rna6999, rna6999 (mRNA) Nannochloropsis gaditana

Overview
Namerna6999
Unique Namerna6999
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1089
Alignment locationCM002470.1:209603..211084 -

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Properties
Property NameValue
ProductPUB domain protein
Orig transcript idgnl|cribi|Naga_100030g21.4161.mrna
Orig protein idgnl|cribi|Naga_100030g21.4161
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:209603..211084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g21gene6765Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6999rna6999-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23664.1cds6983Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6999 ID=rna6999|Name=rna6999|organism=Nannochloropsis gaditana|type=mRNA|length=1089bp
ATGGAGGGGGCGCAGGACTTGAACAAAGCTGCAGGAACTCACTACGGTCT
AGCGGTAGCTGAGGATGGAGCGGACAAGGAGCAAGTCAGGGAGAAACAGA
AAGAGACAGCTACCGAAGGTTGTAGCGATACTATGTCAACAACCATGCTT
CCTCAGAGTGTGGCGAGCGTGCTGCAGAAGATAACAAAGTGGAAGGACTA
CGCGAACTACGGGAATCCCGTTGGCGAATCACGAGTTATTCCCATGAAAA
CACCATTGACCCTGGAGTTGCAAGGAGCACACTTCCCGCCAGCCACTTCT
TCATCACCGTCTCATACGCCTAATACGGAGGTGACTGGCTCGGGCGAGAT
CTCAAGTAAGCCTGAGGCGGACTTTCAGGTCCACACCATTCAGAAATTCG
TACAGGAGCAAGCGATCTTAGGGCGCACCATCGGGCTTGTGGTAGATCTA
TCAAATCATGAATGTTTATACGAGGAAGACCTCAAACGCGATTGTCCGCA
TGTCAGTTATGAGCATTTTTTGTTCGTGGCCAAAAACATCCCAGACCGAA
ACGGGTGCCGGGACGTGGGGCGGTGCATCACCGGCTATCTGGCCGGGAAC
CCTGAGCACTACGTGGCTATACACTGCAGCTACGGGTGGAATAGAACGGG
ATACATTTGCGCCGCGTATTTGGTGGAGGAACTTAGGTATACCGCCTCCG
ATGCCTTGGCGGCCTTTGCCCAAGCCCGCCCGCCGGGAATCAAGCACGAG
CACTTCCTGAGCGAGTTCTTGGCACGCTACACTGAAAAGACCGAGAAACC
CCCGAGGCAAGAAGGAGCGAGGACAAAAAGCGCGTCATCTGTTGCGGAAA
CAGCACGAGGACAGAGGGAGATCAACAACGAGACGTTAGGCCCCTCGCTA
GGACAGAAAGAAGGTTCATGGAGACGCCATTCGGAAGGAAGTATACTGCA
GGATAACGAAGCTGCACATGAGAGGAGCGAAATCGCAGGAGACACATTGA
GCTGTGTCGGGGCAAACTCAGTTATAAAATGGTCCAATTCCAGATTAACG
CATGAAAAAGAAGCCTGCATATGTAAGGGAACGTTCTGA
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protein sequence of rna6999

>rna6999-protein ID=rna6999-protein|Name=rna6999|organism=Nannochloropsis gaditana|type=polypeptide|length=418bp
MNYLKGALGLKKDKGNVLGNEVNTSRPSGPSNSAPTRETRSGSFSTYDAV
FDGNDALLGMTIACSQTGIPVVGSLVSGGAASRKGVHIGDIVMSVDGNPV
TSYESLEVALCAMERPVTFSFHRSGKSDLVQPVARPTLPPSDESGDVERR
RRILTAAEERSRAWDRKVQKAGGNHRGASKKSGEGLDRFGANDDEATKAQ
VAQIKKFEAAQTAALGYNPYESHSMSRAQALARIELAGPTPSGSNSRTSA
AALSPLNSQPHPPPSWTPTSLSPSLSGDRRPFVAPLSQEELESPEAFQAG
EEADSAMALMLDRPLPAWRTAASTVLTILGNVLADPAQEKFRRVRLQNAA
