EWM30603.1, cds70 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|585113275|gb|EWM30603.1| (hypothetical protein Naga_100129g14 [Nannochloropsis gaditana]) HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0 Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 0
Query: 1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAVGGWVEARRGRKDGGGSRRRGRAGGRAVADERPPPPRKTRTETVAFSSPGRERRVGIGTREGMGGSRDVAGERACGFGDGGREGSTGRRRSR 370
MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAVGGWVEARRGRKDGGGSRRRGRAGGRAVADERPPPPRKTRTETVAFSSPGRERRVGIGTREGMGGSRDVAGERACGFGDGGREGSTGRRRSR
Sbjct: 1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAVGGWVEARRGRKDGGGSRRRGRAGGRAVADERPPPPRKTRTETVAFSSPGRERRVGIGTREGMGGSRDVAGERACGFGDGGREGSTGRRRSR 370
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|585113274|gb|EWM30602.1| (hypothetical protein Naga_100129g14 [Nannochloropsis gaditana]) HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0 Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0
Query: 1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAV 279
MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAV
Sbjct: 1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAV 279
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|299472212|emb|CBN77182.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 135.961 bits (341), Expect = 2.131e-32 Identity = 84/270 (31.11%), Postives = 144/270 (53.33%), Query Frame = 0
Query: 7 LSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQ 274
L T FAV A+V+ +C ++ G + + P +C LAYENL+L + N + G A + PLFLV +FE YAVHK RSV++ GI FD+G R PCSW LRN V ++++ LF + ++VN+ + D + AG +G + + H ++++P+ + + L IA + +YG H+++++ + GW +L LG+L GQ P + + GQV+ L+S++ R + ++ A + FL ++ ++
Sbjct: 11 LETVWFAV---LAAVSLLCFPFGIWMGRRFTILAAKLVPVVCLLLAYENLVLALSNVLSDDSKFVQIGRTTRAAVIPLFLVVTFEVAYAVHKRRSVQFCGIVFDQGHRRGVEPCSWVLRNFVGIVSVLLFVVHILVNYDIGIGD-DNKAGGTGLVET-QDASLHLLLALLPTTGMTALALYIAVYMWKYGNHASIVVQSTVCNGWMFLFLGTLALLGGQVPPEWC-FRVVNETGQVLFLLSVIAIGREIGREVQAADNFSHFLEKENELE 274
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|397639525|gb|EJK73616.1| (hypothetical protein THAOC_04749 [Thalassiosira oceanica]) HSP 1 Score: 92.4337 bits (228), Expect = 5.408e-18 Identity = 75/238 (31.51%), Postives = 111/238 (46.64%), Query Frame = 0
Query: 83 PLFLVASFETGYAVHKHRSVKYLGINFDEGKRV-DTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDAS-DNAGMSGYLGLGRGD-----VAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRS-CG-WNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRR--QKAVQQRLAVGGWVEARRGRKDGGGSRRRGRAGGRAVADE 309
P L+ FE Y K RSV + G+ FD+G RV DT S LRN +R +ALAL +GL+VNF + + S D G +G+ + GD VS++P+L+ LV+ ++ + RYG S++++ S C W + G L Q LY S G +V +I++LL V DM + ++ FL K Q +AV R ++D V DE
Sbjct: 8 PALLMTIFELTYLTMKRRSVNFCGMQFDQGVRVRDTMVMSCLLRNFIRTLALALLVIGLLVNFDILYNGISHDLVGRAGWWSVFEGDGDEDSQIFLIVSLLPTLILILVSFYLSIVLWRYGTESSMVVHSSMCNPWFYPFFGMLALALTQL-FDEKLYNIMSNTGYLVYIITVLLAMVEVDKDMVKNDEVANFLVEVAYKGDQVCVAVPSPASTRSRQRDEEVGLEGDDIPQMKVEDE 244
