACTTGGTCCGGCTCATCGCCCTCG
CGCTTTTCTTCATGGGCCTCATTGTGAATTTCTCGGTGTTTTTCCCCGAC
GCCTCGGATAATGCCGGTATGTCCGGGTACCTTGGCCTGGGCCGGGGCGA
CGTGGCGCATTACTACGTCTCCATCGTCCCCTCCCTGGTTTTCTCCTTGG
TCACGCTCGTCATTGCCGCCACCATTAAACGGTACGGACGACACTCCACC
CTCCTCATCCCCCGGTCCTGCGGGTGGAACTGGCTCTTGCTGGGGAGCCT
TTTGCAGACGGCTGGGCAGTTCCCCGCCTCCACCGCCCTGTACCCCTCCA
CCTCCATGGCGGGGCAAGTCGTGTTGTTGATCTCGCTCTTGCTGACGCAT
CGGCTGGTGTTGCTGGACATGGGGGAGGCGGCGAAAATCACCGAATTCCT
CCGGCGGCAAAAGGCAGTGCAGCAACGCTTGGCGGTGGGCGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGCATGACGTTGCCTTGGGG
TTGACGGTGGGAGAGGACATGGAGGTGATAGAGGCAAGGGTGATCATGGA
TGGGGAAGTCTTGGACGTGAGAATACCAGAAAAGGAGGTTGTTCAAGGTG
GAGAATGCTTGAACTAGGCGGACAAAGGACAGGCGCGAAGGAAAGCGTGC
CGGGGTGAGGATAGAGGATACCTTTGCGGTTGAGAGTCTGGCGAGGCTTG
TGGTGGGATGGAAAGGAGGGAAGGGAGAGATGGCAATTGCATGGGGGATG
GGGCGGAGACTTGGTGGGAGAAAGTCCAAAATGTACAAACAAATGGCC
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protein sequence of rna70

>rna70-protein ID=rna70-protein|Name=rna70|organism=Nannochloropsis gaditana|type=polypeptide|length=370bp
MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFA
LAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHR
SVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPD
ASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHST
LLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTH
RLVLLDMGEAAKITEFLRRQKAVQQRLAVGGWVEARRGRKDGGGSRRRGR
AGGRAVADERPPPPRKTRTETVAFSSPGRERRVGIGTREGMGGSRDVAGE
RACGFGDGGREGSTGRRRSR
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mRNA from alignment at CM002455.1:192910..194683-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna70 ID=rna70|Name=rna70|organism=Nannochloropsis gaditana|type=mRNA|length=1774bp|location=Sequence derived from alignment at CM002455.1:192910..194683- (Nannochloropsis gaditana)
ACGTCGACTTGGGATGATGGCCGGGCCACGTCTCACACATGTTGCATCTT
ACGTAGACTTGCAGACTCGGACATTTTTGCGGGGGGCATCAGAGTATTGA
CCTGCACAGTATTGTACACCTTCACCACACAGAAAGAGAAGTCAGCCCTC
TTGAATGAAGGAAAAGCACCTGAAAACGGCGCGGCGACGGCCCCTCCATG
CTCTTGATCAGTAACCCTTTGATCGACCCGACATTCCTGCGCTCCCGCCC
TAGCCGCCCAAAAAGTCACCCTCAACATGTACGTAATTGCATCTCCTGCT
