EWM23705.1, cds6982 (CDS) Nannochloropsis gaditana

Overview
NameEWM23705.1
Unique Namecds6982
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002470.1:208260..209168 +
Alignment locationCM002470.1:209307..209486 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23705.1
ProductProtein-tyrosine phosphatase
Orig transcript idgnl|cribi|Naga_100030g20.4202.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:208260..209168 +
CM002470.1supercontigCM002470.1:209307..209486 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004725protein tyrosine phosphatase activity
GO:0016791phosphatase activity
GO:0008138protein tyrosine/serine/threonine phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016311dephosphorylation
GO:0006470protein dephosphorylation
Vocabulary: INTERPRO
TermDefinition
IPR000387Tyr/Dual-sp_Pase
IPR016130Tyr_Pase_AS
IPR029021Prot-tyrosine_phosphatase-like
IPR000340Dual-sp_phosphatase_cat-dom
Homology
BLAST of EWM23705.1 vs. NCBI_GenBank
Match: gi|585104859|gb|EWM23705.1| (Protein-tyrosine phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 758.829 bits (1958), Expect = 0.000e+0
Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 0
Query:    1 MEGAQDLNKAAGTHYGLAVAEDGADKEQVREKQKETATEGCSDTMSTTMLPQSVASVLQKITKWKDYANYGNPVGESRVIPMKTPLTLELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNPEHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARYTEKTEKPPRQEGARTKSASSVAETARGQREINNETLGPSLGQKEGSWRRHSEGSILQDNEAAHERSEIAGDTLSCVGANSVIKWSNSRLTHEKEACICKGTF 362
            MEGAQDLNKAAGTHYGLAVAEDGADKEQVREKQKETATEGCSDTMSTTMLPQSVASVLQKITKWKDYANYGNPVGESRVIPMKTPLTLELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNPEHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARYTEKTEKPPRQEGARTKSASSVAETARGQREINNETLGPSLGQKEGSWRRHSEGSILQDNEAAHERSEIAGDTLSCVGANSVIKWSNSRLTHEKEACICKGTF
Sbjct:    1 MEGAQDLNKAAGTHYGLAVAEDGADKEQVREKQKETATEGCSDTMSTTMLPQSVASVLQKITKWKDYANYGNPVGESRVIPMKTPLTLELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNPEHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARYTEKTEKPPRQEGARTKSASSVAETARGQREINNETLGPSLGQKEGSWRRHSEGSILQDNEAAHERSEIAGDTLSCVGANSVIKWSNSRLTHEKEACICKGTF 362          
BLAST of EWM23705.1 vs. NCBI_GenBank
Match: gi|545368680|ref|XP_005649118.1| (hypothetical protein COCSUDRAFT_62003 [Coccomyxa subellipsoidea C-169] >gi|384251096|gb|EIE24574.1| hypothetical protein COCSUDRAFT_62003 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 173.711 bits (439), Expect = 2.613e-44
Identity = 89/233 (38.20%), Postives = 129/233 (55.36%), Query Frame = 0
Query:   55 ASVLQKITKWKDYANYGNPVGESRVIPMKTPLTLELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNPEHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARYTEKT-------EKPPRQEGARTKSASS 280
            +SVLQK+ KW DY +YG PVG +R +PMKTP++                     +E+  +  +   P+    V TIQ   ++Q   GRTIGL++DLSNHE LY +DL+     + Y H   VAK+ P  N    V +    Y   +P+ Y+AIHC+YG+NRTG++  AYL++  R +  DALA F  ARPPG+KHE F+ E   RY  +        E+ P ++ A  ++A +
Sbjct:   44 SSVLQKLQKWADYQSYGEPVGPTRFLPMKTPMS---------------------SEIIENWSLDEPPQ---HVLTIQSLRKDQQEKGRTIGLIIDLSNHETLYADDLQ-AVDGIQYTHIPLVAKSFPPANAITQVIKTAKSYWKEHPKKYIAIHCAYGFNRTGFVVCAYLIQVCRLSVLDALACFGAARPPGVKHEKFVVELSRRYGTRLPSVPAAPEREPNEDAADVRAAQA 251          
BLAST of EWM23705.1 vs. NCBI_GenBank
Match: gi|255080378|ref|XP_002503769.1| (predicted protein [Micromonas commoda] >gi|226519036|gb|ACO65027.1| predicted protein [Micromonas commoda])

