rna7, rna7 (mRNA) Nannochloropsis gaditana

Overview
Namerna7
Unique Namerna7
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length873
Alignment locationCM002455.1:20123..22970 +

Link to JBrowse

Properties
Property NameValue
Productgcn5-like n-acetyltransferase
Orig transcript idgnl|cribi|Naga_100091g9.5713.mrna
Orig protein idgnl|cribi|Naga_100091g9.5713
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:20123..22970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100091g9gene7Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7rna7-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30664.1cds7Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7 ID=rna7|Name=rna7|organism=Nannochloropsis gaditana|type=mRNA|length=873bp
ATGCTCATCTTTTCATACCTGGAACGCCTGAGCGCTAAAACACCAGCAAG
TCGCGCGTCCTCTTCGATCCTGACTATCATGTCAGCTGAGACAAGGGGCG
ATGGAACGACACGAAATTTAGCCCGTGAATTCAAGCGCGCTTACCTCTCC
TCGTACAATCTCGCGCAAACTGGGCTGTGGGCTACTGTGTTGGCTTTGAC
CCTATCTGCCTTGTTTTCAAATGTGCACGACTATGGCGGTGTCTGGGCTG
CTGCGGGTCCTGCGGCAAAATTGGCTGTTGCTGGGGCTTGGTTGGAGCTG
GTGCACGTGGCCCTTGGCTTGGCCGGAGGCAGCGTCTCCTCCGCGTTCTG
GCAGAACTTCGGGCGGACATTCGTCCTGTTCGCGATCGTGGACTCTTTCC
AGACCCCGCGGACAGTGGCTTGGCTCCCAGCCCTGCTGGTTGCTTGGTCA
TGCGGCGAGCTGGTCCGCTACCCCTTCTACCTCATGGGCAGTAATGCCCC
GCCTGCCCTCGTCTGGCTCCGTTACTCGGCCTTCCTCCTCCTGTACCCGG
TCGGTATGGCCTCGGAGGTGGCGCTGCTCTTCCTCACCCTCACGGAGGCG
CGAGAGGCTGTCGCGAGGGAAGATAAATTCTGCCTCCGATTGCCAGGCAA
AGGCGCAAGTTGGCGGATACTGAATTTTTATTACTTCCTTCTATTCGGGC
TGTTGGTGCTCTACCCCTTTGCCATTCCCTACATGTACAGTTACATGCTT
CGACAGCGTAGGAAACGACTTAATGTCACAGGAAGGGAAGATGCTATAAC
AAGGATGTCAGGAGCAGCCAAATTGCCGGCTGAGATGGTTTCGAGCAGCA
AAAAAAGCCGAAAAGCAGATTGA
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protein sequence of rna7

