rna6997, rna6997 (mRNA) Nannochloropsis gaditana

Overview
Namerna6997
Unique Namerna6997
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1566
Alignment locationCM002470.1:207130..208047 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100030g19.4198.mrna
Orig protein idgnl|cribi|Naga_100030g19.4198
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002470.1supercontigCM002470.1:207130..208047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100030g19gene6763Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23701.1cds6981Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6997rna6997-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6997 ID=rna6997|Name=rna6997|organism=Nannochloropsis gaditana|type=mRNA|length=1566bp
GTAACACGTTCCTATCACACCATTTATGACTTCAATTTCTTGCTACAGCG
TGAAGAAGGGGGACATACTCTTTGATAGCACGCTCGCATGAAGCTCGTGA
GTCGAGATGTAAGCGGGAAGGATGGAGCGGGAACCGTCGTGCTGCGGCCT
GAGGAGCCCGAGGACATGTGGGCCATCTACAACCTCATAAGTGAAGGAGA
CCTCGTTCGCACCACCACCTTCCGCAAAGTAGTCAAAGAAAGCGCCACAG
GATCAACGACAAGCAATAAAATTCGCCTGAACCTGACCATTCAGGTGCAG
CGGATGCAATTCGACCCAGACACCTGCGTTTTGCGTCTGAGTGGCCCTAA
TCGGGAAGAGTCCGAGCACGTGAAGATGGGAGCCTATCACACCTTGGATC
TAGAGCTACAACGGAATTTTACCATTCAAAAGACGTGCTGGGACACAGTG
GTTCTGGACCGCCTGGACGATGCCTGCGACCCGGTCAAGCAAGCTGAGGT
TGCGGCCATCGTCATGCAGTCAGGCTTGGCGAATATCTGCCTCCTGACAG
GATCCATGACTCTCGTCAGGCAGCGAATAGATATGCCAATTCCGAAAAAG
CGGGCAGGGAATGTTGCTCACGATAAGGCCATCCAAAAATTTTACCGCGC
CGTCTACGAGGCAGTAACGCGACACATCAATTTTAGTCTGGTCAAAGCCG
TCCTGCTCGCCAGTCCCGGCTTCGTGAACTCGGACTTCTTCGCCTTTCTC
AACAGCGAGGCGCAGCTCAAGGAGGATAAGTCCTTGCTGCAGAATAAATC
CAAGTTTGTGCTCTGCCACTCCTCCTCGGGCCACAAGCACGCGCTGGAGG
AGGTATTGACCCAACCCGGGATCCAGGCGCGTCTCGCGGACACGAAAGCC
GTGGGCGAGGTGCAGGCGCTGGGGGACTTCTTCGCCATGCTCTCCGCGCA
GCCAGACCGCGCGCACTACGGTTTCAACCACGTGCAGGTGGCGGCCGAAC
ACGATGCCGTGGAGACGCTGCTGATGAGCGATTCAATCTTCCGGGGTCGC
GACTTTTTGGCGCGACGTCGGTACGTGGACCTGGTGGAGGGCGTCAAGGC
CAAGGGTGGTCGCTTTCTTTGCTTCTCCAGCCTGCACGTGACCGGCGAAA
AGCTGCACCAGCTCGGGGGCGTGGCGGCAATTCTCCGCTTTCCGCTAGAG
ATTGAGATGGAGGAGGAGGACCTGCCCCTGGAGGAGGCGGGCGGGGCCGG
GCTGGGGGCAGGCGGTGTAGGAGGCAACGGTGCCGCTACCAAAGTTGACC
ATGGTGCTGCGGCGGGACAAGAGAACTTGACGGGGTCAGAGGGCGGAGGA
AAACCTGAGGAGGGGACCGAGGCCGAAGAGACGGCATGGGCGGGAGGGGA
TGTAGGGGTGAGCGACGCCGAAGGCATGGGGTTGTGACAGTAGCCGGGCC
AAGGAAGAAAATTGAGCCCAGTCAAATTCCATTTATTGTGAGTAGCCAAG
AATAGATTTCCCTTCCCATAGGAAGTAACTGCACAAAGCAAGTAAGCAAC
GAGTTCATCTCTCTTC
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protein sequence of rna6997