HSP 1 Score: 162.925 bits (411), Expect = 7.780e-44
Identity = 98/268 (36.57%), Postives = 135/268 (50.37%), Query Frame = 0
Query:    1 MEGAQDLNKAAGTHYGLAVAEDG--ADKEQVREKQKETATEGCSDT------MSTTMLPQSVASVLQKITKWKDYANYGNPVGESRVIPMKTPLTLELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNPEHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARY 260
            M G +   +AAG     A    G  AD+E           + C+ T       +T +   +V +VL K+ KW DYA+YG PV  SR IPMKTPL+  L       A  S P+                      + T+ KF+ EQ  LGR +GL++DLSNH+CLY + +  D   V   H   VAK+IP+     +V    + + +  P+ YVAIHC+YG+NRTG++   YL++ L  +A  AL AFA AR PG+KHE F      RY
Sbjct:    1 MSGPEHAPRAAGAEASSAPVASGKVADQEAQARPASSWGDDSCASTSTTSHVFNTAVTENNVPTVLSKLQKWGDYASYGEPVAPSRFIPMKTPLSPTLLAKD---AEESLPN----------------------ILTLPKFLAEQRALGRKVGLIIDLSNHDCLYSDGVPPDLERV---HVRNVAKSIPNVECTDEVIAVASEFWSRRPDEYVAIHCAYGFNRTGFVLCCYLIQALGMSAERALEAFAAAREPGVKHERFREALRRRY 240          
BLAST of EWM23705.1 vs. NCBI_GenBank
Match: gi|612392059|ref|XP_007511550.1| (predicted protein [Bathycoccus prasinos] >gi|412988335|emb|CCO17671.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 162.54 bits (410), Expect = 1.568e-42
Identity = 87/223 (39.01%), Postives = 124/223 (55.61%), Query Frame = 0
Query:   46 STTMLPQSVASVLQKITKWKDYANYGNPVGESRVIPMKTPLTLELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQ-AILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNPEHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARYTEKTEKP 267
            +T  +P   A+VL K+ KW DY + G  VG+++ +PMKTPL+LE                              + E    + T++K + EQ     R + +++DLSNHECLYEED+ ++   V   H   +AK+IP+   C  V R  T +   +PE Y+AIHC+YG+NRTG+I  +YL+E+   TA +AL AFA ARPPG+KHE F     ARY  +  KP
Sbjct:  162 NTDQIPYEKATVLTKLQKWGDYESCGENVGKTKFVPMKTPLSLEFL---------------------------EQMEKYAHILTVEKMLYEQRETKQREVTMIIDLSNHECLYEEDIPKEVHRV---HVRNIAKSIPNIECCSKVMREATKHWKKHPEQYIAIHCAYGFNRTGFIVCSYLIEKENMTAEEALEAFAIARPPGVKHERFQLALKARYPTRGCKP 354          
BLAST of EWM23705.1 vs. NCBI_GenBank
Match: gi|308803466|ref|XP_003079046.1| (mRNA capping enzyme, guanylyltransferase (alpha) subunit (ISS) [Ostreococcus tauri])

HSP 1 Score: 151.754 bits (382), Expect = 6.175e-40
Identity = 93/254 (36.61%), Postives = 136/254 (53.54%), Query Frame = 0
Query:   18 AVAEDGADKEQVREKQKETATEGCSDTMSTTMLPQSVA------SVLQKITKWKDYANYGNPVGESRVIPMKTPLT---LELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNP--EHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARY 260
            AVAED  ++  +     E A EG     + T +P++ A      SVL+K+ KW DY + G+ V  +++IPMKTPL+   +E + AH                                  T+   ++EQ  LGR IGL+VDL+NH+CLYEED+      VS  H   VAK +P    CR   + +  +L+ +   + YVA+HC+YG+NRTG++   +LVE L  +  +AL  FA+ARPPG+KH+HF  E + RY
Sbjct:    7 AVAED--ERPVMPRVSDERAREGVE---AGTSMPETGAVDAEAPSVLKKLQKWGDYESCGDVVRGTKLIPMKTPLSARYVEDRCAH--------------------------------ALTMDILLREQRALGREIGLIVDLTNHDCLYEEDVP---ASVSRTHVRNVAKTVPSVGDCRRASKVVNDFLSSDAGKDRYVAVHCAYGFNRTGFMICCHLVETLGVSPEEALELFAEARPPGLKHQHFRCELIERY 220          
BLAST of EWM23705.1 vs. NCBI_GenBank
Match: gi|693500512|emb|CEF97757.1| (Protein-tyrosine phosphatase, active site [Ostreococcus tauri])