>rna7-protein ID=rna7-protein|Name=rna7|organism=Nannochloropsis gaditana|type=polypeptide|length=356bp
MSAPLSPSLLPPRGLVSEEEVQAWATFVAGSFAFKKPVPPTRDHFLRHFR
NDPYSHDKACIRVIMEDDAQNEIVGSARLVLRPLSTGGWAAGVAEVCVAP
RQRGKGLAQRLVQNVLATAASLVSPKPSLSMLHCSPSLVSMYAGMGYVPV
STRWVHVWLKSTLMEQAEGVSVQCLDFDASNSAEVLQEMAVLPSAVVEVI
ARDVPYFLAWTRNEVLAAPHTDVWGVRAKSGKLLAYCSLRRRVDGSMMLV
DMRVSVGEGIVAIIRDVINAVAKSSATSTLDGASSTDEIELCIPAVLVEK
DAMTGLCVEEGETDPGWMYKPLADKLTSEEWQTFIARYRAQEGANVAHLV
WPIDHF
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mRNA from alignment at CM002455.1:20123..22970+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7 ID=rna7|Name=rna7|organism=Nannochloropsis gaditana|type=mRNA|length=2848bp|location=Sequence derived from alignment at CM002455.1:20123..22970+ (Nannochloropsis gaditana)
TTTCACGGAGGGGGTAACATGGGTCATGTAGTCCATGCTTGTGAACGCTC
CTACAATATTACACTAATTGCCTGCGGTACTACGCCGACAAAATCGAAAT
CCAACAGATGTGAGGAGAGATTTTTCACCCTGCCCGCTAATTTCTCTCCA
CACGAACCCAACCTGAAAACAGGCCAATGCGTTTCTCGGGAACTGTCTTG
GATATGTCAAACATGATGATAGGACAGACAGTCAGCCGCGTAAAAGCCCT
TCAGAGGAGTATAGCAAATTCATCTTCATTTATTTTACGGCTGTAAAGAC
TTTTGAAACACATCCGCCGACATGTCAGCCCCTCTGTCACCCTCTTTGCT
CCCCCCTCGAGGCCTGGTGTCTGAAGAGGAGGTCCAGGCATGGGCAACGT
TCGTGGCAGGCAGCTTTGCCTTTAAGAAACCCGTTCCACCCACTCGAGAT
CACTTCCTGCGACACTTTCGTAATGACCCGTATTCGCATGACAAGGCATG
TATTCGAGTTATCATGGAGGATGACGCGCAAAATGAAATAGTGGGCTCAG
CACGCCTAGTGTTGCGGCCCCTTTCTACGGGAGGATGGGCGGCAGGGGTT
GCTGAAGTCTGCGTCGCACCACGGCAGCGAGGGAAAGGCTTAGCCCAGCG
TCTTGTTCAAAATGTGCTGGCCACAGCGGCATCTTTGGTATCTCCTAAAC
CCAGTCTGAGCATGTTGCATTGTTCTCCATCGTTAGTTTCGATGTACGCC
GGGATGGGATATGTACCGGTGTCCACACGATGGGTGCATGTCTGGTTGAA
AAGCACGCTGATGGAGCAGGCCGAGGGCGTTAGCGTGCAGTGCTTGGATT
TCGATGCGAGCAACAGCGCGGAGGTGCTCCAAGAAATGGCTGTCCTCCCA
TCTGCAGTCGTTGAAGTCATTGCACGGGACGTTCCTTACTTCCTTGCGTG
GACTAGAAACGAGGTCCTGGCGGCACCTCACACGGACGTTTGGGGCGTAC
GGGCGAAAAGCGGAAAGCTGCTTGCATACTGCTCTTTGCGGCGTCGAGTC
GACGGCTCCATGATGCTGGTGGATATGCGCGTCTCTGTCGGCGAGGGCAT
CGTAGCCATCATCCGCGACGTAATCAACGCAGTCGCAAAATCTTCCGCTA
CATCGACTCTTGATGGTGCGTCTTCTACGGACGAAATAGAGCTGTGCATA
CCTGCTGTTCTCGTCGAGAAGGATGCTATGACAGGCTTGTGcgtcgagga
aggggagacggaTCCAGGATGGATGTACAAGCCCCTTGCAGACAAGCTAA
CTTCTGAGGAATGGCAAACGTTCATAGCGCGGTACAGAGCTCAGGAGGGA
GCTAACGTTGCACACTTGGTCTGGCCAATAGACCATTTTTGAACGTGATG
ACATGTGAAGTCGACTGTAAAAATTAAACAAACTGTGTGACTTTGCCCCA
CGTTCGATGTCGTAATTTTGAAGGGCAATGTGGTTCCGTATATAGCAGCT
CATACGACTTATTTCGCTGAAAATGTGAGTGCATATGGCCTCTGTCCCCC
TGCTGCCGCTCAACAACCTGCCACATCTCACCAGtctgccccctccatgc
ATCGTATGCCTCTTGTTGTTTGGAGGACTTGCAAAGCGTTGCGACCTCGT
GCACGAATGGCTCGGTTCTGATCGAGGAAGATGTTGAGGAGCTTGGGGCA
GTACAATCcaatcttttcctcctccgttcgcccgccccccatgCCAGACT
CATGCTCTCCAGCGCAGGCTAAAAAGTCCCTGAATGCACAAGCTCCATCA
TCACCGATCCTATTCTCCTTCAAATCTAAAGTTTCTAGGAGCAATCTTGG
ACGAACGTGACTTATCCTCTCTTCGTCACGGCCTCCATCTGACAGATGCA
TGGCGAAGGCGAGTGCCCCTTCGTTTCCTATGGCGTTGGACGCTAAGTCT
AGCTCCCGCAGAACCACCATGCCCTCCAAACAGCCAGCTACGGCTCTTGC
TCCTGCGTCTCCAATCTTATTATAGCCTAGGTACAATTCGTCCAGACACG
GCATCCCTCCACCGGCAGATATCCCTTCCGCCAATGAGGCCACGCCCCGA
TCACCTAATCGATTCAAGTGCAAATCTAGTTTTCGCAACCGTTTAAGAGC
TGGGGCTGCGAGGGCATCGCCGATGTACATAGCCGACAAGTGCCCCAGAT
TGTTTTGTGCGAGGCTCAGGGACGTCAAGAGAGCGCTAGGCACACCTGTT
TTCAACACCTGGCAAAGAACACCTACAGAATCTCGAGCGCCCCCGACAGC
GAGCCTGCCTATCGCTTCGTCTATTGCCATGCCAACATCGTCGTCACTAT
CACACGTAATTTGATTGGCCCGAATGTAGATACCTCGTAGGTGAGAATGA
AAGCCTCCTTGTCCGAGTGCCTCGGCCAAAGCAAGACAGCCCTCACTTCC
GAGATTGTTATCCCATAAACTCAGAGACGATACGCACTGAAATACACCAT
TTACTGCAGCAAGCCTTCCTAAAGTAAGCAGGATACTAGGAGTGAGTTCT
GCTGAAGAGAGATCCAGAATTTGGAGTGCTCGACAGGGCGGTAGATGACG
GGCAATTAGGTCCTCTACTACAGCCGCAGGAAGAGGCTTGGTGGGCCGAA
AAAATGACAGTCCATTGCCCACAAGATTGCTTCTGCCATTTCCGTCCTTG
AAAGCTAGATTACGGGCCGTGCTGACCAAGTATGAAATGTCTCTTGGCCA
AAGATAGGCACAAAGTTCATAAAGAACAGCAGCGGGCAGATTTGGCAATG
TCGTTGCAGTTATTTGCCCACTCTCTCGGCCAATGTCACGTTCTTTCA
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Coding sequence (CDS) from alignment at CM002455.1:20123..22970+

