EWM30603.1, cds70 (CDS) Nannochloropsis gaditana

Overview
NameEWM30603.1
Unique Namecds70
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:194012..194246 -
Alignment locationCM002455.1:193014..193891 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30603.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100129g14.1881.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:194012..194246 -
CM002455.1supercontigCM002455.1:193014..193891 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|585113275|gb|EWM30603.1| (hypothetical protein Naga_100129g14 [Nannochloropsis gaditana])

HSP 1 Score: 752.666 bits (1942), Expect = 0.000e+0
Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 0
Query:    1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAVGGWVEARRGRKDGGGSRRRGRAGGRAVADERPPPPRKTRTETVAFSSPGRERRVGIGTREGMGGSRDVAGERACGFGDGGREGSTGRRRSR 370
            MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAVGGWVEARRGRKDGGGSRRRGRAGGRAVADERPPPPRKTRTETVAFSSPGRERRVGIGTREGMGGSRDVAGERACGFGDGGREGSTGRRRSR
Sbjct:    1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAVGGWVEARRGRKDGGGSRRRGRAGGRAVADERPPPPRKTRTETVAFSSPGRERRVGIGTREGMGGSRDVAGERACGFGDGGREGSTGRRRSR 370          
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|585113274|gb|EWM30602.1| (hypothetical protein Naga_100129g14 [Nannochloropsis gaditana])

HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0
Query:    1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAV 279
            MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAV
Sbjct:    1 MDFCYPLSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSCGWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQRLAV 279          
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|299472212|emb|CBN77182.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 135.961 bits (341), Expect = 2.131e-32
Identity = 84/270 (31.11%), Postives = 144/270 (53.33%), Query Frame = 0
Query:    7 LSTWSFAVHTACASVAFVCLFPAVYFGYQIQHRLIFMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQ 274
            L T  FAV    A+V+ +C    ++ G +       + P +C  LAYENL+L + N         + G    A + PLFLV +FE  YAVHK RSV++ GI FD+G R    PCSW LRN V ++++ LF + ++VN+ +   D  + AG +G +   +    H  ++++P+   + + L IA  + +YG H+++++  +   GW +L LG+L    GQ P     +   +  GQV+ L+S++   R +  ++  A   + FL ++  ++
Sbjct:   11 LETVWFAV---LAAVSLLCFPFGIWMGRRFTILAAKLVPVVCLLLAYENLVLALSNVLSDDSKFVQIGRTTRAAVIPLFLVVTFEVAYAVHKRRSVQFCGIVFDQGHRRGVEPCSWVLRNFVGIVSVLLFVVHILVNYDIGIGD-DNKAGGTGLVET-QDASLHLLLALLPTTGMTALALYIAVYMWKYGNHASIVVQSTVCNGWMFLFLGTLALLGGQVPPEWC-FRVVNETGQVLFLLSVIAIGREIGREVQAADNFSHFLEKENELE 274          
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|397639525|gb|EJK73616.1| (hypothetical protein THAOC_04749 [Thalassiosira oceanica])

HSP 1 Score: 92.4337 bits (228), Expect = 5.408e-18
Identity = 75/238 (31.51%), Postives = 111/238 (46.64%), Query Frame = 0
Query:   83 PLFLVASFETGYAVHKHRSVKYLGINFDEGKRV-DTAPCSWFLRNLVRLIALALFFMGLIVNFSVFFPDAS-DNAGMSGYLGLGRGD-----VAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRS-CG-WNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRR--QKAVQQRLAVGGWVEARRGRKDGGGSRRRGRAGGRAVADE 309
            P  L+  FE  Y   K RSV + G+ FD+G RV DT   S  LRN +R +ALAL  +GL+VNF + +   S D  G +G+  +  GD          VS++P+L+  LV+  ++  + RYG  S++++  S C  W +   G L     Q      LY   S  G +V +I++LL    V  DM +  ++  FL     K  Q  +AV      R  ++D              V DE
Sbjct:    8 PALLMTIFELTYLTMKRRSVNFCGMQFDQGVRVRDTMVMSCLLRNFIRTLALALLVIGLLVNFDILYNGISHDLVGRAGWWSVFEGDGDEDSQIFLIVSLLPTLILILVSFYLSIVLWRYGTESSMVVHSSMCNPWFYPFFGMLALALTQL-FDEKLYNIMSNTGYLVYIITVLLAMVEVDKDMVKNDEVANFLVEVAYKGDQVCVAVPSPASTRSRQRDEEVGLEGDDIPQMKVEDE 244          
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|695433534|ref|XP_009531201.1| (hypothetical protein PHYSODRAFT_562300 [Phytophthora sojae] >gi|348673953|gb|EGZ13772.1| hypothetical protein PHYSODRAFT_562300 [Phytophthora sojae])