FQSKVVAVPGAVDMLHAAGFCYTMEDQETFLSLPGPALEVPLRARVIYYR
IQQVLEDTQDPLELPPLS
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mRNA from alignment at CM002470.1:209603..211084-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6999 ID=rna6999|Name=rna6999|organism=Nannochloropsis gaditana|type=mRNA|length=1482bp|location=Sequence derived from alignment at CM002470.1:209603..211084- (Nannochloropsis gaditana)
CAGTTTGTATGAATTACTTGAAAGGCGCTTTAGGTTTGAAAAAGGACAAG
GGAAACGTTCTCGGCAACGAAGTCAACACCAGTAGGCCGAGCGGGCCTAG
CAACAGCGCCCCCACCCGAGAAACTCGTAGTGGCAGCTTTTCCACATACG
ATGCAGTATTCGATGGCAACGATGCGTTGTTGGGCATGACAATAGCATGC
TCCCAGACCGGGATTCCGGTGGTGGGAAGCCTTGTCTCTGGTGGTGCAGC
CAGCCGCAAAGGAGTACATATTGGCGATATTGTGATGAGCGTGGATGGTA
ATCCCGTGACCAGCTACGAAAGTTTGGAGGTCGCTCTTTGTGCCATGGAG
CGTCCAGTAACGTTTTCCTTCCATCGCTCGGGAAAGTCAGATCTAGTTCA
ACCGGTGGCGCGTCCAACCCTTCCACCCAGCGATGAGTCTGGCGATGTTG
AACGGCGGAGGAGGATTTTGACCGCGGCGGAGGAGCGCAGCAGAGCGTGG
GACCGGAAAGTTCAAAAAGCCGGTGGCAATCACAGGGGTGCTTCCAAGAA
GAGCGGGGAGGGATTGGACAGATTTGGGGCAAACGATGATGAGGCCACCA
AGGCCCAGGTCGCCCAGATCAAAAAATTTGAAGCGGCTCAGACAGCGGCC
TTGGGATATAACCCTTACGAATCGCACAGCATGTCGCGTGGTAAGATATG
GAGCAAGATGGGTCGTAGTGAGGCGCGGAATGTTTAGAGATAAGTTTAGA
GCCCCATATAGCGTCTGTCGCTTGCTTTCACCTGATGACACTTTTACCCT
GATCACCCCTACAGCACAAGCGCTGGCACGCATAGAATTAGCGGGCCCGA
CACCATCAGGAAGCAATTCTCGGACCTCAGCGGCAGCCCTGTCGCCCCTG
AACAGTCAGCCCCATCCCCCGCCCTCTTGGACCCCCACCTCCCTGTCGCC
GTCCCTCTCCGGCGACCGAAGGCCCTTCGTTGCGCCCCTCAGCCAGGAGG
AGCTCGAGAGCCCCGAGGCCTTCCAGGCCGGCGAGGAGGCTGACTCAGCC
ATGGCCCTCATGCTGGACCGGCCCTTGCCCGCATGGAGAACCGCCGCCTC
CACGGTCCTCACCATCCTGGGCAACGTCTTGGCCGATCCGGCACAGGAGA
AGTTCCGCCGAGTGCGCCTGCAGAATGCGGCTTTCCAGAGCAAGGTGGTG
GCTGTCCCTGGTGCCGTGGACATGCTGCATGCTGCGGGCTTCTGCTACAC
GATGGAGGACCAAGAGACCTTTCTCTCCCTGCCCGGCCCGGCTTTGGAGG
TGCCCCTGCGTGCTCGCGTGATTTATTACCGCATCCAGCAGGTGTTAGAG
GACACGCAGGACCCCCTAGAGCTCCCGCCCTTGTCTTGACTAGAGCGTGC
ACCCGTGGAAATTTGAACGTTTACTGTGCTCCAACACGTTCGCATGTTTA
TTGAATAAGGAAAGCAATGGTGAAGCTATGTG
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Coding sequence (CDS) from alignment at CM002470.1:209603..211084-

>rna6999 ID=rna6999|Name=rna6999|organism=Nannochloropsis gaditana|type=CDS|length=2514bp|location=Sequence derived from alignment at CM002470.1:209603..211084- (Nannochloropsis gaditana)
CACAAGCGCTGGCACGCATAGAATTAGCGGGCCCGACACCATCAGGAAGC
AATTCTCGGACCTCAGCGGCAGCCCTGTCGCCCCTGAACAGTCAGCCCCA
TCCCCCGCCCTCTTGGACCCCCACCTCCCTGTCGCCGTCCCTCTCCGGCG
ACCGAAGGCCCTTCGTTGCGCCCCTCAGCCAGGAGGAGCTCGAGAGCCCC