>rna6997-protein ID=rna6997-protein|Name=rna6997|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MARRILLPSTVALLFGLAFLHLKNVCAFLPSGRSRYLPFRCTTHILRKNC
VRSGNFAPIYASADESESGPATEKRELDRLFEEVEKANQSNGLKEAIKST
VSRLPLPSAGSKAVRTEPDRPFRFPAYGFLVMSMLLGISFTGSLTELAGG
KPLLGQTATIAVIATAGPGFVASFVVAVKRYNEEKEEDNARLEEEERQDE
LARQRALQGPVPLEALKEKE
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mRNA from alignment at CM002470.1:207130..208047-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6997 ID=rna6997|Name=rna6997|organism=Nannochloropsis gaditana|type=mRNA|length=918bp|location=Sequence derived from alignment at CM002470.1:207130..208047- (Nannochloropsis gaditana)
TCCATGCTCCACCTTGACCGCGTCACGGTCGGCAATCCTCCGTGGCAACA
GCTTGTGATTGATTTCTCCCTCTACATTTTCAGATTGCCTGGTAAATTTT
GCCTGGGTACAAGATCTCCATGGCGCGTAGGATACTCCTTCCATCTACAG
TTGCCCTCCTATTCGGCCTCGCCTTTTTGCACCTGAAGAACGTTTGCGCT
TTTCTTCCTAGCGGCCGCAGTCGGTATTTACCTTTTAGATGCACAACACA
TATACTTCGTAAGAATTGCGTAAGGAGTGGCAATTTTGCGCCCATCTACG
CGTCGGCCGATGAAAGTGAAAGCGGTCCAGCAACGGAGAAGCGAGAATTA
GACCGTCTCTTCGAGGAGGTGGAAAAAGCAAATCAAAGCAACGGCCTAAA
AGAAGCCATCAAATCAACTGTAAGCAGGTTACCATTGCCAAGTGCAGGTT
CCAAAGCCGTCCGCACGGAGCCCGACAGGCCATTTCGCTTTCCTGCTTAC
GGCTTCCTGGTCATGTCCATGCTGCTAGGCATCAGCTTTACGGGCTCCTT
GACAGAGCTGGCTGGGGGTAAGCCACTTCTGGGACAGACTGCCACGATAG
CCGTCATAGCAACAGCAGGTCCTGGCTTCGTAGCTTCCTTTGTGGTGGCG
GTGAAACGCTACAATGAGGAGAAGGAGGAGGACAATGCGCGCCTGGAGGA
GGAGGAGAGACAAGACGAACTCGCCCGCCAACGGGCGCTGCAAGGTCCTG
TGCCTCTTGAGGCTTTGAAAGAGAAGGAGTAGGTGCAGTATTAGGCCGGC
TCAAAGTATTGTTTCAATTGAGGAGGGCTTGCTTGTGAACTAATCAGTAA
GCGTTCAAAAAGAAGAGAGATGAACTCGTTGCTTACTTGCTTTGTGCAGT
TACTTCCTATGGGAAGGG
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Coding sequence (CDS) from alignment at CM002470.1:207130..208047-

>rna6997 ID=rna6997|Name=rna6997|organism=Nannochloropsis gaditana|type=CDS|length=663bp|location=Sequence derived from alignment at CM002470.1:207130..208047- (Nannochloropsis gaditana)
ATGGCGCGTAGGATACTCCTTCCATCTACAGTTGCCCTCCTATTCGGCCT
CGCCTTTTTGCACCTGAAGAACGTTTGCGCTTTTCTTCCTAGCGGCCGCA
GTCGGTATTTACCTTTTAGATGCACAACACATATACTTCGTAAGAATTGC
GTAAGGAGTGGCAATTTTGCGCCCATCTACGCGTCGGCCGATGAAAGTGA
AAGCGGTCCAGCAACGGAGAAGCGAGAATTAGACCGTCTCTTCGAGGAGG
TGGAAAAAGCAAATCAAAGCAACGGCCTAAAAGAAGCCATCAAATCAACT
GTAAGCAGGTTACCATTGCCAAGTGCAGGTTCCAAAGCCGTCCGCACGGA
GCCCGACAGGCCATTTCGCTTTCCTGCTTACGGCTTCCTGGTCATGTCCA
TGCTGCTAGGCATCAGCTTTACGGGCTCCTTGACAGAGCTGGCTGGGGGT
AAGCCACTTCTGGGACAGACTGCCACGATAGCCGTCATAGCAACAGCAGG
TCCTGGCTTCGTAGCTTCCTTTGTGGTGGCGGTGAAACGCTACAATGAGG
AGAAGGAGGAGGACAATGCGCGCCTGGAGGAGGAGGAGAGACAAGACGAA
CTCGCCCGCCAACGGGCGCTGCAAGGTCCTGTGCCTCTTGAGGCTTTGAA
AGAGAAGGAGTAG
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Synonyms
Publications