>rna7 ID=rna7|Name=rna7|organism=Nannochloropsis gaditana|type=CDS|length=1071bp|location=Sequence derived from alignment at CM002455.1:20123..22970+ (Nannochloropsis gaditana)
ATGTCAGCCCCTCTGTCACCCTCTTTGCTCCCCCCTCGAGGCCTGGTGTC
TGAAGAGGAGGTCCAGGCATGGGCAACGTTCGTGGCAGGCAGCTTTGCCT
TTAAGAAACCCGTTCCACCCACTCGAGATCACTTCCTGCGACACTTTCGT
AATGACCCGTATTCGCATGACAAGGCATGTATTCGAGTTATCATGGAGGA
TGACGCGCAAAATGAAATAGTGGGCTCAGCACGCCTAGTGTTGCGGCCCC
TTTCTACGGGAGGATGGGCGGCAGGGGTTGCTGAAGTCTGCGTCGCACCA
CGGCAGCGAGGGAAAGGCTTAGCCCAGCGTCTTGTTCAAAATGTGCTGGC
CACAGCGGCATCTTTGGTATCTCCTAAACCCAGTCTGAGCATGTTGCATT
GTTCTCCATCGTTAGTTTCGATGTACGCCGGGATGGGATATGTACCGGTG
TCCACACGATGGGTGCATGTCTGGTTGAAAAGCACGCTGATGGAGCAGGC
CGAGGGCGTTAGCGTGCAGTGCTTGGATTTCGATGCGAGCAACAGCGCGG
AGGTGCTCCAAGAAATGGCTGTCCTCCCATCTGCAGTCGTTGAAGTCATT
GCACGGGACGTTCCTTACTTCCTTGCGTGGACTAGAAACGAGGTCCTGGC
GGCACCTCACACGGACGTTTGGGGCGTACGGGCGAAAAGCGGAAAGCTGC
TTGCATACTGCTCTTTGCGGCGTCGAGTCGACGGCTCCATGATGCTGGTG
GATATGCGCGTCTCTGTCGGCGAGGGCATCGTAGCCATCATCCGCGACGT
AATCAACGCAGTCGCAAAATCTTCCGCTACATCGACTCTTGATGGTGCGT
CTTCTACGGACGAAATAGAGCTGTGCATACCTGCTGTTCTCGTCGAGAAG
GATGCTATGACAGGCTTGTGcgtcgaggaaggggagacggaTCCAGGATG
GATGTACAAGCCCCTTGCAGACAAGCTAACTTCTGAGGAATGGCAAACGT
TCATAGCGCGGTACAGAGCTCAGGAGGGAGCTAACGTTGCACACTTGGTC
TGGCCAATAGACCATTTTTGA
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Synonyms
Publications