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|695433534|ref|XP_009531201.1| (hypothetical protein PHYSODRAFT_562300 [Phytophthora sojae] >gi|348673953|gb|EGZ13772.1| hypothetical protein PHYSODRAFT_562300 [Phytophthora sojae]) HSP 1 Score: 93.5893 bits (231), Expect = 1.422e-17 Identity = 65/256 (25.39%), Postives = 120/256 (46.88%), Query Frame = 0
Query: 42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVR----LIALALFFMGLIVNF---SVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
+TP +CF+L ++N ++ S Q +A + P+ L+ +E Y VHKH+SV + GI+F+ G R + C W+L +R L+ AL + L+V + S P+ + + G AH +I+P+LV + L I + YG + + ++ +C W W+L+G++ G S +Y +S AG+++++ +++ R V DM + + EF+ + A +R
Sbjct: 47 LLTPFICFSLVFDNAIMATTGIDRRRASTQAM-LAFHACVTPMLLLVCYELAYMVHKHKSVNFCGISFESGHRERGSSCDNAGAASSLARRRWWLSTCLRFFVWLVGCALLVLNLLVTYRWTSDLTPEIASMYELQG------DSTAHAVCAILPALVLVALALYIGLRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLVGYLMPS-PIYALSSNAGELIMMATIVRMFREVHHDMQQGLQFDEFIDPEGAAARR 294
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|1214705596|gb|OWZ17268.1| (hypothetical protein PHMEG_0008807 [Phytophthora megakarya]) HSP 1 Score: 85.8853 bits (211), Expect = 6.171e-15 Identity = 67/250 (26.80%), Postives = 119/250 (47.60%), Query Frame = 0
Query: 42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVRLIALALFFMGLIVNFSVFFPDASD-NAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
+TP +CF+L ++N ++ S Q VIP L LV +E Y VHKH+SV + GI+F+ G R + C W+ +R I + + L++N V + SD ++ L +VAH +I+P+LV + L I + YG + + ++ +C W W+L+G++ G S +Y +S AG+++++ +++ R V DM + + EF+ + A +R
Sbjct: 45 LLTPFICFSLVFDNAVMATTGIDRRRASTQAMLAFHACVIPMLLLVC-YELAYMVHKHKSVNFCGISFESGHRARGSSCEHAGAASNLAKRRWW-STCLRFIVWVVSCVLLVLNLLVAYRWTSDLTPEIASMYDLQGDNVAHAVCAILPALVLVALALYIGMQLWNYGTNYSYMVHATCFNPWIWMLVGAVSLLVGYLMPS-PIYAMSSNAGELIMMATIVRMFREVHHDMQQGLQFDEFIDPEGAAARR 291
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|970663820|gb|KUG00896.1| (hypothetical protein AM587_10009962 [Phytophthora nicotianae]) HSP 1 Score: 85.1149 bits (209), Expect = 1.103e-14 Identity = 62/250 (24.80%), Postives = 120/250 (48.00%), Query Frame = 0
Query: 42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVRLIALALFFMGLIVNFSVFFPDASD-NAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
+TP +CF+L ++N ++ S Q +A + P+ L+ +E Y VHKH+SV + GI F+ G R + C+ W++ +R I + L++N V + SD + ++ L AH +I+P+L+ ++ L I + YG + + ++ +C W W+L+G++ G S ++ +S AG++V++ +++ R V DM + + EF+ + A +R
Sbjct: 46 LLTPFICFSLVFDNAVMATTGIDRRHASTQAM-LAFHACVTPMLLLVCYELAYMVHKHKSVNFCGIAFESGHRERGSSCANAGAASALAKRRWWMSTCLRFIVWLVGCALLVLNLLVAYRWTSDLSLEITSMYELQGDSTAHAVCAILPALILVVLALYIGIRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLTGYLMPS-PIFALSSNAGELVMMATIVRMFREVHHDMQQGLQFGEFIDPEGAAARR 293
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|570949596|gb|ETP14853.1| (hypothetical protein F441_10254 [Phytophthora parasitica CJ01A1] >gi|570949597|gb|ETP14854.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1]) HSP 1 Score: 84.7297 bits (208), Expect = 1.259e-14 Identity = 62/250 (24.80%), Postives = 120/250 (48.00%), Query Frame = 0