GGCCAGCCTTGTAACTTCCCGTGCTGCAAGGAATCGACAGGGAGGGCTAG
TGTTGACGCCCGCTTTCTCCCTCGCTCACTATTCCTCCCCCGTCACTCCC
GGTCCCCTCCCCCCCGAAATTAGCGCCCGCAGTCAGCATGGACTTTTGCT
ACCCCCTATCCACCTGGTCCTTCGCAGTGCACACAGCCTGTGCCAGCGTT
GCCTTCGTCTGCCTCTTTCCCGCCGTGTACTTTGGTTACCAGATCCAGCA
CCGGCTTATCTTCATGACGCCCACGCTTTGCTTCGCCCTGGCCTACGAAA
ACCTGCTCCTGGTGGTACCCAACACCCCTTTCTGCACCCTAAGCGCCCAG
CGCTTTGGCTGGATCATGAACGGTACGTCGGCGACTGGACAACTGCCCTC
GGGTCCCCCCCCTTCCCCTTCATGCCCCGGCCTCATTGGGATACTTACCC
TTCCTCCCTCCTTCCCTCCCTGCCTCCCTCCCTCCCTCCCAGCCGTGATC
CCTCCCCTCTTCTTGGTCGCCTCCTTCGAGACGGGCTACGCGGTCCACAA
GCACCGGTCCGTCAAGTACCTGGGCATCAATTTCGACGAAGGGAAACGCG
TGGATACGGCCCCCTGCTCCTGGTTCCTCCGCAACTTGGTCCGGCTCATC
GCCCTCGCGCTTTTCTTCATGGGCCTCATTGTGAATTTCTCGGTGTTTTT
CCCCGACGCCTCGGATAATGCCGGTATGTCCGGGTACCTTGGCCTGGGCC
GGGGCGACGTGGCGCATTACTACGTCTCCATCGTCCCCTCCCTGGTTTTC
TCCTTGGTCACGCTCGTCATTGCCGCCACCATTAAACGGTACGGACGACA
CTCCACCCTCCTCATCCCCCGGTCCTGCGGGTGGAACTGGCTCTTGCTGG
GGAGCCTTTTGCAGACGGCTGGGCAGTTCCCCGCCTCCACCGCCCTGTAC
CCCTCCACCTCCATGGCGGGGCAAGTCGTGTTGTTGATCTCGCTCTTGCT
GACGCATCGGCTGGTGTTGCTGGACATGGGGGAGGCGGCGAAAATCACCG
AATTCCTCCGGCGGCAAAAGGCAGTGCAGCAACGCTTGGCGGTGGGCGGG
TGGGTGGAGGCTCGGAGGGGGAGGAAGGATGGGGGGGGAAGCAGGCGCCG
AGGGAGGGCGGGAGGGAGGGCAGTGGCAGACGAACGGCCACCACCACCAC
GGAAAACACGGACGGAGACGGTCGCTTTCTCATCACCAGGGAGGGAAAGG
AGGGTTGGAATTGGGACGAGGGAGGGGATGGGAGGGTCAAGGGACGTTGC
CGGGGAGCGTGCGTGCGGATTCGGAGACGGAGGGAGGGAAGGAAGTACCG
GGCGTAGAAGGAGCCGATGAGGAAGACATGGAGGGGGCAATGGGTAACGT
GTCCTCCATGGAAGAAGGGAGGGGGTTTCCGCCCTCCGAGGGGGCTGGTG
TGGTGCAATTGAGCGGAGGGGAGG
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Coding sequence (CDS) from alignment at CM002455.1:192910..194683-

>rna70 ID=rna70|Name=rna70|organism=Nannochloropsis gaditana|type=CDS|length=2226bp|location=Sequence derived from alignment at CM002455.1:192910..194683- (Nannochloropsis gaditana)
CCGTGATCCCTCCCCTCTTCTTGGTCGCCTCCTTCGAGACGGGCTACGCG
GTCCACAAGCACCGGTCCGTCAAGTACCTGGGCATCAATTTCGACGAAGG
GAAACGCGTGGATACGGCCCCCTGCTCCTGGTTCCTCCGCAACTTGGTCC
GGCTCATCGCCCTCGCGCTTTTCTTCATGGGCCTCATTGTGAATTTCTCG
GTGTTTTTCCCCGACGCCTCGGATAATGCCGGTATGTCCGGGTACCTTGG