GAGGCCTTCCAGGCCGGCGAGGAGGCTGACTCAGCCATGGCCCTCATGCT
GGACCGGCCCTTGCCCGCATGGAGAACCGCCGCCTCCACGGTCCTCACCA
TCCTGGGCAACGTCTTGGCCGATCCGGCACAGGAGAAGTTCCGCCGAGTG
CGCCTGCAGAATGCGGCTTTCCAGAGCAAGGTGGTGGCTGTCCCTGGTGC
CGTGGACATGCTGCATGCTGCGGGCTTCTGCTACACGATGGAGGACCAAG
AGACCTTTCTCTCCCTGCCCGGCCCGGCTTTGGAGGTGCCCCTGCGTGCT
CGCGTGATTTATTACCGCATCCAGCAGGTGTTAGAGGACACGCAGGACCC
CCTAGAGCTCCCGCCCTTGTCTTGAATGAATTACTTGAAAGGCGCTTTAG
GTTTGAAAAAGGACAAGGGAAACGTTCTCGGCAACGAAGTCAACACCAGT
AGGCCGAGCGGGCCTAGCAACAGCGCCCCCACCCGAGAAACTCGTAGTGG
CAGCTTTTCCACATACGATGCAGTATTCGATGGCAACGATGCGTTGTTGG
GCATGACAATAGCATGCTCCCAGACCGGGATTCCGGTGGTGGGAAGCCTT
GTCTCTGGTGGTGCAGCCAGCCGCAAAGGAGTACATATTGGCGATATTGT
GATGAGCGTGGATGGTAATCCCGTGACCAGCTACGAAAGTTTGGAGGTCG
CTCTTTGTGCCATGGAGCGTCCAGTAACGTTTTCCTTCCATCGCTCGGGA
AAGTCAGATCTAGTTCAACCGGTGGCGCGTCCAACCCTTCCACCCAGCGA
TGAGTCTGGCGATGTTGAACGGCGGAGGAGGATTTTGACCGCGGCGGAGG
AGCGCAGCAGAGCGTGGGACCGGAAAGTTCAAAAAGCCGGTGGCAATCAC
AGGGGTGCTTCCAAGAAGAGCGGGGAGGGATTGGACAGATTTGGGGCAAA
CGATGATGAGGCCACCAAGGCCCAGGTCGCCCAGATCAAAAAATTTGAAG
CGGCTCAGACAGCGGCCTTGGGATATAACCCTTACGAATCGCACAGCATG
TCGCGTGCACAAGCGCTGGCACGCATAGAATTAGCGGGCCCGACACCATC
AGGAAGCAATTCTCGGACCTCAGCGGCAGCCCTGTCGCCCCTGAACAGTC
AGCCCCATCCCCCGCCCTCTTGGACCCCCACCTCCCTGTCGCCGTCCCTC
TCCGGCGACCGAAGGCCCTTCGTTGCGCCCCTCAGCCAGGAGGAGCTCGA
GAGCCCCGAGGCCTTCCAGGCCGGCGAGGAGGCTGACTCAGCCATGGCCC
TCATGCTGGACCGGCCCTTGCCCGCATGGAGAACCGCCGCCTCCACGGTC
CTCACCATCCTGGGCAACGTCTTGGCCGATCCGGCACAGGAGAAGTTCCG
CCGAGTGCGCCTGCAGAATGCGGCTTTCCAGAGCAAGGTGGTGGCTGTCC
CTGGTGCCGTGGACATGCTGCATGCTGCGGGCTTCTGCTACACGATGGAG
GACCAAGAGACCTTTCTCTCCCTGCCCGGCCCGGCTTTGGAGGTGCCCCT
GCGTGCTCGCGTGATTTATTACCGCATCCAGCAGGTGTTAGAGGACACGC
AGGACCCCCTAGAGCTCCCGCCCTTGTCTTGAATGAATTACTTGAAAGGC
GCTTTAGGTTTGAAAAAGGACAAGGGAAACGTTCTCGGCAACGAAGTCAA
CACCAGTAGGCCGAGCGGGCCTAGCAACAGCGCCCCCACCCGAGAAACTC
GTAGTGGCAGCTTTTCCACATACGATGCAGTATTCGATGGCAACGATGCG
TTGTTGGGCATGACAATAGCATGCTCCCAGACCGGGATTCCGGTGGTGGG
AAGCCTTGTCTCTGGTGGTGCAGCCAGCCGCAAAGGAGTACATATTGGCG
ATATTGTGATGAGCGTGGATGGTAATCCCGTGACCAGCTACGAAAGTTTG
GAGGTCGCTCTTTGTGCCATGGAGCGTCCAGTAACGTTTTCCTTCCATCG
CTCGGGAAAGTCAGATCTAGTTCAACCGGTGGCGCGTCCAACCCTTCCAC
CCAGCGATGAGTCTGGCGATGTTGAACGGCGGAGGAGGATTTTGACCGCG
GCGGAGGAGCGCAGCAGAGCGTGGGACCGGAAAGTTCAAAAAGCCGGTGG
CAATCACAGGGGTGCTTCCAAGAAGAGCGGGGAGGGATTGGACAGATTTG
GGGCAAACGATGATGAGGCCACCAAGGCCCAGGTCGCCCAGATCAAAAAA
TTTGAAGCGGCTCAGACAGCGGCCTTGGGATATAACCCTTACGAATCGCA
CAGCATGTCGCGTG
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Synonyms
Publications