HSP 1 Score: 93.5893 bits (231), Expect = 1.422e-17
Identity = 65/256 (25.39%), Postives = 120/256 (46.88%), Query Frame = 0
Query:   42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVR----LIALALFFMGLIVNF---SVFFPDASDNAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
             +TP +CF+L ++N ++          S Q      +A + P+ L+  +E  Y VHKH+SV + GI+F+ G R   + C             W+L   +R    L+  AL  + L+V +   S   P+ +    + G         AH   +I+P+LV   + L I   +  YG + + ++  +C   W W+L+G++    G    S  +Y  +S AG+++++ +++   R V  DM +  +  EF+  + A  +R
Sbjct:   47 LLTPFICFSLVFDNAIMATTGIDRRRASTQAM-LAFHACVTPMLLLVCYELAYMVHKHKSVNFCGISFESGHRERGSSCDNAGAASSLARRRWWLSTCLRFFVWLVGCALLVLNLLVTYRWTSDLTPEIASMYELQG------DSTAHAVCAILPALVLVALALYIGLRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLVGYLMPS-PIYALSSNAGELIMMATIVRMFREVHHDMQQGLQFDEFIDPEGAAARR 294          
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|1214705596|gb|OWZ17268.1| (hypothetical protein PHMEG_0008807 [Phytophthora megakarya])

HSP 1 Score: 85.8853 bits (211), Expect = 6.171e-15
Identity = 67/250 (26.80%), Postives = 119/250 (47.60%), Query Frame = 0
Query:   42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVRLIALALFFMGLIVNFSVFFPDASD-NAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
             +TP +CF+L ++N ++          S Q        VIP L LV  +E  Y VHKH+SV + GI+F+ G R   + C             W+    +R I   +  + L++N  V +   SD    ++    L   +VAH   +I+P+LV   + L I   +  YG + + ++  +C   W W+L+G++    G    S  +Y  +S AG+++++ +++   R V  DM +  +  EF+  + A  +R
Sbjct:   45 LLTPFICFSLVFDNAVMATTGIDRRRASTQAMLAFHACVIPMLLLVC-YELAYMVHKHKSVNFCGISFESGHRARGSSCEHAGAASNLAKRRWW-STCLRFIVWVVSCVLLVLNLLVAYRWTSDLTPEIASMYDLQGDNVAHAVCAILPALVLVALALYIGMQLWNYGTNYSYMVHATCFNPWIWMLVGAVSLLVGYLMPS-PIYAMSSNAGELIMMATIVRMFREVHHDMQQGLQFDEFIDPEGAAARR 291          
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|970663820|gb|KUG00896.1| (hypothetical protein AM587_10009962 [Phytophthora nicotianae])