CCTGGGCCGGGGCGACGTGGCGCATTACTACGTCTCCATCGTCCCCTCCC
TGGTTTTCTCCTTGGTCACGCTCGTCATTGCCGCCACCATTAAACGGTAC
GGACGACACTCCACCCTCCTCATCCCCCGGTCCTGCGGGTGGAACTGGCT
CTTGCTGGGGAGCCTTTTGCAGACGGCTGGGCAGTTCCCCGCCTCCACCG
CCCTGTACCCCTCCACCTCCATGGCGGGGCAAGTCGTGTTGTTGATCTCG
CTCTTGCTGACGCATCGGCTGGTGTTGCTGGACATGGGGGAGGCGGCGAA
AATCACCGAATTCCTCCGGCGGCAAAAGGCAGTGCAGCAACGCTTGGCGG
TGGGCGGGTGGGTGGAGGCTCGGAGGGGGAGGAAGGATGGGGGGGGAAGC
AGGCGCCGAGGGAGGGCGGGAGGGAGGGCAGTGGCAGACGAACGGCCACC
ACCACCACGGAAAACACGGACGGAGACGGTCGCTTTCTCATCACCAGGGA
GGGAAAGGAGGGTTGGAATTGGGACGAGGGAGGGGATGGGAGGGTCAAGG
GACGTTGCCGGGGAGCGTGCGTGCGGATTCGGAGACGGAGGGAGGGAAGG
AAGTACCGGGCGTAGAAGGAGCCGATGAATGGACTTTTGCTACCCCCTAT
CCACCTGGTCCTTCGCAGTGCACACAGCCTGTGCCAGCGTTGCCTTCGTC
TGCCTCTTTCCCGCCGTGTACTTTGGTTACCAGATCCAGCACCGGCTTAT
CTTCATGACGCCCACGCTTTGCTTCGCCCTGGCCTACGAAAACCTGCTCC
TGGTGGTACCCAACACCCCTTTCTGCACCCTAAGCGCCCAGCGCTTTGGC
TGGATCATGAACGCCGTGATCCCTCCCCTCTTCTTGGTCGCCTCCTTCGA
GACGGGCTACGCGGTCCACAAGCACCGGTCCGTCAAGTACCTGGGCATCA
ATTTCGACGAAGGGAAACGCGTGGATACGGCCCCCTGCTCCTGGTTCCTC
CGCAACTTGGTCCGGCTCATCGCCCTCGCGCTTTTCTTCATGGGCCTCAT
TGTGAATTTCTCGGTGTTTTTCCCCGACGCCTCGGATAATGCCGGTATGT
CCGGGTACCTTGGCCTGGGCCGGGGCGACGTGGCGCATTACTACGTCTCC
ATCGTCCCCTCCCTGGTTTTCTCCTTGGTCACGCTCGTCATTGCCGCCAC
CATTAAACGGTACGGACGACACTCCACCCTCCTCATCCCCCGGTCCTGCG
GGTGGAACTGGCTCTTGCTGGGGAGCCTTTTGCAGACGGCTGGGCAGTTC
CCCGCCTCCACCGCCCTGTACCCCTCCACCTCCATGGCGGGGCAAGTCGT
GTTGTTGATCTCGCTCTTGCTGACGCATCGGCTGGTGTTGCTGGACATGG
GGGAGGCGGCGAAAATCACCGAATTCCTCCGGCGGCAAAAGGCAGTGCAG
CAACGCTTGGCGGTGGGCGGGTGGGTGGAGGCTCGGAGGGGGAGGAAGGA
TGGGGGGGGAAGCAGGCGCCGAGGGAGGGCGGGAGGGAGGGCAGTGGCAG
ACGAACGGCCACCACCACCACGGAAAACACGGACGGAGACGGTCGCTTTC
TCATCACCAGGGAGGGAAAGGAGGGTTGGAATTGGGACGAGGGAGGGGAT
GGGAGGGTCAAGGGACGTTGCCGGGGAGCGTGCGTGCGGATTCGGAGACG
GAGGGAGGGAAGGAAGTACCGGGCGTAGAAGGAGCCGATGAATGGACTTT
TGCTACCCCCTATCCACCTGGTCCTTCGCAGTGCACACAGCCTGTGCCAG
CGTTGCCTTCGTCTGCCTCTTTCCCGCCGTGTACTTTGGTTACCAGATCC
AGCACCGGCTTATCTTCATGACGCCCACGCTTTGCTTCGCCCTGGCCTAC
GAAAACCTGCTCCTGGTGGTACCCAACACCCCTTTCTGCACCCTAAGCGC
CCAGCGCTTTGGCTGGATCATGAACG
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Synonyms
Publications