Query: 42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVRLIALALFFMGLIVNFSVFFPDASD-NAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
+TP +CF+L ++N ++ S Q +A + P+ L+ +E Y VHKH+SV + GI F+ G R + C+ W++ +R I + L++N V + SD + ++ L AH +I+P+L+ ++ L I + YG + + ++ +C W W+L+G++ G S ++ +S AG++V++ +++ R V DM + + EF+ + A +R
Sbjct: 46 LLTPFICFSLVFDNAVMATTGIDRRHASTQAM-LAFHACVTPMLLLVCYELAYMVHKHKSVNFCGIAFESGHRERGSSCANAGAASALAKRRWWMSTCLRFIVWLVGCALLVLNLLVAYRWTSDLSLEITSMYELQGDSTAHAVCAILPALILVVLALYIGIRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLTGYLMPS-PIFALSSNAGELVMMATIVRMFREVHHDMQQGLQFGEFIDPEGAAARR 293
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|566022107|gb|ETI45018.1| (hypothetical protein F443_10317 [Phytophthora parasitica P1569] >gi|566022108|gb|ETI45019.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567959415|gb|ETK84988.1| hypothetical protein L915_10090 [Phytophthora parasitica] >gi|568047736|gb|ETM44808.1| hypothetical protein L914_09968 [Phytophthora parasitica] >gi|568047737|gb|ETM44809.1| hypothetical protein, variant [Phytophthora parasitica]) HSP 1 Score: 84.7297 bits (208), Expect = 1.345e-14 Identity = 62/250 (24.80%), Postives = 120/250 (48.00%), Query Frame = 0
Query: 42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVRLIALALFFMGLIVNFSVFFPDASD-NAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
+TP +CF+L ++N ++ S Q +A + P+ L+ +E Y VHKH+SV + GI F+ G R + C+ W++ +R I + L++N V + SD + ++ L AH +I+P+L+ ++ L I + YG + + ++ +C W W+L+G++ G S ++ +S AG++V++ +++ R V DM + + EF+ + A +R
Sbjct: 46 LLTPFICFSLVFDNAVMATTGIDRRHASTQAM-LAFHACVTPMLLLVCYELAYMVHKHKSVNFCGIAFESGHRERGSSCANAGAASALAKRRWWMSTCLRFIVWLVGCALLVLNLLVAYRWTSDLSLEITSMYELQGDSTAHAVCAILPALILVVLALYIGIRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLTGYLMPS-PIFALSSNAGELVMMATIVRMFREVHHDMQQGLQFGEFIDPEGAAARR 293
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|301108279|ref|XP_002903221.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097593|gb|EEY55645.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 84.7297 bits (208), Expect = 1.437e-14 Identity = 62/250 (24.80%), Postives = 120/250 (48.00%), Query Frame = 0
Query: 42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVRLIALALFFMGLIVNFSVFFPDASD-NAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
+TP +CF+L ++N ++ S Q +A + P+ L+ +E Y VHKH+SV + GI+F+ G R + C+ W+L +R I + L++N V + SD ++ L + AH +I+P++V + L I + YG + + ++ +C W W+L+G++ G + + +Y +S AG++ ++ +++ R V DM + + EF+ + A +R
Sbjct: 46 LLTPFICFSLVFDNAIMATTGIDRRRASTQVM-LAFHACVTPMLLLVCYELAYLVHKHKSVNFCGISFESGHRERGSSCANAGAAASLAKRRWWLSTCLRFIVWLMACALLVLNLLVAYRWTSDLTPEVTSMYELQGDNAAHAVCAILPAVVLVALALYIGIRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLIG-YVMPSPIYALSSNAGELTMMATIVRMLREVHHDMQQGLQFGEFIDPEGAAARR 293 The following BLAST results are available for this feature:
BLAST of EWM30603.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|