HSP 1 Score: 85.1149 bits (209), Expect = 1.103e-14
Identity = 62/250 (24.80%), Postives = 120/250 (48.00%), Query Frame = 0
Query:   42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVRLIALALFFMGLIVNFSVFFPDASD-NAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
             +TP +CF+L ++N ++          S Q      +A + P+ L+  +E  Y VHKH+SV + GI F+ G R   + C+            W++   +R I   +    L++N  V +   SD +  ++    L     AH   +I+P+L+  ++ L I   +  YG + + ++  +C   W W+L+G++    G    S  ++  +S AG++V++ +++   R V  DM +  +  EF+  + A  +R
Sbjct:   46 LLTPFICFSLVFDNAVMATTGIDRRHASTQAM-LAFHACVTPMLLLVCYELAYMVHKHKSVNFCGIAFESGHRERGSSCANAGAASALAKRRWWMSTCLRFIVWLVGCALLVLNLLVAYRWTSDLSLEITSMYELQGDSTAHAVCAILPALILVVLALYIGIRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLTGYLMPS-PIFALSSNAGELVMMATIVRMFREVHHDMQQGLQFGEFIDPEGAAARR 293          
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|570949596|gb|ETP14853.1| (hypothetical protein F441_10254 [Phytophthora parasitica CJ01A1] >gi|570949597|gb|ETP14854.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 84.7297 bits (208), Expect = 1.259e-14
Identity = 62/250 (24.80%), Postives = 120/250 (48.00%), Query Frame = 0
Query:   42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVRLIALALFFMGLIVNFSVFFPDASD-NAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
             +TP +CF+L ++N ++          S Q      +A + P+ L+  +E  Y VHKH+SV + GI F+ G R   + C+            W++   +R I   +    L++N  V +   SD +  ++    L     AH   +I+P+L+  ++ L I   +  YG + + ++  +C   W W+L+G++    G    S  ++  +S AG++V++ +++   R V  DM +  +  EF+  + A  +R
Sbjct:   46 LLTPFICFSLVFDNAVMATTGIDRRHASTQAM-LAFHACVTPMLLLVCYELAYMVHKHKSVNFCGIAFESGHRERGSSCANAGAASALAKRRWWMSTCLRFIVWLVGCALLVLNLLVAYRWTSDLSLEITSMYELQGDSTAHAVCAILPALILVVLALYIGIRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLTGYLMPS-PIFALSSNAGELVMMATIVRMFREVHHDMQQGLQFGEFIDPEGAAARR 293          
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|566022107|gb|ETI45018.1| (hypothetical protein F443_10317 [Phytophthora parasitica P1569] >gi|566022108|gb|ETI45019.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567959415|gb|ETK84988.1| hypothetical protein L915_10090 [Phytophthora parasitica] >gi|568047736|gb|ETM44808.1| hypothetical protein L914_09968 [Phytophthora parasitica] >gi|568047737|gb|ETM44809.1| hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 84.7297 bits (208), Expect = 1.345e-14
Identity = 62/250 (24.80%), Postives = 120/250 (48.00%), Query Frame = 0
Query:   42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVRLIALALFFMGLIVNFSVFFPDASD-NAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
             +TP +CF+L ++N ++          S Q      +A + P+ L+  +E  Y VHKH+SV + GI F+ G R   + C+            W++   +R I   +    L++N  V +   SD +  ++    L     AH   +I+P+L+  ++ L I   +  YG + + ++  +C   W W+L+G++    G    S  ++  +S AG++V++ +++   R V  DM +  +  EF+  + A  +R
Sbjct:   46 LLTPFICFSLVFDNAVMATTGIDRRHASTQAM-LAFHACVTPMLLLVCYELAYMVHKHKSVNFCGIAFESGHRERGSSCANAGAASALAKRRWWMSTCLRFIVWLVGCALLVLNLLVAYRWTSDLSLEITSMYELQGDSTAHAVCAILPALILVVLALYIGIRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLTGYLMPS-PIFALSSNAGELVMMATIVRMFREVHHDMQQGLQFGEFIDPEGAAARR 293          
BLAST of EWM30603.1 vs. NCBI_GenBank
Match: gi|301108279|ref|XP_002903221.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097593|gb|EEY55645.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 84.7297 bits (208), Expect = 1.437e-14
Identity = 62/250 (24.80%), Postives = 120/250 (48.00%), Query Frame = 0
Query:   42 FMTPTLCFALAYENLLLVVPNTPFCTLSAQRFGWIMNAVIPPLFLVASFETGYAVHKHRSVKYLGINFDEGKRVDTAPCS------------WFLRNLVRLIALALFFMGLIVNFSVFFPDASD-NAGMSGYLGLGRGDVAHYYVSIVPSLVFSLVTLVIAATIKRYGRHSTLLIPRSC--GWNWLLLGSLLQTAGQFPASTALYPSTSMAGQVVLLISLLLTHRLVLLDMGEAAKITEFLRRQKAVQQR 276
             +TP +CF+L ++N ++          S Q      +A + P+ L+  +E  Y VHKH+SV + GI+F+ G R   + C+            W+L   +R I   +    L++N  V +   SD    ++    L   + AH   +I+P++V   + L I   +  YG + + ++  +C   W W+L+G++    G +   + +Y  +S AG++ ++ +++   R V  DM +  +  EF+  + A  +R
Sbjct:   46 LLTPFICFSLVFDNAIMATTGIDRRRASTQVM-LAFHACVTPMLLLVCYELAYLVHKHKSVNFCGISFESGHRERGSSCANAGAAASLAKRRWWLSTCLRFIVWLMACALLVLNLLVAYRWTSDLTPEVTSMYELQGDNAAHAVCAILPAVVLVALALYIGIRLWNYGTNYSYMVHATCFNPWIWMLVGAVALLIG-YVMPSPIYALSSNAGELTMMATIVRMLREVHHDMQQGLQFGEFIDPEGAAARR 293          
The following BLAST results are available for this feature:
BLAST of EWM30603.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113275|gb|EWM30603.1|0.000e+0100.00hypothetical protein Naga_100129g14 [Nannochlorops... [more]
gi|585113274|gb|EWM30602.1|0.000e+0100.00hypothetical protein Naga_100129g14 [Nannochlorops... [more]
gi|299472212|emb|CBN77182.1|2.131e-3231.11conserved unknown protein [Ectocarpus siliculosus][more]
gi|397639525|gb|EJK73616.1|5.408e-1831.51hypothetical protein THAOC_04749 [Thalassiosira oc... [more]
gi|695433534|ref|XP_009531201.1|1.422e-1725.39hypothetical protein PHYSODRAFT_562300 [Phytophtho... [more]
gi|1214705596|gb|OWZ17268.1|6.171e-1526.80hypothetical protein PHMEG_0008807 [Phytophthora m... [more]
gi|970663820|gb|KUG00896.1|1.103e-1424.80hypothetical protein AM587_10009962 [Phytophthora ... [more]
gi|570949596|gb|ETP14853.1|1.259e-1424.80hypothetical protein F441_10254 [Phytophthora para... [more]
gi|566022107|gb|ETI45018.1|1.345e-1424.80hypothetical protein F443_10317 [Phytophthora para... [more]
gi|301108279|ref|XP_002903221.1|1.437e-1424.80conserved hypothetical protein [Phytophthora infes... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna70rna70Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications