rna6998, rna6998 (mRNA) Nannochloropsis gaditana

Overview
Namerna6998
Unique Namerna6998
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length918
Alignment locationCM002470.1:208260..209486 +

Link to JBrowse

Properties
Property NameValue
ProductProtein-tyrosine phosphatase
Orig transcript idgnl|cribi|Naga_100030g20.4202.mrna
Orig protein idgnl|cribi|Naga_100030g20.4202
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:208260..209486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g20gene6764Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6998rna6998-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23705.1cds6982Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6998 ID=rna6998|Name=rna6998|organism=Nannochloropsis gaditana|type=mRNA|length=918bp
TCCATGCTCCACCTTGACCGCGTCACGGTCGGCAATCCTCCGTGGCAACA
GCTTGTGATTGATTTCTCCCTCTACATTTTCAGATTGCCTGGTAAATTTT
GCCTGGGTACAAGATCTCCATGGCGCGTAGGATACTCCTTCCATCTACAG
TTGCCCTCCTATTCGGCCTCGCCTTTTTGCACCTGAAGAACGTTTGCGCT
TTTCTTCCTAGCGGCCGCAGTCGGTATTTACCTTTTAGATGCACAACACA
TATACTTCGTAAGAATTGCGTAAGGAGTGGCAATTTTGCGCCCATCTACG
CGTCGGCCGATGAAAGTGAAAGCGGTCCAGCAACGGAGAAGCGAGAATTA
GACCGTCTCTTCGAGGAGGTGGAAAAAGCAAATCAAAGCAACGGCCTAAA
AGAAGCCATCAAATCAACTGTAAGCAGGTTACCATTGCCAAGTGCAGGTT
CCAAAGCCGTCCGCACGGAGCCCGACAGGCCATTTCGCTTTCCTGCTTAC
GGCTTCCTGGTCATGTCCATGCTGCTAGGCATCAGCTTTACGGGCTCCTT
GACAGAGCTGGCTGGGGGTAAGCCACTTCTGGGACAGACTGCCACGATAG
CCGTCATAGCAACAGCAGGTCCTGGCTTCGTAGCTTCCTTTGTGGTGGCG
GTGAAACGCTACAATGAGGAGAAGGAGGAGGACAATGCGCGCCTGGAGGA
GGAGGAGAGACAAGACGAACTCGCCCGCCAACGGGCGCTGCAAGGTCCTG
TGCCTCTTGAGGCTTTGAAAGAGAAGGAGTAGGTGCAGTATTAGGCCGGC
TCAAAGTATTGTTTCAATTGAGGAGGGCTTGCTTGTGAACTAATCAGTAA
GCGTTCAAAAAGAAGAGAGATGAACTCGTTGCTTACTTGCTTTGTGCAGT
TACTTCCTATGGGAAGGG
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protein sequence of rna6998

>rna6998-protein ID=rna6998-protein|Name=rna6998|organism=Nannochloropsis gaditana|type=polypeptide|length=362bp
MEGAQDLNKAAGTHYGLAVAEDGADKEQVREKQKETATEGCSDTMSTTML
PQSVASVLQKITKWKDYANYGNPVGESRVIPMKTPLTLELQGAHFPPATS
SSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDL
SNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGN
PEHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHE
HFLSEFLARYTEKTEKPPRQEGARTKSASSVAETARGQREINNETLGPSL
GQKEGSWRRHSEGSILQDNEAAHERSEIAGDTLSCVGANSVIKWSNSRLT
HEKEACICKGTF
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mRNA from alignment at CM002470.1:208260..209486+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6998 ID=rna6998|Name=rna6998|organism=Nannochloropsis gaditana|type=mRNA|length=1227bp|location=Sequence derived from alignment at CM002470.1:208260..209486+ (Nannochloropsis gaditana)
atggagggggcgcagGACTTGAACAAAGCTGCAGGAACTCACTACGGTCT
AGCGGTAGCTGAGGATGGAGCGGACAAGGAGCAAGTCAGGGAGAAACAGA
AAGAGACAGCTACCGAAGGTTGTAGCGATACTATGTCAACAACCATGCTT
CCTCAGAGTGTGGCGAGCGTGCTGCAGAAGATAACAAAGTGGAAGGACTA
CGCGAACTACGGGAATCCCGTTGGCGAATCACGAGTTATTCCCATGAAAA
CACCATTGACCCTGGAGTTGCAAGGAGCACACTTCCCGCCAGCCACTTCT
TCATCACCGTCTCATACGCCTAATACGGAGGTGACTGGCTCGGGCGAGAT
CTCAAGTAAGCCTGAGGCGGACTTTCAGGTCCACACCATTCAGAAATTCG
TACAGGAGCAAGCGATCTTAGGGCGCACCATCGGGCTTGTGGTAGATCTA
TCAAATCATGAATGTTTATACGAGGAAGACCTCAAACGCGATTGTCCGCA
TGTCAGTTATGAGCATTTTTTGTTCGTGGCCAAAAACATCCCAGACCGAA
ACGGGTGCCGGGACGTGGGGCGGTGCATCACCGGCTATCTGGCCGGGAAC
CCTGAGCACTACGTGGCTATACACTGCAGCTACGGGTGGAATAGAACGGG
ATACATTTGCGCCGCGTATTTGGTGGAGGAACTTAGGTATACCGCCTCCG
ATGCCTTGGCGGCCTTTGCCCAAGCCCGCCCGCCGGGAATCAAGCACGAG
CACTTCCTGAGCGAGTTCTTGGCACGCTACACTGAAAAGACCGAGAAACC
CCCGAggcaagaaggagcgaggacaaAAAGCGCGTCATCTGTTGCGGAAA
CAGCACGAGGACAGAGGGAGATCAACAACGAGACGTTAGGCCCCTCGCTA
GGACAGAAAGTGCTGCTTGCTCTGGACGAGGCttcgagggaaggaggggg
cgcaaGTCGGCGTGCGGGGGTTTCCAGGGGCTGCCGCCTGTCATAGTCGG
CTTGGAAAATGCCCGCATTCGTCTTGTAAGTATTCCACTGTACGTAGGAA
GGTTCATGGAGACGCCATTCGGAAGGAAGTATACTGCAGGATAACGAAGC
TGCACATGAGAGGAGCGAAATCGCAGGAGACACATTGAGCTGTGTCGGGG
CAAACTCAGTTATAAAATGGTCCAATTCCAGATTAACGCATGAAAAAGAA
GCCTGCATATGTAAGGGAACGTTCTGA
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Coding sequence (CDS) from alignment at CM002470.1:208260..209486+

>rna6998 ID=rna6998|Name=rna6998|organism=Nannochloropsis gaditana|type=CDS|length=2178bp|location=Sequence derived from alignment at CM002470.1:208260..209486+ (Nannochloropsis gaditana)
atggagggggcgcagGACTTGAACAAAGCTGCAGGAACTCACTACGGTCT
AGCGGTAGCTGAGGATGGAGCGGACAAGGAGCAAGTCAGGGAGAAACAGA
AAGAGACAGCTACCGAAGGTTGTAGCGATACTATGTCAACAACCATGCTT
CCTCAGAGTGTGGCGAGCGTGCTGCAGAAGATAACAAAGTGGAAGGACTA
CGCGAACTACGGGAATCCCGTTGGCGAATCACGAGTTATTCCCATGAAAA
CACCATTGACCCTGGAGTTGCAAGGAGCACACTTCCCGCCAGCCACTTCT
TCATCACCGTCTCATACGCCTAATACGGAGGTGACTGGCTCGGGCGAGAT
CTCAAGTAAGCCTGAGGCGGACTTTCAGGTCCACACCATTCAGAAATTCG
TACAGGAGCAAGCGATCTTAGGGCGCACCATCGGGCTTGTGGTAGATCTA
TCAAATCATGAATGTTTATACGAGGAAGACCTCAAACGCGATTGTCCGCA
TGTCAGTTATGAGCATTTTTTGTTCGTGGCCAAAAACATCCCAGACCGAA
ACGGGTGCCGGGACGTGGGGCGGTGCATCACCGGCTATCTGGCCGGGAAC
CCTGAGCACTACGTGGCTATACACTGCAGCTACGGGTGGAATAGAACGGG
ATACATTTGCGCCGCGTATTTGGTGGAGGAACTTAGGTATACCGCCTCCG
ATGCCTTGGCGGCCTTTGCCCAAGCCCGCCCGCCGGGAATCAAGCACGAG
CACTTCCTGAGCGAGTTCTTGGCACGCTACACTGAAAAGACCGAGAAACC
CCCGAggcaagaaggagcgaggacaaAAAGCGCGTCATCTGTTGCGGAAA
CAGCACGAGGACAGAGGGAGATCAACAACGAGACGTTAGGCCCCTCGCTA
GGACAGAAAGAAGGTTCATGGAGACGCCATTCGGAAGGAAGTATACTGCA
GGATAACGAAGCTGCACATGAGAGGAGCGAAATCGCAGGAGACACATTGA
GCTGTGTCGGGGCAAACTCAGTTATAAAATGGTCCAATTCCAGATTAACG
CATGAAAAAGAAGCCTGCATATGTAAGGGAACGTTCTGAatggagggggc
gcagGACTTGAACAAAGCTGCAGGAACTCACTACGGTCTAGCGGTAGCTG
AGGATGGAGCGGACAAGGAGCAAGTCAGGGAGAAACAGAAAGAGACAGCT
ACCGAAGGTTGTAGCGATACTATGTCAACAACCATGCTTCCTCAGAGTGT
GGCGAGCGTGCTGCAGAAGATAACAAAGTGGAAGGACTACGCGAACTACG
GGAATCCCGTTGGCGAATCACGAGTTATTCCCATGAAAACACCATTGACC
CTGGAGTTGCAAGGAGCACACTTCCCGCCAGCCACTTCTTCATCACCGTC
TCATACGCCTAATACGGAGGTGACTGGCTCGGGCGAGATCTCAAGTAAGC
CTGAGGCGGACTTTCAGGTCCACACCATTCAGAAATTCGTACAGGAGCAA
GCGATCTTAGGGCGCACCATCGGGCTTGTGGTAGATCTATCAAATCATGA
ATGTTTATACGAGGAAGACCTCAAACGCGATTGTCCGCATGTCAGTTATG
AGCATTTTTTGTTCGTGGCCAAAAACATCCCAGACCGAAACGGGTGCCGG
GACGTGGGGCGGTGCATCACCGGCTATCTGGCCGGGAACCCTGAGCACTA
CGTGGCTATACACTGCAGCTACGGGTGGAATAGAACGGGATACATTTGCG
CCGCGTATTTGGTGGAGGAACTTAGGTATACCGCCTCCGATGCCTTGGCG
GCCTTTGCCCAAGCCCGCCCGCCGGGAATCAAGCACGAGCACTTCCTGAG
CGAGTTCTTGGCACGCTACACTGAAAAGACCGAGAAACCCCCGAggcaag
aaggagcgaggacaaAAAGCGCGTCATCTGTTGCGGAAACAGCACGAGGA
CAGAGGGAGATCAACAACGAGACGTTAGGCCCCTCGCTAGGACAGAAAGA
AGGTTCATGGAGACGCCATTCGGAAGGAAGTATACTGCAGGATAACGAAG
CTGCACATGAGAGGAGCGAAATCGCAGGAGACACATTGAGCTGTGTCGGG
GCAAACTCAGTTATAAAATGGTCCAATTCCAGATTAACGCATGAAAAAGA
AGCCTGCATATGTAAGGGAACGTTCTGA
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Synonyms
Publications