HSP 1 Score: 152.525 bits (384), Expect = 7.084e-40
Identity = 93/254 (36.61%), Postives = 136/254 (53.54%), Query Frame = 0
Query:   18 AVAEDGADKEQVREKQKETATEGCSDTMSTTMLPQSVA------SVLQKITKWKDYANYGNPVGESRVIPMKTPLT---LELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNP--EHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARY 260
            AVAED  ++  +     E A EG     + T +P++ A      SVL+K+ KW DY + G+ V  +++IPMKTPL+   +E + AH                                  T+   ++EQ  LGR IGL+VDL+NH+CLYEED+      VS  H   VAK +P    CR   + +  +L+ +   + YVA+HC+YG+NRTG++   +LVE L  +  +AL  FA+ARPPG+KH+HF  E + RY
Sbjct:   41 AVAED--ERPVMPRVSDERAREGVE---AGTSMPETGAVDAEAPSVLKKLQKWGDYESCGDVVRGTKLIPMKTPLSARYVEDRCAH--------------------------------ALTMDILLREQRALGREIGLIVDLTNHDCLYEEDVP---ASVSRTHVRNVAKTVPSVGDCRRASKVVNDFLSSDAGKDRYVAVHCAYGFNRTGFMICCHLVETLGVSPEEALELFAEARPPGLKHQHFRCELIERY 254          
BLAST of EWM23705.1 vs. NCBI_GenBank
Match: gi|1199294600|gb|OUS49681.1| (mRNA capping enzyme, guanylyltransferase subunit [Ostreococcus tauri])

HSP 1 Score: 152.525 bits (384), Expect = 7.985e-40
Identity = 89/249 (35.74%), Postives = 131/249 (52.61%), Query Frame = 0
Query:   18 AVAEDGAD-KEQVREKQKETATEGCSDTMSTTMLPQSVASVLQKITKWKDYANYGNPVGESRVIPMKTPLT---LELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNP--EHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARY 260
            AVAED      +V +++     E  +    T  +     SVL+K+ KW DY + G+ V  +++IPMKTPL+   +E + AH                                  T+   ++EQ  LGR IGL+VDL+NH+CLYEED+      VS  H   VAK +P    CR   + +  +L+ +   + YVA+HC+YG+NRTG++   +LVE L  +  +AL  FA+ARPPG+KH+HF  E + RY
Sbjct:   41 AVAEDERPVMPRVSDERAREGVEAGTSMPETGTVDAEAPSVLKKLQKWGDYESCGDVVRGTKLIPMKTPLSARYVEDRCAH--------------------------------ALTMDILLREQRALGREIGLIVDLTNHDCLYEEDVP---ASVSRTHVRNVAKTVPSVGDCRRASKVVNDFLSSDAGKDRYVAVHCAYGFNRTGFMICCHLVETLGVSPEEALELFAEARPPGLKHQHFRCELIERY 254          
BLAST of EWM23705.1 vs. NCBI_GenBank
Match: gi|302845489|ref|XP_002954283.1| (hypothetical protein VOLCADRAFT_118653 [Volvox carteri f. nagariensis] >gi|300260488|gb|EFJ44707.1| hypothetical protein VOLCADRAFT_118653, partial [Volvox carteri f. nagariensis])

HSP 1 Score: 155.606 bits (392), Expect = 5.582e-38
Identity = 79/211 (37.44%), Postives = 117/211 (55.45%), Query Frame = 0
Query:   50 LPQSVASVLQKITKWKDYANYGNPVGESRVIPMKTPLTLELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNPEHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARY 260
            +P SV +VL K+ KW DY + G  V  ++ IPMKTPL+                      E+  S  + S+P+      T+ + V +QA LGR +GL++DLSNH+CLY +D+    P ++Y H   VAK +P       V      +   +P+ Y+A+HC+YG+NRTG++   YL+E        AL+AFA++RPPG+KHE F +E   RY
Sbjct:   67 IPASVPTVLTKLQKWGDYESVGRQVLPTKFIPMKTPLS---------------------AEILNSWSLPSQPKHRL---TVPEMVAQQAALGRKVGLLLDLSNHDCLYTDDIP---PWLTYRHIQLVAKELPPPEFVDTVVAVANKFWEKHPDEYIAVHCAYGFNRTGFVVCCYLIECCGLNVEAALSAFAESRPPGVKHEQFRNELHRRY 250          
BLAST of EWM23705.1 vs. NCBI_GenBank
Match: gi|552816014|ref|XP_005844578.1| (hypothetical protein CHLNCDRAFT_58853 [Chlorella variabilis] >gi|307104221|gb|EFN52476.1| hypothetical protein CHLNCDRAFT_58853 [Chlorella variabilis])

HSP 1 Score: 150.984 bits (380), Expect = 1.387e-36
Identity = 74/205 (36.10%), Postives = 109/205 (53.17%), Query Frame = 0
Query:   56 SVLQKITKWKDYANYGNPVGESRVIPMKTPLTLELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNPEHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARY 260
            SVL K+ KW +Y   G PV  +  IPMKTP++ E+                         +  S  EA     T+   + +Q   GR +GLV+DL+NH+CLY +D+      + YEH   +AK +P R    +V R    +   +PE ++AIHC+YG+NRTG++  +YL +    +   AL +FA ARPPG+KH+ F+ E  ARY
Sbjct:   52 SVLNKLQKWANYEATGRPVWPTHFIPMKTPMSREIL------------------------DNWSLAEAPKHALTVPLLLAQQEAAGRDVGLVIDLANHDCLYSDDMLDS---LEYEHVQLIAKVLPSREAINEVERIAKSFWREHPEKFIAIHCAYGFNRTGFVVCSYLCQACGLSVDQALESFAAARPPGVKHDKFIRELYARY 229          
BLAST of EWM23705.1 vs. NCBI_GenBank
Match: gi|633913047|gb|KDD76743.1| (hypothetical protein H632_c121p1 [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 143.665 bits (361), Expect = 4.241e-35
Identity = 73/205 (35.61%), Postives = 109/205 (53.17%), Query Frame = 0
Query:   56 SVLQKITKWKDYANYGNPVGESRVIPMKTPLTLELQGAHFPPATSSSPSHTPNTEVTGSGEISSKPEADFQVHTIQKFVQEQAILGRTIGLVVDLSNHECLYEEDLKRDCPHVSYEHFLFVAKNIPDRNGCRDVGRCITGYLAGNPEHYVAIHCSYGWNRTGYICAAYLVEELRYTASDALAAFAQARPPGIKHEHFLSEFLARY 260
            +VL K+ KW  Y + G PV  +R +PMKTP++ E+                            S PE      +++  + E    GR +GL++DL+NH+CLY +DL  D   V++      AK +P ++    V R      A  PE +VAIHC+YG+NRTG++  +YL +E   +  +AL +FA ARPPG+KHE F++E   RY
Sbjct:   38 TVLSKLQKWGSYPSLGLPVYPTRFLPMKTPMSEEILSNW------------------------SLPEPPQHTLSVRSLLAETRQAGRPLGLIIDLANHDCLYADDLPAD---VAHSQVALEAKVLPTQSAVDQVARLAQACWAERPEGHVAIHCAYGFNRTGFVVCSYLCQEEGLSVDEALQSFAAARPPGVKHEKFVAELYRRY 215          
The following BLAST results are available for this feature:
BLAST of EWM23705.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104859|gb|EWM23705.1|0.000e+0100.00Protein-tyrosine phosphatase [Nannochloropsis gadi... [more]
gi|545368680|ref|XP_005649118.1|2.613e-4438.20hypothetical protein COCSUDRAFT_62003 [Coccomyxa s... [more]
gi|255080378|ref|XP_002503769.1|7.780e-4436.57predicted protein [Micromonas commoda] >gi|2265190... [more]
gi|612392059|ref|XP_007511550.1|1.568e-4239.01predicted protein [Bathycoccus prasinos] >gi|41298... [more]
gi|308803466|ref|XP_003079046.1|6.175e-4036.61mRNA capping enzyme, guanylyltransferase (alpha) s... [more]
gi|693500512|emb|CEF97757.1|7.084e-4036.61Protein-tyrosine phosphatase, active site [Ostreoc... [more]
gi|1199294600|gb|OUS49681.1|7.985e-4035.74mRNA capping enzyme, guanylyltransferase subunit [... [more]
gi|302845489|ref|XP_002954283.1|5.582e-3837.44hypothetical protein VOLCADRAFT_118653 [Volvox car... [more]
gi|552816014|ref|XP_005844578.1|1.387e-3636.10hypothetical protein CHLNCDRAFT_58853 [Chlorella v... [more]
gi|633913047|gb|KDD76743.1|4.241e-3535.61hypothetical protein H632_c121p1 [Helicosporidium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6998rna6998Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications